Cp4.1LG06g01120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g01120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionTRASH domain-containing protein
LocationCp4.1LG06: 559778 .. 561970 (-)
RNA-Seq ExpressionCp4.1LG06g01120
SyntenyCp4.1LG06g01120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTTGTTTGATTCAGTTTCCTTTTCTCTTCGTTTTTTTCTTTTATCATATTATGATTATGTATGCGTAGTCTTTGTTTCTGGTATGATTGATTGATCCGTTGTCATTACTTCGACGATGTATTTACAATTGCTAGATTTCGAATTCATGAGAATGAGAATTTCTCCTGATTCATCGCATTTTGCTAAACCTTCTCTTTTATTTCTTCTTTCAATCACTAATGGGCATAACTTTAACACTTTGAAGATTCTATTGAATCACAAGACATTTGCCTAATCAAAGATTATTGCGTTGACAGAATCTATTAAGAGATTCCAACCAAAAAGTATAAATTTAATGCAAATACCCAAACTATGATGTTTACTGGCATTTGCATTTTGTTATTGTACTATTGTGCAGCTTCACTAATGTGGTTCCGTTCTATTTCAAACCACTTTCAGCATTGGTTGATCTCTTGTATGAAGGCAGGGGCTCCCTTCTGTAATGCCATATTTTTTGTAATAAATAAAATATATTTTCCTTTCCCTTTGATTTTTTTATTATTTCTGTTTCAATCTTTCTTTCCGTATAATAAATAAAATAGAAGTAATAAAGAAAAACGAATGGCAAAAAACGGGGGAAAAAAAAAAAGCTTGACTTGCTGTTTAAAACCCTATTTCACTTCAGCTACCCCCTCCCCCCATTACCCGCCACTGCACCCCGCCTGACGCTCGGGGTTCCTGCCCGACACAGTCTCAGCGGCTACCGCCGCACGCTGCACTCTCGGCTGCTGTCAGCCTTCCCTCGAAATTGCCGTCGGTGGTTCAGCACCAATCCCTCGCCGTTGGTGCGATCGCATCGCCGCCACTCATTTGCCAGTTCCCCAAGGTTATATATTTTGTTTCGCTTGGTTATGTTGACTTATTCTCTTCACACACGGTGAAGAAAGTCGAGAACCTTTCTTTTCTTGTTGATTTCTTCTTCAACCAATGTTCACCTAGATTTCAAGTTCCTTAGATTTGAAATTAAAACAAGAATGTATACCTTAGATTTCAAATTCCTTGTTTTTTTTTTTTCATCCAAATTCTGGGGTTCCAAAGAGTGGTAAACTTGCGCTTAAAGTTATAATCCAAGTAAGCCGAGCGTTTTCGCAGGGGGTGGGAGTATGTTAAATTTCTGAACTATTTAGCTTTTTAGAGAGATTGTTTCTCCGTTTCAGTCGATCTTCTGAATATATAAGTTGCAGTTCATTTGATTTTCTCTTGCCCGTGCCTTTTGTGTGCAGGAAATTTATAGGCTTGTTATTTGATCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGGTAAGATTTAACCAACCTTTTGTGATTTGTTGTTTGTGATGCATATTAGGCTGTTGAAGTTGATAATTGTTCTTGTTAAACTAGTGATGATGGACAGGGAGCCCTATGTTTCTACTTCCTAATCTGATTTTTCTGCAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGGTTTTAAATTTCTTCCATTGCCGTTTGTTGTATGCCTATATATTTTGTGAATACTGCTTCTTGTGGTGTAACTCGGGATCGTTCGCGTTTGCAGAATGCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCATATGGAAGAATGAGTTTGTTACTCTTATATCATTATATCTAATATTTACGTCATAATTACTTTTTCACATATCTCGAACTGCTACAATTCTTATGCAGTGGTAGATTGTCATTGTTTGTTCTATAGAATTTCATTTTGAGAATTGTTCTTTAATCATTTCTTGCTTC

mRNA sequence

ATGGACCTTCTACCCCCTCCCCCCATTACCCGCCACTGCACCCCGCCTGACGCTCGGGGTTCCTGCCCGACACAGTCTCAGCGGCTACCGCCGCACGCTGCACTCTCGGCTGCTGTCAGCCTTCCCTCGAAATTGCCGTCGGTGGTTCAGCACCAATCCCTCGCCGTTGGTGCGATCGCATCGCCGCCACTCATTTGCCAGTTCCCCAAGGCTTGTTATTTGATCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGAATGCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCATATGGAAGAATGAGTTTGTTACTCTTATATCATTATATCTAATATTTACGTCATAATTACTTTTTCACATATCTCGAACTGCTACAATTCTTATGCAGTGGTAGATTGTCATTGTTTGTTCTATAGAATTTCATTTTGAGAATTGTTCTTTAATCATTTCTTGCTTC

Coding sequence (CDS)

ATGGACCTTCTACCCCCTCCCCCCATTACCCGCCACTGCACCCCGCCTGACGCTCGGGGTTCCTGCCCGACACAGTCTCAGCGGCTACCGCCGCACGCTGCACTCTCGGCTGCTGTCAGCCTTCCCTCGAAATTGCCGTCGGTGGTTCAGCACCAATCCCTCGCCGTTGGTGCGATCGCATCGCCGCCACTCATTTGCCAGTTCCCCAAGGCTTGTTATTTGATCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGAATGCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCATATGGAAGAATGA

Protein sequence

MDLLPPPPITRHCTPPDARGSCPTQSQRLPPHAALSAAVSLPSKLPSVVQHQSLAVGAIASPPLICQFPKACYLIKKRMRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKELREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE
Homology
[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.8e-57
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R++  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 246
            +  KELDQ+I +V+AP A          KIK++V   ++ QN  MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.5e-42
Identity = 79/142 (55.63%), Postives = 108/142 (76.06%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  +YPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K+MT D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      RM+G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 199 REAKKELDQSISLVKAPLALKE 221
           ++  KE++Q++SL++ P AL +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.9e-40
Identity = 79/143 (55.24%), Postives = 115/143 (80.42%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 199 REAK--KELDQSISLVKAPLALK 220
           ++ +  KE+ Q+I L++APLA K
Sbjct: 121 QKVQDVKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy Swiss-Prot
Match: Q99L28 (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.9e-40
Identity = 79/143 (55.24%), Postives = 115/143 (80.42%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 199 REAK--KELDQSISLVKAPLALK 220
           ++ +  KE+ Q+I L++APLA K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy Swiss-Prot
Match: Q9UHA3 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 9.1e-40
Identity = 79/143 (55.24%), Postives = 115/143 (80.42%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 199 REAK--KELDQSISLVKAPLALK 220
           ++ +  KE+ Q+I L++APLA K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: XP_023535971.1 (probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329 bits (844), Expect = 2.68e-112
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 245
           REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 167

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: KAG6591317.1 (putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024200.1 putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (820), Expect = 1.25e-108
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKA+EL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 245
           REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQN  MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 168

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: XP_022976358.1 (probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima])

HSP 1 Score: 318 bits (816), Expect = 5.09e-108
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 245
           REAKKELDQSISLVKAPLALKEDPSLTLPKIK++VEPSQAEQN  MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: XP_022936461.1 (probable ribosome biogenesis protein RLP24 [Cucurbita moschata] >XP_022936462.1 probable ribosome biogenesis protein RLP24 [Cucurbita moschata] >XP_022936463.1 probable ribosome biogenesis protein RLP24 [Cucurbita moschata])

HSP 1 Score: 314 bits (805), Expect = 2.41e-106
Identity = 163/168 (97.02%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRND KIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDTKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPER DRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERCDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 245
           REAKKELDQSISLVKAPLALKEDPSL LPKIKLNVEPSQAEQN  MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLILPKIKLNVEPSQAEQNQSMEE 168

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: XP_038905540.1 (probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida])

HSP 1 Score: 315 bits (807), Expect = 3.17e-106
Identity = 165/187 (88.24%), Postives = 170/187 (90.91%), Query Frame = 0 

Query: 62  PPLICQFPK--ACYLIKKRMRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFK 121
           P  +C   K   CYL+KKRMRLEKCWFCSSTIYPGHGIQFVRNDA IFRFCRSKCHKNFK
Sbjct: 10  PQHLCSSGKFRLCYLLKKRMRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFK 69

Query: 122 MKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRA 181
           MKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRA
Sbjct: 70  MKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRA 129

Query: 182 ERESRHIARRMQGKKAKELREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAE 241
            RESRHIARR QGKKAKEL EA+KELDQSISLVKAP ALKEDPSLTLPKIK+ V PSQAE
Sbjct: 130 NRESRHIARRHQGKKAKELGEAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVVPSQAE 189

Query: 242 QNH-MEE 245
           QN  MEE
Sbjct: 190 QNQRMEE 196

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy TrEMBL
Match: A0A6J1ILW2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111476784 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 2.47e-108
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 245
           REAKKELDQSISLVKAPLALKEDPSLTLPKIK++VEPSQAEQN  MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy TrEMBL
Match: A0A6J1F7I9 (probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC111443073 PE=3 SV=1)

HSP 1 Score: 314 bits (805), Expect = 1.17e-106
Identity = 163/168 (97.02%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRND KIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDTKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPER DRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERCDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 245
           REAKKELDQSISLVKAPLALKEDPSL LPKIKLNVEPSQAEQN  MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLILPKIKLNVEPSQAEQNQSMEE 168

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy TrEMBL
Match: A0A6J1C1W9 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111007521 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 1.23e-101
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRA+RESRHIARRMQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 245
           +EA+KELDQSISLVKAP  LKEDPSLTLPKIK+ V  SQAEQN  MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy TrEMBL
Match: A0A6J1D3M8 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111017299 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 2.49e-101
Identity = 152/163 (93.25%), Postives = 157/163 (96.32%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRA+RESRHIARRMQGKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKGKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQN 241
           +EA+KELDQSISLVKAP  LKEDPSLTLPKIK+ V  SQAEQN
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQN 163

[Close]
BLAST of Cp4.1LG06g01120 vs. ExPASy TrEMBL
Match: A0A0A0LQI2 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 2.64e-100
Identity = 149/176 (84.66%), Postives = 163/176 (92.61%), Query Frame = 0 

Query: 70  KACYLIKKRMRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKW 129
           + CYL+KKRMRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKW
Sbjct: 82  RVCYLLKKRMRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKW 141

Query: 130 TKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARR 189
           TKAYRRLHGKDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR
Sbjct: 142 TKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARR 201

Query: 190 MQGKKAKELREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 245
            QGKKAKE REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 202 HQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

[Close]
BLAST of Cp4.1LG06g01120 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-58
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R++  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 246
            +  KELDQ+I +V+AP A          KIK++V   ++ QN  MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Cp4.1LG06g01120 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-58
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R++  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 246
            +  KELDQ+I +V+AP A          KIK++V   ++ QN  MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Cp4.1LG06g01120 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKK-------IDKVRAERESRHIARRMQ 198
           KD  Q++     R   +P  Y R++   TL  I+K       +     E   R I  R++
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 199 ----GKKAKELREAKKELDQSISLVKAPLALK 220
                KKAK++  A K+     +  KA  A K
Sbjct: 123 KTKDEKKAKKVEFASKQQKVKANFPKAAAASK 152

[Close]
BLAST of Cp4.1LG06g01120 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 71.6 bits (174), Expect = 9.7e-13
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = 0 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAER-ESRHIARRMQGKKAKE 198
           KD  Q++     R   +P  Y R++   TL  I+   K RAE+ E R  AR       +E
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQ---KKRAEKPEVRDAARE---AALRE 122

Query: 199 LREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAE 240
           ++E  K+        K   A K+  S     I  +  P  A+
Sbjct: 123 IKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAK 156

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g01120 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O221654.8e-5769.05Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q86B052.5e-4255.63Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ... [more]
Q3SZ126.9e-4055.24Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2... [more]
Q99L286.9e-4055.24Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P... [more]
Q9UHA39.1e-4055.24Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE... [more]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023535971.12.68e-112100.00probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo][more]
KAG6591317.11.25e-10898.21putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subs... [more]
XP_022976358.15.09e-10897.62probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 pr... [more]
XP_022936461.12.41e-10697.02probable ribosome biogenesis protein RLP24 [Cucurbita moschata] >XP_022936462.1 ... [more]
XP_038905540.13.17e-10688.24probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida][more]
BLAST of Cp4.1LG06g01120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ILW22.47e-10897.62probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1F7I91.17e-10697.02probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1C1W91.23e-10192.26probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1D3M82.49e-10193.25probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0LQI22.64e-10084.66TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=3 ... [more]
BLAST of Cp4.1LG06g01120 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G44860.13.4e-5869.05Ribosomal protein L24e family protein [more]
AT2G44860.23.4e-5869.05Ribosomal protein L24e family protein [more]
AT3G53020.13.3e-1333.55Ribosomal protein L24e family protein [more]
AT2G36620.19.7e-1333.33ribosomal protein L24 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011017TRASH domainSMARTSM007464TRASHcoord: 84..122
e-value: 2.6E-12
score: 56.9
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 79..146
e-value: 6.3E-35
score: 121.0
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 79..143
e-value: 4.5E-34
score: 116.5
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 79..241
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 79..132
e-value: 3.25946E-32
score: 110.355
NoneNo IPR availablePANTHERPTHR10792:SF36BNAA04G10330D PROTEINcoord: 79..241
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 82..134
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 86..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01120.1Cp4.1LG06g01120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042273 ribosomal large subunit biogenesis
cellular_component GO:0005730 nucleolus