Cp4.1LG06g01540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g01540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	polyadenylate-binding protein RBP47C-like
Location	Cp4.1LG06: 796137 .. 799773 (-)
RNA-Seq Expression	Cp4.1LG06g01540
Synteny	Cp4.1LG06g01540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGGTTACAGGATAATTGGCGGCGGATGGAGGCAAAGGCCGGGGAGAGGAAACTGAAATGAACAGCTGAGATTAAGTGTGTTCCTTAATCGTAGGGTGTATATAGACAGCCCAAAAACCTTCCGGTTTGTATTTTCGTCATCCTCATCCTCAGGCTTAGACCCTAATCCAGTCCTCCTCTTTCGGCTTCTTTGGGTTTCCTTTTTTTGCTCTCAGATTCGGATTCTTTTTCCTCTCATTCCATTCAGATTCTTTTACCCTTTTCAGTAAGGGTGTACATTAAAATCTGCTCCATTCTCCTTGTTAATACGGAGGAAGATAAGATGCAAAGCAACGGTTCTGATTCGCAGCCGCAAGAACCAAATCAGCGCCACCAGCAGCCGCAGTCGTGGATGTCAATGCAGTACCCGCCGCCGGCTATGGTAATGCCGCACCATATGATGACGCCTCCGCATTACATGGCGCCGCCGCTTCCTCCGCCGCCGTATATGCATTATCACCCCCAATATCAGCATCACCATCTCCCTATTCAGCATTCGCAGCCGCTACAGGGATCTGGTGGCGAAAACAAAACGATTTGGGTGGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCCATACCTGCTTTGCTTCCATTGGCGAGGTTCAATTTTCTCTCTTCTTTTTCACTCATCTTTACGTTTATTATCGATGATGATTATTTGCTGATTTTCTGGAATCGTTAAAGTTCTCATATAAATCAATCTTTTCTTATTTTTTTTATGAAATGATTCATTCTCTTCCTGAACATAAGGCTAGAAATATTGAATAATTCCCTTTTCCGATTCATCCATACAGTTGTAAACGTCTACTAGTTTCTAGTTCTGATGATTTTTCTTTTTGGAGGTTTGCGTACTTCATTGTCGTTGTGCAATTTGAACACAGAAGTGCAGAACCAAATGACAATTATAAGTTTGATCAAACATTTGTTTTTTGGGAAAAAAAGGTTTTTGCTACTTTTGAGAAAGTGAGAATTTATTGGAGTTTTTTGTTGCGATTGGTTTACATTTTCTGATATTAGTAGGTTAGAGTATAGAATCTGCGTAAAAATGCAGCCGTATGTTTTGCAAAAATGTTGTTTTGGCATTTGACAAATTTTAATGAGAGCGAATTGGCAACTGGTAAATGGTAAAGCAGCATAGAAGCATGTTATAGGACTTTTTAGTCCTGTCTAGAATGGCTTTATCTTCTAGCCTCTTAAATTTACCACCTGTTGAATATTGTGAAAAGGGTATGAAGAAGTAATGGAAGATCACATTCTCTAGCAATTGACATTGACATTTTGTTTCTGAAGGAGGTTTCTTTTACTGCTTTTTATATTTATTGCTCTGTATTCAGCTATGTACATGGATTTTCTAGCTACTCTATCTCGTTCTTTTCCCTACTTTTTCGAACCAAATAATAAAAACATTATCCTAACTGTTTCCAAACAATCTTTTTTGTTGAAGAATCTTGAATTGTTCTTAGTTTGGCATGATCATGTTGAACATTGATTGTTTTATTTCCTGTATAACGCAGATTTCATCGATCAAGATCATTCGTAATAAGCAAAGTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTGCTCATGCAACAGCTGAAAAAGCTCTTCAGAACTATGCTGGAGTGCTCATGCCAAGTACAGAGCAGCCTTTCCGCTTGAATTGGGCAACATTTAGCACCGGTGACAAGCGATCAGATAATGATCCTGATCTCTCTATTTTTGTTGGCGACTTAGCTGCGGATGTTACTGATGCTCTGTTGTACGATACATTTTCTAGTAAATTTCCTTCTGTTAAAGCAGCAAAAGTTGTCATTGATGCCAATACTGGTCGTTCCAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGTCTGAAATGAATGGTGTATATTGTTCGAGCAGACCTATGCGCATTGGTGCAGCAACGCCTAGAAAGTCTTCTGGATATCAGCAACAGAATTCTTCACAAGGTATATTTAAATTGTATGGTTACAATGTAGTGTGCATAGCCTAAAACCACTTCCAAGAGGGATTAGGGTTAGTCTTTGGGGAGGACATGCAATTCTGGAATAAGTAAAGATATGGAAGCTTTCTACTTTTTCCGGGGCGTTTGGTTCAAGACTGGGGGTTATGAATAAAAAAGGATTGTGAAAATGAAAACTATAATGCTAACAAAGAAATATGTGTTGTGTCTTCCTGTCTATCAATCAAAAAGGGTTTGATTTAATTCTTTGAATGCATGTGTTCTGAGGGTTTACTCATGGTTGTACACTTCCCTACCCCTTTTTGACTGCTTATGCATATGTTGTCCTCTGTTTATTATAGGAGGATATTCAACAAATGGTCCCTTAAGCCAAGGACTCCAATCTGAAGGAGATTCTGCAAATACAACTGTAAGTTGCTTTGGTTACTTTTATCTGCACAGCTAGAAATTCCACCTCGTATTCTTGGGTTTAACCTGAGCTTTCCTTTTAGATATTTGTTGGAGGGCTTGATCCTAATGTCACCGATGAAGATCTGAGGCAACCTTTCTCACAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTTGTTCAATTTGCCAATAGGTAAAAAGTTCGTGATCTGGTTTTCCTATCATATAAACCATGAATTAATAGTGTATCTATCTGGTTATTGGTTTTGTCAACTTGTTGATTTTTACTAATTTCTGCCACATATTCTTCTCAATTTTCCTTTGCAGAAATGATGCTGAAGAGGCCTTGCAGAAACTAAATGCAACTGTAATTGGCAAGCAAACTATTCGTCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGGCAAATTATCTTCTCTCCTAGTGTGAAAATAATAACAAAAAACTTATGCATTACTCTCTCAATTTCCATGCTTTTCCTGAATGAATAGGAAAACAAAAAAAAATGAGCTGTTTTAAGAACTTCAATTAAGTATGAACCTTTTATTTGAACCTTGTCTCAGTTATGGAATTGAATTTGGAAACACGTAGCCGGGGAAATGTTTGGTTTACATTCCTTCTTAATTCTTACCATCTGTAGCGGCCGATTTAGGTTGATAAATAGTCTTAACAGCATTTTTTCTTGCATTTGTTGAGGTGTGGCAGTTCAGAGATTTTGGTAACCAGTGGAATGGAGCTTACTACGGGGGGCACATATATGATGGCTATGGATATGGTCTGCCGCCTCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTACACTGTATACGGAAGCCATCAACAACAAGTAATCTGAACACAGAAAAGCTCATATTAATCCTTGGGCGCTTTTCAAGTAGAACAGCTGAAGTTGCTTCAGCTTCTGGAATTCACTTGGTTTTAGATTTTTTCTTTTTTCCATATTAATCATCCTTCCATCAGCCTAGAGGAACTGAATTTTGATGACCTGAGCTAGTTCTCTCATCTTGTAGGGAATACTATATATTTATTTCATTCAGATTGATAACAAACTTATTTATTAGAATATATATATATAATGTTGCAATAGTGCATGCATGTTACATA

mRNA sequence

TGATGGTTACAGGATAATTGGCGGCGGATGGAGGCAAAGGCCGGGGAGAGGAAACTGAAATGAACAGCTGAGATTAAGTGTGTTCCTTAATCGTAGGGTGTATATAGACAGCCCAAAAACCTTCCGGTTTGTATTTTCGTCATCCTCATCCTCAGGCTTAGACCCTAATCCAGTCCTCCTCTTTCGGCTTCTTTGGGTTTCCTTTTTTTGCTCTCAGATTCGGATTCTTTTTCCTCTCATTCCATTCAGATTCTTTTACCCTTTTCAGTAAGGGTGTACATTAAAATCTGCTCCATTCTCCTTGTTAATACGGAGGAAGATAAGATGCAAAGCAACGGTTCTGATTCGCAGCCGCAAGAACCAAATCAGCGCCACCAGCAGCCGCAGTCGTGGATGTCAATGCAGTACCCGCCGCCGGCTATGGTAATGCCGCACCATATGATGACGCCTCCGCATTACATGGCGCCGCCGCTTCCTCCGCCGCCGTATATGCATTATCACCCCCAATATCAGCATCACCATCTCCCTATTCAGCATTCGCAGCCGCTACAGGGATCTGGTGGCGAAAACAAAACGATTTGGGTGGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCCATACCTGCTTTGCTTCCATTGGCGAGATTTCATCGATCAAGATCATTCGTAATAAGCAAAGTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTGCTCATGCAACAGCTGAAAAAGCTCTTCAGAACTATGCTGGAGTGCTCATGCCAAGTACAGAGCAGCCTTTCCGCTTGAATTGGGCAACATTTAGCACCGGTGACAAGCGATCAGATAATGATCCTGATCTCTCTATTTTTGTTGGCGACTTAGCTGCGGATGTTACTGATGCTCTGTTGTACGATACATTTTCTAGTAAATTTCCTTCTGTTAAAGCAGCAAAAGTTGTCATTGATGCCAATACTGGTCGTTCCAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGTCTGAAATGAATGGTGTATATTGTTCGAGCAGACCTATGCGCATTGGTGCAGCAACGCCTAGAAAGTCTTCTGGATATCAGCAACAGAATTCTTCACAAGGTATATTTAAATTAAATGATGCTGAAGAGGCCTTGCAGAAACTAAATGCAACTTTCAGAGATTTTGGTAACCAGTGGAATGGAGCTTACTACGGGGGGCACATATATGATGGCTATGGATATGGTCTGCCGCCTCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTACACTGTATACGGAAGCCATCAACAACAAGTAATCTGAACACAGAAAAGCTCATATTAATCCTTGGGCGCTTTTCAAGTAGAACAGCTGAAGTTGCTTCAGCTTCTGGAATTCACTTGGTTTTAGATTTTTTCTTTTTTCCATATTAATCATCCTTCCATCAGCCTAGAGGAACTGAATTTTGATGACCTGAGCTAGTTCTCTCATCTTGTAGGGAATACTATATATTTATTTCATTCAGATTGATAACAAACTTATTTATTAGAATATATATATATAATGTTGCAATAGTGCATGCATGTTACATA

Coding sequence (CDS)

ATGCAAAGCAACGGTTCTGATTCGCAGCCGCAAGAACCAAATCAGCGCCACCAGCAGCCGCAGTCGTGGATGTCAATGCAGTACCCGCCGCCGGCTATGGTAATGCCGCACCATATGATGACGCCTCCGCATTACATGGCGCCGCCGCTTCCTCCGCCGCCGTATATGCATTATCACCCCCAATATCAGCATCACCATCTCCCTATTCAGCATTCGCAGCCGCTACAGGGATCTGGTGGCGAAAACAAAACGATTTGGGTGGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCCATACCTGCTTTGCTTCCATTGGCGAGATTTCATCGATCAAGATCATTCGTAATAAGCAAAGTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTGCTCATGCAACAGCTGAAAAAGCTCTTCAGAACTATGCTGGAGTGCTCATGCCAAGTACAGAGCAGCCTTTCCGCTTGAATTGGGCAACATTTAGCACCGGTGACAAGCGATCAGATAATGATCCTGATCTCTCTATTTTTGTTGGCGACTTAGCTGCGGATGTTACTGATGCTCTGTTGTACGATACATTTTCTAGTAAATTTCCTTCTGTTAAAGCAGCAAAAGTTGTCATTGATGCCAATACTGGTCGTTCCAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGTCTGAAATGAATGGTGTATATTGTTCGAGCAGACCTATGCGCATTGGTGCAGCAACGCCTAGAAAGTCTTCTGGATATCAGCAACAGAATTCTTCACAAGGTATATTTAAATTAAATGATGCTGAAGAGGCCTTGCAGAAACTAAATGCAACTTTCAGAGATTTTGGTAACCAGTGGAATGGAGCTTACTACGGGGGGCACATATATGATGGCTATGGATATGGTCTGCCGCCTCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTACACTGTATACGGAAGCCATCAACAACAAGTAATCTGA

Protein sequence

MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHPQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLNDAEEALQKLNATFRDFGNQWNGAYYGGHIYDGYGYGLPPHDPSMYHAAYGAYTVYGSHQQQVI

Homology

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy Swiss-Prot
Match: Q9SX79 (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 2.5e-88
Identity = 197/406 (48.52%), Postives = 245/406 (60.34%), Query Frame = 0


Query: 9   QPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHPQYQHHHLP 68
           +  +P      P  WM     PP +++PH MM    Y  PP PP    H +P + H H  
Sbjct: 37  EENQPKTSPTPPPHWMRY---PPTVIIPHQMM----YAPPPFPP---YHQYPNHHHLHHQ 96

Query: 69  IQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFAS--IGEISSIKIIRNKQSGLSEGY 128
            + ++      GENKTIWVGDLHHWMDE+YL++ FAS    EI S+K+IRNK +GLSEGY
Sbjct: 97  SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGY 156

Query: 129 GFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDND-PDLSIFVGDLAA 188
           GFVEF +H  A+K L+ + G  MP+T+QPFRLNWA+FSTG+KR +N+ PDLSIFVGDL+ 
Sbjct: 157 GFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSP 216

Query: 189 DVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSS 248
           DV+D LL++TFS K+PSVKAAKVV+DANTGRSKGYGFVRFGD+NER++AM+EMNGV CSS
Sbjct: 217 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSS 276

Query: 249 RPMRIGAATPRKSSGYQQQ-----------------NSSQGIFKLN-------------- 308
           R MRIG ATPRK++GYQQQ                 N++  +  L+              
Sbjct: 277 RAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNE 336

Query: 309 ------------------------DAEEALQKLNATF-------------------RD-F 337
                                   +AEEAL+KLN T                    RD +
Sbjct: 337 FGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKY 396

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy Swiss-Prot
Match: Q9SX80 (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 3.0e-86
Identity = 200/414 (48.31%), Postives = 246/414 (59.42%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           ++ N   + P  P      P  W  M+YPP  ++MP  M  PP    PP+P  PY H +P
Sbjct: 36  VEENQPKTSPTPP------PPHW--MRYPP--VLMPQMMYAPP----PPMPFSPY-HQYP 95

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASI--GEISSIKIIRNK 120
            + H H   + ++      GENKTIWVGDL +WMDE+YL++ F S    EI S+K+IRNK
Sbjct: 96  NHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNK 155

Query: 121 QSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDND-PDLS 180
            +G SEGYGFVEF +H  A+K LQ + G  MP+T+QPFRLNWA+FSTG+KR +N+ PDLS
Sbjct: 156 HNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLS 215

Query: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240
           IFVGDLA DV+DALL++TFS K+PSVKAAKVV+DANTGRSKGYGFVRFGD+NER++AM+E
Sbjct: 216 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 275

Query: 241 MNGVYCSSRPMRIGAATPRKSSGYQQQNS--SQGIFKLND-------------------- 300
           MNGV CSSR MRIG ATPRK++GYQQQ      G F  ++                    
Sbjct: 276 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 335

Query: 301 ---------------------------------AEEALQKLNATF--------------- 337
                                            AEEAL+KLN T                
Sbjct: 336 DLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 395

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy Swiss-Prot
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 6.3e-84
Identity = 198/436 (45.41%), Postives = 239/436 (54.82%), Query Frame = 0


Query: 4   NGSD--SQPQEPNQRHQQ-----------PQSWMSMQYPPPAMVMPHHMMTPPHYMAPPL 63
           NG D   Q Q+  Q+HQQ            Q WM+MQYP  AM M   MM    YM    
Sbjct: 2   NGGDMNQQQQQQQQQHQQQQQQWLAMQQYQQQWMAMQYPAAAMAMQQQMMYGQQYM---- 61

Query: 64  PPPPYMHYHPQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEIS 123
              PY   H Q Q      Q    +Q S  +NKTIW+GDL  WMDESYLH+CF+  GE+ 
Sbjct: 62  ---PYYQQHQQQQKMQ---QSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVI 121

Query: 124 SIKIIRNKQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRS 183
           S+KIIRNKQ+G SE YGFVEF  HA AEK LQ+Y G +MP+TEQPFRLNWA FSTG+KR+
Sbjct: 122 SVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRA 181

Query: 184 DNDPDLSIFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNE 243
           +   D SIFVGDLA+DVTD +L DTF+S++PS+K AKVV+DANTG SKGYGFVRFGD++E
Sbjct: 182 ETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESE 241

Query: 244 RSQAMSEMNGVYCSSRPMRIGAATPRKSSGYQQQNSSQ---------------------- 303
           RS+AM+EMNGVYCSSR MRIG ATP+K S ++Q +S                        
Sbjct: 242 RSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGD 301

Query: 304 -----------------------------------------GIFKLND---AEEALQKLN 337
                                                    G  + +D   A+EA+QKL+
Sbjct: 302 SSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 361

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy Swiss-Prot
Match: Q0WW84 (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=1 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.3e-81
Identity = 159/272 (58.46%), Postives = 206/272 (75.74%), Query Frame = 0


Query: 10  PQEPNQRHQQPQSWM-SMQYPPPA---MVMPHHMMTPPHYMAPPLPPPPYMHYHPQ---- 69
           PQ+  Q+ QQ Q WM +MQYPP A   M+    M+  PH    P    PY  +HPQ    
Sbjct: 27  PQQWQQQQQQQQQWMAAMQYPPAAAMMMMQQQQMLMYPHQYV-PYNQGPYQQHHPQLHQY 86

Query: 70  --YQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQ 129
             YQ H    QH    +GSG + KT+WVGDL HWMDE+YLH+CF+  GE+SS+K+IRNK 
Sbjct: 87  GSYQQHQHQ-QHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKL 146

Query: 130 SGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRS-DNDPDLSI 189
           +  SEGYGFVEF + A AE+ LQNY+G +MP+++QPFR+NWA+FSTG+KR+ +N PDLS+
Sbjct: 147 TSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSV 206

Query: 190 FVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEM 249
           FVGDL+ DVTD LL++TFS ++PSVK+AKVVID+NTGRSKGYGFVRFGD+NERS+A++EM
Sbjct: 207 FVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEM 266

Query: 250 NGVYCSSRPMRIGAATPRKSSGYQQQNSSQGI 271
           NG YCS+R MR+G ATP+++   QQQ+SSQ +
Sbjct: 267 NGAYCSNRQMRVGIATPKRAIANQQQHSSQAV 296

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy Swiss-Prot
Match: F4I3B3 (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.5e-80
Identity = 163/274 (59.49%), Postives = 202/274 (73.72%), Query Frame = 0


Query: 11  QEPNQRHQQPQSWMS--MQYPPPAMVM--PHHMMTPPHYMAPPL--------PPPPYMHY 70
           Q+  Q+ QQ Q WM+   QYP  AM M     MM  PH    P         P   Y  Y
Sbjct: 36  QQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHPQFQYAAY 95

Query: 71  HPQYQHHHLPIQHSQPLQGSGGEN-KTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRN 130
             Q Q HH   Q  QP  GSGG++ KT+WVGDL HWMDE+YLHTCF+   E+SS+K+IRN
Sbjct: 96  QQQQQQHHQSQQ--QPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRN 155

Query: 131 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKR-SDNDPDL 190
           KQ+  SEGYGFVEF + + AE+ALQ+++GV MP+ EQPFRLNWA+FSTG+KR S+N PDL
Sbjct: 156 KQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDL 215

Query: 191 SIFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMS 250
           SIFVGDLA DV+DA+L +TF+ ++PSVK AKVVID+NTGRSKGYGFVRFGD+NERS+AM+
Sbjct: 216 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 275

Query: 251 EMNGVYCSSRPMRIGAATPRKSSGYQQQNSSQGI 271
           EMNG +CSSR MR+G ATP++++ Y QQN SQ +
Sbjct: 276 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQAL 307

[Close]

BLAST of Cp4.1LG06g01540 vs. NCBI nr
Match: XP_023535397.1 (polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 641 bits (1654), Expect = 3.78e-230
Identity = 333/418 (79.67%), Postives = 334/418 (79.90%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG
Sbjct: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLN-------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQQQNSSQG +  N                          
Sbjct: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGGYSTNGPLSQGLQSEGDSANTTIFVGGLDPN 300

Query: 301 ------------------------------------DAEEALQKLNAT------------ 337
                                               DAEEALQKLNAT            
Sbjct: 301 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTIRLSWG 360

[Close]

BLAST of Cp4.1LG06g01540 vs. NCBI nr
Match: XP_022936173.1 (polyadenylate-binding protein RBP47C-like [Cucurbita moschata])

HSP 1 Score: 635 bits (1638), Expect = 1.03e-227
Identity = 330/418 (78.95%), Postives = 332/418 (79.43%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLH CFASIGEI+SIKIIRNKQS
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEIASIKIIRNKQS 120

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG
Sbjct: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLN-------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQQQNSSQG +  N                          
Sbjct: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGGYSTNGPFSQGLQSEGDSANTTIFVGGLDPN 300

Query: 301 ------------------------------------DAEEALQKLNAT------------ 337
                                               DAEEALQKLNAT            
Sbjct: 301 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTIRLSWG 360

[Close]

BLAST of Cp4.1LG06g01540 vs. NCBI nr
Match: XP_022976308.1 (polyadenylate-binding protein RBP47C-like [Cucurbita maxima])

HSP 1 Score: 635 bits (1637), Expect = 1.47e-227
Identity = 330/418 (78.95%), Postives = 331/418 (79.19%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEIS IKIIRNKQS
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISLIKIIRNKQS 120

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG
Sbjct: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIF----------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQQQN SQG +                             
Sbjct: 241 VYCSSRPMRIGAATPRKSSGYQQQNFSQGEYLTNGPLSQGLQSEGDSANTTIFVGGLDPN 300

Query: 301 ---------------------------------KLNDAEEALQKLNAT------------ 337
                                              NDAEEALQKLNAT            
Sbjct: 301 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTIRLSWG 360

[Close]

BLAST of Cp4.1LG06g01540 vs. NCBI nr
Match: KAG7024239.1 (Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 638 bits (1646), Expect = 4.02e-227
Identity = 325/397 (81.86%), Postives = 329/397 (82.87%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP
Sbjct: 115 MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 174

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWM+ESYLH CFASIGEI+SIKIIRNKQS
Sbjct: 175 QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMNESYLHNCFASIGEIASIKIIRNKQS 234

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATA+KALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 235 GLSEGYGFVEFFAHATADKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 294

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG
Sbjct: 295 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 354

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLN-------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQ QNSSQG +  N                          
Sbjct: 355 VYCSSRPMRIGAATPRKSSGYQPQNSSQGGYSTNGPFSQGLQSEGDSANTTIFVGGLDPN 414

Query: 301 ------------------------------------DAEEALQKLNATFRDFGNQWNGAY 335
                                               DAEEALQKLNATFRDFGNQWNGAY
Sbjct: 415 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATFRDFGNQWNGAY 474

[Close]

BLAST of Cp4.1LG06g01540 vs. NCBI nr
Match: XP_022140707.1 (polyadenylate-binding protein RBP47-like [Momordica charantia])

HSP 1 Score: 580 bits (1496), Expect = 4.17e-206
Identity = 307/418 (73.44%), Postives = 316/418 (75.60%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQR QQPQ WM MQYPP AMVMP HMMTP  YM PPLPP  YMHYH 
Sbjct: 1   MQSNGSDSQPQEPNQRLQQPQQWMPMQYPPAAMVMPPHMMTPQPYMPPPLPPQ-YMHYHH 60

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLH CFASIGEISSIK+IRNKQ+
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEISSIKVIRNKQT 120

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATAEKALQNY+G+ MP+TEQ FRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 121 GLSEGYGFVEFFAHATAEKALQNYSGMFMPNTEQAFRLNWATFSTGDKRSDNDPDLSIFV 180

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTD LLY+TFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAM+EMNG
Sbjct: 181 GDLAADVTDTLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNG 240

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLN-------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQQQ SSQG +  N                          
Sbjct: 241 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYSSNGSFSQGLQSEGDSANTTIFVGGLDPN 300

Query: 301 ------------------------------------DAEEALQKLNAT------------ 337
                                               DAEEALQKLN T            
Sbjct: 301 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTVIGKQTVRLSWG 360

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy TrEMBL
Match: A0A6J1FCI8 (polyadenylate-binding protein RBP47C-like OS=Cucurbita moschata OX=3662 GN=LOC111442850 PE=4 SV=1)

HSP 1 Score: 635 bits (1638), Expect = 5.01e-228
Identity = 330/418 (78.95%), Postives = 332/418 (79.43%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLH CFASIGEI+SIKIIRNKQS
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEIASIKIIRNKQS 120

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG
Sbjct: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLN-------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQQQNSSQG +  N                          
Sbjct: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGGYSTNGPFSQGLQSEGDSANTTIFVGGLDPN 300

Query: 301 ------------------------------------DAEEALQKLNAT------------ 337
                                               DAEEALQKLNAT            
Sbjct: 301 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTIRLSWG 360

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy TrEMBL
Match: A0A6J1ILR0 (polyadenylate-binding protein RBP47C-like OS=Cucurbita maxima OX=3661 GN=LOC111476746 PE=4 SV=1)

HSP 1 Score: 635 bits (1637), Expect = 7.11e-228
Identity = 330/418 (78.95%), Postives = 331/418 (79.19%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP
Sbjct: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEIS IKIIRNKQS
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISLIKIIRNKQS 120

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG
Sbjct: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIF----------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQQQN SQG +                             
Sbjct: 241 VYCSSRPMRIGAATPRKSSGYQQQNFSQGEYLTNGPLSQGLQSEGDSANTTIFVGGLDPN 300

Query: 301 ---------------------------------KLNDAEEALQKLNAT------------ 337
                                              NDAEEALQKLNAT            
Sbjct: 301 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTIRLSWG 360

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy TrEMBL
Match: A0A0A0L4T7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639100 PE=4 SV=1)

HSP 1 Score: 584 bits (1506), Expect = 9.44e-209
Identity = 298/361 (82.55%), Postives = 316/361 (87.53%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQ-PQSWMS-MQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHY 60
           MQ+NGSDSQPQEPNQRHQQ P  W+  MQYPPP MVMPHHMMTP HYMAPPLPPP YMHY
Sbjct: 1   MQNNGSDSQPQEPNQRHQQQPHPWIPPMQYPPPPMVMPHHMMTPQHYMAPPLPPP-YMHY 60

Query: 61  HPQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNK 120
           H QY HHHLPIQ SQPL+GSG ENKTIWVGDLHHWMDESYLH+CF+S+GEISS+K+IRNK
Sbjct: 61  HHQYHHHHLPIQPSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEISSMKVIRNK 120

Query: 121 QSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSI 180
           Q+GLSEGYGFVEF +H TAEK LQNY+G+ MPSTEQ FRLNWATFSTGDKRSDNDPDLSI
Sbjct: 121 QTGLSEGYGFVEFLSHTTAEKVLQNYSGMFMPSTEQTFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 FVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEM 240
           FVGDLAADVTD+LLY+TFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAM+EM
Sbjct: 181 FVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

Query: 241 NGVYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKL---NDAEEALQKLNAT--------- 300
           NG+YCSSRPMRIGAATPRKSSGYQQQ+SSQG  K    NDAEEALQKLN T         
Sbjct: 241 NGIYCSSRPMRIGAATPRKSSGYQQQHSSQGGKKFVIRNDAEEALQKLNGTVIGKQTVRL 300

Query: 301 ----------FRDFGNQWNGAYYGGHIYDGYGYGLP-PHDPSMYHAAYGAYTVYGSHQQQ 336
                     FRDFGNQWNGAYYGGHIYDGYGYGL  PHDPSMYHAAYGAYTVYG+HQQQ
Sbjct: 301 SWGRNPANKQFRDFGNQWNGAYYGGHIYDGYGYGLASPHDPSMYHAAYGAYTVYGNHQQQ 360

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy TrEMBL
Match: A0A6J1CHT5 (polyadenylate-binding protein RBP47-like OS=Momordica charantia OX=3673 GN=LOC111011304 PE=4 SV=1)

HSP 1 Score: 580 bits (1496), Expect = 2.02e-206
Identity = 307/418 (73.44%), Postives = 316/418 (75.60%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           MQSNGSDSQPQEPNQR QQPQ WM MQYPP AMVMP HMMTP  YM PPLPP  YMHYH 
Sbjct: 1   MQSNGSDSQPQEPNQRLQQPQQWMPMQYPPAAMVMPPHMMTPQPYMPPPLPPQ-YMHYHH 60

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQS 120
           QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLH CFASIGEISSIK+IRNKQ+
Sbjct: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEISSIKVIRNKQT 120

Query: 121 GLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFV 180
           GLSEGYGFVEFFAHATAEKALQNY+G+ MP+TEQ FRLNWATFSTGDKRSDNDPDLSIFV
Sbjct: 121 GLSEGYGFVEFFAHATAEKALQNYSGMFMPNTEQAFRLNWATFSTGDKRSDNDPDLSIFV 180

Query: 181 GDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNG 240
           GDLAADVTD LLY+TFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAM+EMNG
Sbjct: 181 GDLAADVTDTLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNG 240

Query: 241 VYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLN-------------------------- 300
           VYCSSRPMRIGAATPRKSSGYQQQ SSQG +  N                          
Sbjct: 241 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYSSNGSFSQGLQSEGDSANTTIFVGGLDPN 300

Query: 301 ------------------------------------DAEEALQKLNAT------------ 337
                                               DAEEALQKLN T            
Sbjct: 301 VTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTVIGKQTVRLSWG 360

[Close]

BLAST of Cp4.1LG06g01540 vs. ExPASy TrEMBL
Match: A0A1S3BUU0 (polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523 PE=4 SV=1)

HSP 1 Score: 568 bits (1463), Expect = 2.94e-201
Identity = 302/421 (71.73%), Postives = 320/421 (76.01%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQ-PQSWMS-MQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHY 60
           MQSNGSDSQPQEPNQRHQQ PQ W+  MQYPPP MVMPHHMMTP HYMAPPLPPP YMHY
Sbjct: 1   MQSNGSDSQPQEPNQRHQQQPQPWIPPMQYPPPPMVMPHHMMTPQHYMAPPLPPP-YMHY 60

Query: 61  HPQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNK 120
           H QY HHHLPIQHSQPL+GSG ENKTIWVGDLHHWMDESYLH+CF+S+GEISS+K+IRNK
Sbjct: 61  HHQYHHHHLPIQHSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEISSMKVIRNK 120

Query: 121 QSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSI 180
           Q+GLSEGYGFVEF +HATAEK LQNY+G+ MPSTEQ FRLNWATFSTGDKRSDNDPDLSI
Sbjct: 121 QTGLSEGYGFVEFLSHATAEKVLQNYSGMFMPSTEQTFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 FVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEM 240
           FVGDLAADVTD+LLY+TFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAM+EM
Sbjct: 181 FVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

Query: 241 NGVYCSSRPMRIGAATPRKSSGYQQQNSSQG-----------------------IF---- 300
           NG+YCSSRPMRIGAATPRKSSGYQQQ+SSQG                       IF    
Sbjct: 241 NGIYCSSRPMRIGAATPRKSSGYQQQHSSQGGGYSTNGYFSQGLQSEGDSANTTIFVGGL 300

Query: 301 ------------------------------------KLNDAEEALQKLNAT--------- 336
                                                 NDAEEALQKLN T         
Sbjct: 301 DPNVTDEDLRQPFSQHGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTVIGKQTVRL 360

[Close]

BLAST of Cp4.1LG06g01540 vs. TAIR 10
Match: AT1G47490.1 (RNA-binding protein 47C )

HSP 1 Score: 327.0 bits (837), Expect = 1.8e-89
Identity = 197/406 (48.52%), Postives = 245/406 (60.34%), Query Frame = 0


Query: 9   QPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHPQYQHHHLP 68
           +  +P      P  WM     PP +++PH MM    Y  PP PP    H +P + H H  
Sbjct: 37  EENQPKTSPTPPPHWMRY---PPTVIIPHQMM----YAPPPFPP---YHQYPNHHHLHHQ 96

Query: 69  IQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFAS--IGEISSIKIIRNKQSGLSEGY 128
            + ++      GENKTIWVGDLHHWMDE+YL++ FAS    EI S+K+IRNK +GLSEGY
Sbjct: 97  SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGY 156

Query: 129 GFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDND-PDLSIFVGDLAA 188
           GFVEF +H  A+K L+ + G  MP+T+QPFRLNWA+FSTG+KR +N+ PDLSIFVGDL+ 
Sbjct: 157 GFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSP 216

Query: 189 DVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSS 248
           DV+D LL++TFS K+PSVKAAKVV+DANTGRSKGYGFVRFGD+NER++AM+EMNGV CSS
Sbjct: 217 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSS 276

Query: 249 RPMRIGAATPRKSSGYQQQ-----------------NSSQGIFKLN-------------- 308
           R MRIG ATPRK++GYQQQ                 N++  +  L+              
Sbjct: 277 RAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNE 336

Query: 309 ------------------------DAEEALQKLNATF-------------------RD-F 337
                                   +AEEAL+KLN T                    RD +
Sbjct: 337 FGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKY 396

[Close]

BLAST of Cp4.1LG06g01540 vs. TAIR 10
Match: AT1G47500.1 (RNA-binding protein 47C' )

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-87
Identity = 200/414 (48.31%), Postives = 246/414 (59.42%), Query Frame = 0


Query: 1   MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHP 60
           ++ N   + P  P      P  W  M+YPP  ++MP  M  PP    PP+P  PY H +P
Sbjct: 36  VEENQPKTSPTPP------PPHW--MRYPP--VLMPQMMYAPP----PPMPFSPY-HQYP 95

Query: 61  QYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASI--GEISSIKIIRNK 120
            + H H   + ++      GENKTIWVGDL +WMDE+YL++ F S    EI S+K+IRNK
Sbjct: 96  NHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNK 155

Query: 121 QSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDND-PDLS 180
            +G SEGYGFVEF +H  A+K LQ + G  MP+T+QPFRLNWA+FSTG+KR +N+ PDLS
Sbjct: 156 HNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLS 215

Query: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240
           IFVGDLA DV+DALL++TFS K+PSVKAAKVV+DANTGRSKGYGFVRFGD+NER++AM+E
Sbjct: 216 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 275

Query: 241 MNGVYCSSRPMRIGAATPRKSSGYQQQNS--SQGIFKLND-------------------- 300
           MNGV CSSR MRIG ATPRK++GYQQQ      G F  ++                    
Sbjct: 276 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 335

Query: 301 ---------------------------------AEEALQKLNATF--------------- 337
                                            AEEAL+KLN T                
Sbjct: 336 DLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 395

[Close]

BLAST of Cp4.1LG06g01540 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 304.7 bits (779), Expect = 9.4e-83
Identity = 159/272 (58.46%), Postives = 206/272 (75.74%), Query Frame = 0


Query: 10  PQEPNQRHQQPQSWM-SMQYPPPA---MVMPHHMMTPPHYMAPPLPPPPYMHYHPQ---- 69
           PQ+  Q+ QQ Q WM +MQYPP A   M+    M+  PH    P    PY  +HPQ    
Sbjct: 27  PQQWQQQQQQQQQWMAAMQYPPAAAMMMMQQQQMLMYPHQYV-PYNQGPYQQHHPQLHQY 86

Query: 70  --YQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRNKQ 129
             YQ H    QH    +GSG + KT+WVGDL HWMDE+YLH+CF+  GE+SS+K+IRNK 
Sbjct: 87  GSYQQHQHQ-QHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKL 146

Query: 130 SGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRS-DNDPDLSI 189
           +  SEGYGFVEF + A AE+ LQNY+G +MP+++QPFR+NWA+FSTG+KR+ +N PDLS+
Sbjct: 147 TSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSV 206

Query: 190 FVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEM 249
           FVGDL+ DVTD LL++TFS ++PSVK+AKVVID+NTGRSKGYGFVRFGD+NERS+A++EM
Sbjct: 207 FVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEM 266

Query: 250 NGVYCSSRPMRIGAATPRKSSGYQQQNSSQGI 271
           NG YCS+R MR+G ATP+++   QQQ+SSQ +
Sbjct: 267 NGAYCSNRQMRVGIATPKRAIANQQQHSSQAV 296

[Close]

BLAST of Cp4.1LG06g01540 vs. TAIR 10
Match: AT1G49600.1 (RNA-binding protein 47A )

HSP 1 Score: 300.4 bits (768), Expect = 1.8e-81
Identity = 163/274 (59.49%), Postives = 202/274 (73.72%), Query Frame = 0


Query: 11  QEPNQRHQQPQSWMS--MQYPPPAMVM--PHHMMTPPHYMAPPL--------PPPPYMHY 70
           Q+  Q+ QQ Q WM+   QYP  AM M     MM  PH    P         P   Y  Y
Sbjct: 36  QQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHPQFQYAAY 95

Query: 71  HPQYQHHHLPIQHSQPLQGSGGEN-KTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRN 130
             Q Q HH   Q  QP  GSGG++ KT+WVGDL HWMDE+YLHTCF+   E+SS+K+IRN
Sbjct: 96  QQQQQQHHQSQQ--QPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRN 155

Query: 131 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKR-SDNDPDL 190
           KQ+  SEGYGFVEF + + AE+ALQ+++GV MP+ EQPFRLNWA+FSTG+KR S+N PDL
Sbjct: 156 KQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDL 215

Query: 191 SIFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMS 250
           SIFVGDLA DV+DA+L +TF+ ++PSVK AKVVID+NTGRSKGYGFVRFGD+NERS+AM+
Sbjct: 216 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 275

Query: 251 EMNGVYCSSRPMRIGAATPRKSSGYQQQNSSQGI 271
           EMNG +CSSR MR+G ATP++++ Y QQN SQ +
Sbjct: 276 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQAL 307

[Close]

BLAST of Cp4.1LG06g01540 vs. TAIR 10
Match: AT1G47490.2 (RNA-binding protein 47C )

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-80
Identity = 156/259 (60.23%), Postives = 194/259 (74.90%), Query Frame = 0


Query: 9   QPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHPQYQHHHLP 68
           +  +P      P  WM     PP +++PH MM    Y  PP PP    H +P + H H  
Sbjct: 37  EENQPKTSPTPPPHWMRY---PPTVIIPHQMM----YAPPPFPP---YHQYPNHHHLHHQ 96

Query: 69  IQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFAS--IGEISSIKIIRNKQSGLSEGY 128
            + ++      GENKTIWVGDLHHWMDE+YL++ FAS    EI S+K+IRNK +GLSEGY
Sbjct: 97  SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGY 156

Query: 129 GFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDND-PDLSIFVGDLAA 188
           GFVEF +H  A+K L+ + G  MP+T+QPFRLNWA+FSTG+KR +N+ PDLSIFVGDL+ 
Sbjct: 157 GFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSP 216

Query: 189 DVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSS 248
           DV+D LL++TFS K+PSVKAAKVV+DANTGRSKGYGFVRFGD+NER++AM+EMNGV CSS
Sbjct: 217 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSS 276

Query: 249 RPMRIGAATPRKSSGYQQQ 265
           R MRIG ATPRK++GYQQQ
Sbjct: 277 RAMRIGPATPRKTNGYQQQ 285

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g01540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX79	2.5e-88	48.52	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C P...	[more]
Q9SX80	3.0e-86	48.31	Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C'...	[more]
Q9LEB3	6.3e-84	45.41	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]
Q0WW84	1.3e-81	58.46	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P...	[more]
F4I3B3	2.5e-80	59.49	Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P...	[more]

BLAST of Cp4.1LG06g01540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535397.1	3.78e-230	79.67	polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936173.1	1.03e-227	78.95	polyadenylate-binding protein RBP47C-like [Cucurbita moschata]	[more]
XP_022976308.1	1.47e-227	78.95	polyadenylate-binding protein RBP47C-like [Cucurbita maxima]	[more]
KAG7024239.1	4.02e-227	81.86	Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022140707.1	4.17e-206	73.44	polyadenylate-binding protein RBP47-like [Momordica charantia]	[more]

BLAST of Cp4.1LG06g01540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCI8	5.01e-228	78.95	polyadenylate-binding protein RBP47C-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1ILR0	7.11e-228	78.95	polyadenylate-binding protein RBP47C-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0L4T7	9.44e-209	82.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639100 PE=4 SV=1	[more]
A0A6J1CHT5	2.02e-206	73.44	polyadenylate-binding protein RBP47-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3BUU0	2.94e-201	71.73	polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523...	[more]

BLAST of Cp4.1LG06g01540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47490.1	1.8e-89	48.52	RNA-binding protein 47C	[more]
AT1G47500.1	2.2e-87	48.31	RNA-binding protein 47C'	[more]
AT3G19130.1	9.4e-83	58.46	RNA-binding protein 47B	[more]
AT1G49600.1	1.8e-81	59.49	RNA-binding protein 47A	[more]
AT1G47490.2	1.5e-80	60.23	RNA-binding protein 47C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 273..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR47640:SF16	POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED	coord: 288..335
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 288..335
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 16..275
None	No IPR available	PANTHER	PTHR47640:SF16	POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED	coord: 16..275
None	No IPR available	CDD	cd12344	RRM1_SECp43_like	coord: 84..164 e-value: 4.05831E-44 score: 144.328
None	No IPR available	CDD	cd12345	RRM2_SECp43_like	coord: 175..254 e-value: 1.10341E-46 score: 150.892
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 177..251 e-value: 2.4E-18 score: 76.9 coord: 84..159 e-value: 1.6E-12 score: 57.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 85..147 e-value: 9.8E-13 score: 47.7 coord: 178..247 e-value: 1.3E-15 score: 57.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 83..163 score: 14.50465
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 176..255 score: 16.704798
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 164..270 e-value: 2.5E-21 score: 78.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 82..162 e-value: 6.7E-22 score: 79.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..165
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 158..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g01540.1	Cp4.1LG06g01540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding