Cp4.1LG06g01520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g01520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Precursor of CEP5
Location	Cp4.1LG06: 800646 .. 800957 (-)
RNA-Seq Expression	Cp4.1LG06g01520
Synteny	Cp4.1LG06g01520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTAATCAATTCCATCCATATCGCCTTCCTCATTTTATCTTCCATTTGCAATATATCACACACCCATGGAAGGCTGCTGCCCATGGAGCATCCCGTCGTCGGAAATCTTCGCCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGACGAGGCCACCGGCATTTCAACACAATACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTCGGCCACTCTCTTGCACCAGCAAGCCACGTGGAGTCGAAAATCCATTAG

mRNA sequence

ATGACTGTAATCAATTCCATCCATATCGCCTTCCTCATTTTATCTTCCATTTGCAATATATCACACACCCATGGAAGGCTGCTGCCCATGGAGCATCCCGTCGTCGGAAATCTTCGCCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGACGAGGCCACCGGCATTTCAACACAATACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTCGGCCACTCTCTTGCACCAGCAAGCCACGTGGAGTCGAAAATCCATTAG

Coding sequence (CDS)

ATGACTGTAATCAATTCCATCCATATCGCCTTCCTCATTTTATCTTCCATTTGCAATATATCACACACCCATGGAAGGCTGCTGCCCATGGAGCATCCCGTCGTCGGAAATCTTCGCCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGACGAGGCCACCGGCATTTCAACACAATACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTCGGCCACTCTCTTGCACCAGCAAGCCACGTGGAGTCGAAAATCCATTAG

Protein sequence

MTVINSIHIAFLILSSICNISHTHGRLLPMEHPVVGNLRRKIVETAGVAPLGTRPPAFQHNTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH

Homology

[Close]

BLAST of Cp4.1LG06g01520 vs. ExPASy Swiss-Prot
Match: Q058G9 (Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.7e-04
Identity = 32/92 (34.78%), Postives = 41/92 (44.57%), Query Frame = 0


Query: 11  FLILSSICNISHTHGRLLPMEHPVVGN---------LRRKIVETAGVAPLGTRPPAFQHN 70
           FL+L      +  HGR L ++  + G          L +          +   PP     
Sbjct: 16  FLMLVFFLGFNCVHGRTLKVDDKINGGHYDSKTMMALAKHNDMMVDDKAMQFSPPPPPPP 75

Query: 71  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLA 94
            S  G  DAE    DFRPTTPGHSPG+GHSL+
Sbjct: 76  PSQSGGKDAE----DFRPTTPGHSPGIGHSLS 103

[Close]

BLAST of Cp4.1LG06g01520 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (486), Expect = 4.07e-61
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MTVINSIHIAFLILSSICNISHTHGRLLPMEHPVVGNLRRKIVETAGVAPLGTRPPAFQH 60
           MT+INSI +AFLILSSICNISHTHGRLLP+EHP+VGNL RKIVETAGVAPLG+RPPAFQ 
Sbjct: 1   MTLINSICMAFLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETAGVAPLGSRPPAFQR 60

Query: 61  NTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 103
            TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHV+SKIH
Sbjct: 61  TTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103

[Close]

BLAST of Cp4.1LG06g01520 vs. NCBI nr
Match: KAG7024239.1 (Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (433), Expect = 2.77e-48
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 10 AFLILSSICNISHTHGRLLPMEHPVVGNLRRKIVETAGVAPLGTRPPAFQHNTSSPGDGD 69
          AFLILSSICNISHTHGRLLP+EHP+VGN  RKIVETAGVAPLG+RPPAFQ  TSSPGDGD
Sbjct: 2  AFLILSSICNISHTHGRLLPVEHPIVGNHHRKIVETAGVAPLGSRPPAFQRTTSSPGDGD 61

Query: 70 AEVLGGDFRPTTPGHSPGVGHSLAPASHV 98
          AEVLGGDFRPTTPGHSPGVGHSLAPASH+
Sbjct: 62 AEVLGGDFRPTTPGHSPGVGHSLAPASHI 90

[Close]

BLAST of Cp4.1LG06g01520 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (291), Expect = 2.63e-31
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPMEHPVVGN----LRRKIVETAGVAPLGTRPPAFQHNTSSP 69
           A LILSS  NISHT  RLLPME+P + N    L RK VET  VAPL + P AF H+TS  
Sbjct: 14  AILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 103
              D EVLGGDFRPTTPGHSPG GHS+AP SH++SKIH
Sbjct: 74  ATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Cp4.1LG06g01520 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 3.54e-29
Identity = 61/98 (62.24%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPMEHPVVGNL----RRKIVETAGVAPLGTRPPAFQHNTSSP 69
           A LILSS  NISHT  RLLP+E+P + N+     RK VET  VAPL + P AF H+TS  
Sbjct: 14  AILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 103
              D EVLGGDFRPTT GHSPG GHS+AP SH++SKIH
Sbjct: 74  ATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Cp4.1LG06g01520 vs. NCBI nr
Match: KGN55172.1 (hypothetical protein Csa_012400 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 7.36e-24
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 6   SIHIAFLILSSICNISHTHGRLLPMEH----PVVGNLRRKIVETAGVAPLGTRPPAFQHN 65
           S  +A LILSS  ++SHT  R+ P ++     +  +L  KI ET  VAPL + P AF  +
Sbjct: 10  STFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRD 69

Query: 66  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 103
           T      +AEVLGGDFRPTTPGHSPG GHS+AP SH++SKIH
Sbjct: 70  TFFT-TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Cp4.1LG06g01520 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.27e-31
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPMEHPVVGN----LRRKIVETAGVAPLGTRPPAFQHNTSSP 69
           A LILSS  NISHT  RLLPME+P + N    L RK VET  VAPL + P AF H+TS  
Sbjct: 14  AILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 103
              D EVLGGDFRPTTPGHSPG GHS+AP SH++SKIH
Sbjct: 74  ATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Cp4.1LG06g01520 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.71e-29
Identity = 61/98 (62.24%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPMEHPVVGNL----RRKIVETAGVAPLGTRPPAFQHNTSSP 69
           A LILSS  NISHT  RLLP+E+P + N+     RK VET  VAPL + P AF H+TS  
Sbjct: 14  AILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 103
              D EVLGGDFRPTT GHSPG GHS+AP SH++SKIH
Sbjct: 74  ATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Cp4.1LG06g01520 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.57e-24
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 6   SIHIAFLILSSICNISHTHGRLLPMEH----PVVGNLRRKIVETAGVAPLGTRPPAFQHN 65
           S  +A LILSS  ++SHT  R+ P ++     +  +L  KI ET  VAPL + P AF  +
Sbjct: 10  STFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRD 69

Query: 66  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 103
           T      +AEVLGGDFRPTTPGHSPG GHS+AP SH++SKIH
Sbjct: 70  TFFT-TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Cp4.1LG06g01520 vs. ExPASy TrEMBL
Match: A0A6N2L5F9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143332 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.48e-04
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 51 LGTRPPAFQ-HNTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSL 92
          L    P +Q H+T+  GDG  E     FRPTTPGHSPGVGHS+
Sbjct: 40 LNIASPDYQLHHTTKTGDGFVEA----FRPTTPGHSPGVGHSI 78

[Close]

BLAST of Cp4.1LG06g01520 vs. ExPASy TrEMBL
Match: A0A2U1PYP8 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA096640 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.54e-04
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 60 HNTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHV 98
          H+      G   +  GDFRPTTPGHSPGVGHS  P++ V
Sbjct: 56 HSDHGQESGSMVISEGDFRPTTPGHSPGVGHSTGPSATV 94

[Close]

BLAST of Cp4.1LG06g01520 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05
Identity = 32/92 (34.78%), Postives = 41/92 (44.57%), Query Frame = 0


Query: 11  FLILSSICNISHTHGRLLPMEHPVVGN---------LRRKIVETAGVAPLGTRPPAFQHN 70
           FL+L      +  HGR L ++  + G          L +          +   PP     
Sbjct: 16  FLMLVFFLGFNCVHGRTLKVDDKINGGHYDSKTMMALAKHNDMMVDDKAMQFSPPPPPPP 75

Query: 71  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLA 94
            S  G  DAE    DFRPTTPGHSPG+GHSL+
Sbjct: 76  PSQSGGKDAE----DFRPTTPGHSPGIGHSLS 103

[Close]

BLAST of Cp4.1LG06g01520 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 7.7e-04
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 63  SSPGDGDAEVLGGDFRPTTPGHSPGVGHSL 93
           +SPG G  +  G DF+PTTPGHSPGVGH++
Sbjct: 195 NSPGMGHKK--GDDFKPTTPGHSPGVGHAV 222

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g01520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q058G9	5.7e-04	34.78	Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1	[more]

BLAST of Cp4.1LG06g01520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591363.1	4.07e-61	90.29	Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7024239.1	2.77e-48	91.01	Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. arg...	[more]
TYK20222.1	2.63e-31	65.31	hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa]	[more]
KAA0064365.1	3.54e-29	62.24	hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa]	[more]
KGN55172.1	7.36e-24	52.94	hypothetical protein Csa_012400 [Cucumis sativus]	[more]

BLAST of Cp4.1LG06g01520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9H8	1.27e-31	65.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VEP2	1.71e-29	62.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L3I5	3.57e-24	52.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1	[more]
A0A6N2L5F9	1.48e-04	55.81	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143332 PE=3 SV=...	[more]
A0A2U1PYP8	1.54e-04	53.85	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA096640 PE=3 SV=1	[more]

BLAST of Cp4.1LG06g01520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66815.1	4.1e-05	34.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G50610.1	7.7e-04	63.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g01520.1	Cp4.1LG06g01520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005179	hormone activity