Cp4.1LG06g01590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g01590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptioncalcium-binding protein CML39-like
LocationCp4.1LG06: 842205 .. 842474 (-)
RNA-Seq ExpressionCp4.1LG06g01590
SyntenyCp4.1LG06g01590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTTTTCCGTCCAAAAATGAATCCAAAGAGCGCCTACTCAGCGAAGGAACTAAAAGAGATCTTCCACCAAATGGATACGAATGAAGACGGCGGGTTGGGATTGTTCGAGATCAAGAACGCATTGAAGCAACTCGACGCTAAATTTCCAATCCATCTTGCCTACGAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGTGAAGGCTATGTTGTATGA

mRNA sequence

ATGTCGTTTTTCCGTCCAAAAATGAATCCAAAGAGCGCCTACTCAGCGAAGGAACTAAAAGAGATCTTCCACCAAATGGATACGAATGAAGACGGCGGGTTGGGATTGTTCGAGATCAAGAACGCATTGAAGCAACTCGACGCTAAATTTCCAATCCATCTTGCCTACGAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGTGAAGGCTATGTTGTATGA

Coding sequence (CDS)

ATGTCGTTTTTCCGTCCAAAAATGAATCCAAAGAGCGCCTACTCAGCGAAGGAACTAAAAGAGATCTTCCACCAAATGGATACGAATGAAGACGGCGGGTTGGGATTGTTCGAGATCAAGAACGCATTGAAGCAACTCGACGCTAAATTTCCAATCCATCTTGCCTACGAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGTGAAGGCTATGTTGTATGA

Protein sequence

MSFFRPKMNPKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
Homology
BLAST of Cp4.1LG06g01590 vs. NCBI nr
Match: KAG7024250.1 (hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176 bits (446), Expect = 1.87e-55
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 0

Query: 1  MSFFRPKMNPKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALC 60
          MSFFRPK+N KSAYS KELKEIFHQMDTNEDGGLGLFEIKNALKQLDA+FPIHLAY+ALC
Sbjct: 1  MSFFRPKLNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALC 60

Query: 61 HADRNIDGKLGEEEIDEFVKYMLSEGYVV 89
          HADRNIDGKLGEEEIDEFVKYMLSEGYVV
Sbjct: 61 HADRNIDGKLGEEEIDEFVKYMLSEGYVV 89

BLAST of Cp4.1LG06g01590 vs. NCBI nr
Match: KGN55187.1 (hypothetical protein Csa_012728 [Cucumis sativus])

HSP 1 Score: 147 bits (370), Expect = 9.36e-44
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 2  SFFRPK-------MNPKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHL 61
          S FRPK       ++ +SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDA+ P+HL
Sbjct: 3  SMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHL 62

Query: 62 AYEALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 89
          AY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Sbjct: 63 AYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

BLAST of Cp4.1LG06g01590 vs. NCBI nr
Match: KAA0064378.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa] >TYK20209.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 1.43e-41
Identity = 65/82 (79.27%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 8  MNPKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNID 67
          ++ +SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDA+ P+HLAY ALC+ADRN D
Sbjct: 8  VSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCYADRNRD 67

Query: 68 GKLGEEEIDEFVKYMLSEGYVV 89
          GKLGEEEID+FVKYM+S+GYVV
Sbjct: 68 GKLGEEEIDQFVKYMMSKGYVV 89

BLAST of Cp4.1LG06g01590 vs. NCBI nr
Match: KAG7037807.1 (hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (340), Expect = 1.08e-38
Identity = 61/79 (77.22%), Postives = 74/79 (93.67%), Query Frame = 0

Query: 11  KSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNIDGKL 70
           +S YSAKEL+EIF+QMDTNEDGGLGLFEIK ALKQLDA+FP+HLA++ALC +DRN DGKL
Sbjct: 56  ESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKL 115

Query: 71  GEEEIDEFVKYMLSEGYVV 89
           G +EID+F+KY++SEGYVV
Sbjct: 116 GRDEIDKFIKYLMSEGYVV 134

BLAST of Cp4.1LG06g01590 vs. NCBI nr
Match: KAG6608479.1 (hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (340), Expect = 1.08e-38
Identity = 61/79 (77.22%), Postives = 74/79 (93.67%), Query Frame = 0

Query: 11  KSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNIDGKL 70
           +S YSAKEL+EIF+QMDTNEDGGLGLFEIK ALKQLDA+FP+HLA++ALC +DRN DGKL
Sbjct: 56  ESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKL 115

Query: 71  GEEEIDEFVKYMLSEGYVV 89
           G +EID+F+KY++SEGYVV
Sbjct: 116 GRDEIDKFIKYLMSEGYVV 134

BLAST of Cp4.1LG06g01590 vs. ExPASy TrEMBL
Match: A0A0A0L3J7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 4.53e-44
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 2  SFFRPK-------MNPKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHL 61
          S FRPK       ++ +SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDA+ P+HL
Sbjct: 3  SMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHL 62

Query: 62 AYEALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 89
          AY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Sbjct: 63 AYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

BLAST of Cp4.1LG06g01590 vs. ExPASy TrEMBL
Match: A0A5D3D9N2 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003460 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 6.91e-42
Identity = 65/82 (79.27%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 8  MNPKSAYSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNID 67
          ++ +SAYSAKEL++IF+QMDTNEDGGLGLFEIKNALK+LDA+ P+HLAY ALC+ADRN D
Sbjct: 8  VSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCYADRNRD 67

Query: 68 GKLGEEEIDEFVKYMLSEGYVV 89
          GKLGEEEID+FVKYM+S+GYVV
Sbjct: 68 GKLGEEEIDQFVKYMMSKGYVV 89

BLAST of Cp4.1LG06g01590 vs. ExPASy TrEMBL
Match: W9S022 (Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_000100 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.90e-13
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 9   NPKSA-YSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNID 68
           +PK A Y  ++LK +  + DT+ DG L   E+K A K+L A  P   A  ALCHAD+N D
Sbjct: 19  SPKPAVYDKEKLKSVIRRYDTDGDGNLSRKELKKAFKELGATAPGWRAIRALCHADKNRD 78

Query: 69  GKLGEEEIDEFVKYMLSEGYVV 89
           G + EEE+   V Y    GYV+
Sbjct: 79  GFISEEELANLVHYAAQRGYVL 100

BLAST of Cp4.1LG06g01590 vs. ExPASy TrEMBL
Match: A0A6A1UYX3 (Putative calcium-binding protein CML10 OS=Morella rubra OX=262757 GN=CJ030_MR0G017070 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.20e-13
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 14  YSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNIDGKLGEE 73
           Y+ ++L+ +F + DTN DG L   E++NA + L +  P   A+ AL HADRN DG++ E 
Sbjct: 31  YTGEQLRGMFKRFDTNGDGQLSRQELRNAFRSLGSAAPGWRAFRALGHADRNGDGQISEA 90

Query: 74  EIDEFVKYMLSEGYVV 89
           E+D  V Y L  GY V
Sbjct: 91  ELDNLVGYALKHGYTV 106

BLAST of Cp4.1LG06g01590 vs. ExPASy TrEMBL
Match: A0A5N6RQD5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018542 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.44e-13
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 14  YSAKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAKFPIHLAYEALCHADRNIDGKLGEE 73
           Y+  +L  +F + D N DG L   E++NA   L +  P   A+ ALCHAD+N DG + E 
Sbjct: 28  YTEAQLMGMFRRFDANGDGHLSRQELRNAFSTLGSSAPGWRAFRALCHADKNGDGYISEA 87

Query: 74  EIDEFVKYMLSEGYVV 89
           E+D  V+Y L  GY +
Sbjct: 88  ELDNLVRYALKHGYTI 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7024250.11.87e-5594.38hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN55187.19.36e-4474.74hypothetical protein Csa_012728 [Cucumis sativus][more]
KAA0064378.11.43e-4179.27putative calcium-binding protein CML10 [Cucumis melo var. makuwa] >TYK20209.1 pu... [more]
KAG7037807.11.08e-3877.22hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608479.11.08e-3877.22hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0L3J74.53e-4474.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1[more]
A0A5D3D9N26.91e-4279.27Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
W9S0221.90e-1343.90Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_0001... [more]
A0A6A1UYX33.20e-1343.42Putative calcium-binding protein CML10 OS=Morella rubra OX=262757 GN=CJ030_MR0G0... [more]
A0A5N6RQD58.44e-1340.79Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018542 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 18..46
e-value: 0.11
score: 21.6
coord: 54..82
e-value: 45.0
score: 4.5
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 14..49
score: 11.779655
NoneNo IPR availableGENE3D1.10.238.10coord: 1..87
e-value: 1.7E-11
score: 46.1
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 4..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01590.1Cp4.1LG06g01590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding