Cp4.1LG06g00360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g00360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Plastocyanin
Location	Cp4.1LG06: 238144 .. 238647 (+)
RNA-Seq Expression	Cp4.1LG06g00360
Synteny	Cp4.1LG06g00360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGTCACCTCCGCCACCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCTCCGCCACCGCTTCCAAATCCACCGCCGCCGTCCGCGTCTCCTCCCCCGCGGTCCCCAAGCTGACCGTCAGAGCCTCTCTGAAGGACGTTGGCGTGGCCGTGGCCGCCACCGCCGCCAGTGCCCTCCTGGCCTCAAACGCCTTGGCCATTGAGGTCTTGCTAGGCGGCGACGACGGATCTCTAGCCTTCATTCCAAACGATTTCTCGGTGGCGGCCGGGGAGAAAATCGTGTTCAAGAATAACGCGGGTTTCCCACACAACGTGGTGTTCGACGAGGACGAAATCCCAAGCGGAGTGGACGCCGGCAAGATCTCGATGAACGAGGAAGATCTTCTCAACGCCCCCGGCGAGGTCTACGAAGTCAACCTCACCGAGAAAGGAAGCTACTCCTTCTACTGTTCGCCACATCAAGGAGCTGGAATGGTCGGCAAAGTCACCGTTAACTGA

mRNA sequence

ATGGCCACCGTCACCTCCGCCACCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCTCCGCCACCGCTTCCAAATCCACCGCCGCCGTCCGCGTCTCCTCCCCCGCGGTCCCCAAGCTGACCGTCAGAGCCTCTCTGAAGGACGTTGGCGTGGCCGTGGCCGCCACCGCCGCCAGTGCCCTCCTGGCCTCAAACGCCTTGGCCATTGAGGTCTTGCTAGGCGGCGACGACGGATCTCTAGCCTTCATTCCAAACGATTTCTCGGTGGCGGCCGGGGAGAAAATCGTGTTCAAGAATAACGCGGGTTTCCCACACAACGTGGTGTTCGACGAGGACGAAATCCCAAGCGGAGTGGACGCCGGCAAGATCTCGATGAACGAGGAAGATCTTCTCAACGCCCCCGGCGAGGTCTACGAAGTCAACCTCACCGAGAAAGGAAGCTACTCCTTCTACTGTTCGCCACATCAAGGAGCTGGAATGGTCGGCAAAGTCACCGTTAACTGA

Coding sequence (CDS)

ATGGCCACCGTCACCTCCGCCACCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCTCCGCCACCGCTTCCAAATCCACCGCCGCCGTCCGCGTCTCCTCCCCCGCGGTCCCCAAGCTGACCGTCAGAGCCTCTCTGAAGGACGTTGGCGTGGCCGTGGCCGCCACCGCCGCCAGTGCCCTCCTGGCCTCAAACGCCTTGGCCATTGAGGTCTTGCTAGGCGGCGACGACGGATCTCTAGCCTTCATTCCAAACGATTTCTCGGTGGCGGCCGGGGAGAAAATCGTGTTCAAGAATAACGCGGGTTTCCCACACAACGTGGTGTTCGACGAGGACGAAATCCCAAGCGGAGTGGACGCCGGCAAGATCTCGATGAACGAGGAAGATCTTCTCAACGCCCCCGGCGAGGTCTACGAAGTCAACCTCACCGAGAAAGGAAGCTACTCCTTCTACTGTTCGCCACATCAAGGAGCTGGAATGGTCGGCAAAGTCACCGTTAACTGA

Protein sequence

MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN

Homology

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy Swiss-Prot
Match: P00289 (Plastocyanin, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETE PE=1 SV=2)

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-62
Identity = 127/168 (75.60%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MATV-TSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAAS 60
           MATV +SA VA+PSFTGLK+S +   +TA +  ++ AVP+L+V+ASLK+VG AV ATAA+
Sbjct: 1   MATVASSAAVAVPSFTGLKASGSIKPTTAKIIPTTTAVPRLSVKASLKNVGAAVVATAAA 60

Query: 61  ALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
            LLA NA+A+EVLLGG DGSLAF+P DFSVA+GE+IVFKNNAGFPHNVVFDEDEIPSGVD
Sbjct: 61  GLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVD 120

Query: 121 AGKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISM+EEDLLNAPGE Y+V LTEKG+Y FYCSPHQGAGMVGKVTVN
Sbjct: 121 AAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy Swiss-Prot
Match: P17340 (Plastocyanin, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PETE PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-62
Identity = 128/170 (75.29%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATAS---KSTAAVRVSSPAVPKLTVRASLKDVGVAVAATA 60
           MATVTSA VAIPSFTGLK+ A++S    + A+ +V++  V +LTV+ASLKDVG  VAATA
Sbjct: 1   MATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATA 60

Query: 61  ASALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSG 120
            SA+LASNA+A+EVLLGGDDGSLAFIP +FSV+AGEKI FKNNAGFPHNVVFDEDEIP+G
Sbjct: 61  VSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAG 120

Query: 121 VDAGKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           VDA KISM+EEDLLNA GE Y V L+EKG+Y+FYC+PHQGAGMVGKVTVN
Sbjct: 121 VDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy Swiss-Prot
Match: P00299 (Plastocyanin A, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 9.8e-62
Identity = 123/168 (73.21%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKS-SATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAAS 60
           MATVTSA V+IPSFTGLK+ SA+ +K +A+ +VS+  +P+L+++AS+KDVG AV ATAAS
Sbjct: 1   MATVTSAAVSIPSFTGLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAAS 60

Query: 61  ALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A++ASNA+AI+VLLG DDGSLAF+P++FS++ GEKIVFKNNAGFPHN+VFDED IPSGVD
Sbjct: 61  AMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVD 120

Query: 121 AGKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISM+EEDLLNA GE +EV L+ KG YSFYCSPHQGAGMVGKVTVN
Sbjct: 121 ASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy Swiss-Prot
Match: P42699 (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT112 PE=1 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 9.8e-62
Identity = 125/167 (74.85%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA+VTSATVAIPSFTGLK+S   S +T  ++ ++ A PKLTV++SLK+ GVA  A AAS 
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
            LA NA+AIEVLLGG DGSLAFIPNDFS+A GEKIVFKNNAG+PHNVVFDEDEIPSGVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM+E+DLLN  GE YEV LTE G+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy Swiss-Prot
Match: P11970 (Plastocyanin B, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-59
Identity = 119/168 (70.83%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLK-SSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAAS 60
           MA VTSA V+IPSFTGLK +SA+ +K +A+ +VS+  +P+L+++ASLK+VG AV ATAAS
Sbjct: 1   MAAVTSAAVSIPSFTGLKAASASNAKVSASAKVSASPLPRLSIKASLKEVGAAVVATAAS 60

Query: 61  ALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A++ASNA+A++VLLG DDGSLAF+P++FSV AGEKIVFKNNAGFPHNV+FDED +PSGVD
Sbjct: 61  AMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVD 120

Query: 121 AGKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
             KISM+EEDLLNA GE +EV L++KG Y+FYCSPHQGAGMVGKV VN
Sbjct: 121 VSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168

[Close]

BLAST of Cp4.1LG06g00360 vs. NCBI nr
Match: XP_023534891.1 (plastocyanin [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (782), Expect = 3.41e-104
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA
Sbjct: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. NCBI nr
Match: KAG6591248.1 (Plastocyanin major isoform, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 304 bits (779), Expect = 9.77e-104
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIPSFTGLKSSATASKST+AVRVSSPAVPKLTVRASLKDVGVAVAATAASA
Sbjct: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. NCBI nr
Match: XP_022976282.1 (plastocyanin [Cucurbita maxima])

HSP 1 Score: 302 bits (773), Expect = 8.03e-103
Identity = 164/167 (98.20%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIPSFTGLK+SATASKSTAAVRVSSP+VPKLTVRASLKD+GVAVAATAASA
Sbjct: 1   MATVTSATVAIPSFTGLKTSATASKSTAAVRVSSPSVPKLTVRASLKDLGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. NCBI nr
Match: KAG7024131.1 (Plastocyanin major isoform, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (771), Expect = 1.62e-102
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIPSFTGLKSSATASKST+AVRVSSPAVPKLTVRASLKDVGVAVAATAASA
Sbjct: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISMNEEDLLNA GEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. NCBI nr
Match: XP_022937324.1 (plastocyanin [Cucurbita moschata])

HSP 1 Score: 300 bits (768), Expect = 4.64e-102
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIP+FTGLKS ATASK TAAVRVSSPAVPKLTVRASLKD+GVAVAATAASA
Sbjct: 1   MATVTSATVAIPTFTGLKSPATASKPTAAVRVSSPAVPKLTVRASLKDIGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy TrEMBL
Match: A0A6J1IFB6 (Plastocyanin OS=Cucurbita maxima OX=3661 GN=LOC111476724 PE=3 SV=1)

HSP 1 Score: 302 bits (773), Expect = 3.89e-103
Identity = 164/167 (98.20%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIPSFTGLK+SATASKSTAAVRVSSP+VPKLTVRASLKD+GVAVAATAASA
Sbjct: 1   MATVTSATVAIPSFTGLKTSATASKSTAAVRVSSPSVPKLTVRASLKDLGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy TrEMBL
Match: A0A6J1FAV0 (Plastocyanin OS=Cucurbita moschata OX=3662 GN=LOC111443648 PE=3 SV=1)

HSP 1 Score: 300 bits (768), Expect = 2.25e-102
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIP+FTGLKS ATASK TAAVRVSSPAVPKLTVRASLKD+GVAVAATAASA
Sbjct: 1   MATVTSATVAIPTFTGLKSPATASKPTAAVRVSSPAVPKLTVRASLKDIGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy TrEMBL
Match: A0A5A7VCJ5 (Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001440 PE=3 SV=1)

HSP 1 Score: 271 bits (692), Expect = 8.34e-91
Identity = 146/167 (87.43%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA VTSA VAIPSFTGLKSS++ SK T+A+R+ SPA PKL+VRASLKDVGVAVAATAASA
Sbjct: 1   MAAVTSAAVAIPSFTGLKSSSS-SKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGGDDGSLAF+PN+F+VA+GEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISM+EE+LLNAPGEVYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy TrEMBL
Match: A0A5D3E5P8 (Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007720 PE=3 SV=1)

HSP 1 Score: 268 bits (686), Expect = 6.84e-90
Identity = 145/167 (86.83%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA VTSA VAIPSFTGLKSS++ SK T+A+R+ SPA PKL+VRASLKDVGVAVAATAASA
Sbjct: 1   MAAVTSAAVAIPSFTGLKSSSS-SKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGGDDGSLAF+PN+F+VA+GE IVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGETIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISM+EE+LLNAPGEVYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Cp4.1LG06g00360 vs. ExPASy TrEMBL
Match: A0A1S3CRA6 (Plastocyanin OS=Cucumis melo OX=3656 GN=LOC103503851 PE=3 SV=1)

HSP 1 Score: 268 bits (686), Expect = 6.84e-90
Identity = 145/167 (86.83%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA VTSA VAIPSFTGLKSS++ SK T+A+R+ SPA PKL+VRASLKDVGVAVAATAASA
Sbjct: 1   MAAVTSAAVAIPSFTGLKSSSS-SKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGGDDGSLAF+PN+F+VA+GE IVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGETIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167
           GKISM+EE+LLNAPGEVYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Cp4.1LG06g00360 vs. TAIR 10
Match: AT1G20340.1 (Cupredoxin superfamily protein )

HSP 1 Score: 237.7 bits (605), Expect = 7.0e-63
Identity = 125/167 (74.85%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA+VTSATVAIPSFTGLK+S   S +T  ++ ++ A PKLTV++SLK+ GVA  A AAS 
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
            LA NA+AIEVLLGG DGSLAFIPNDFS+A GEKIVFKNNAG+PHNVVFDEDEIPSGVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM+E+DLLN  GE YEV LTE G+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167

[Close]

BLAST of Cp4.1LG06g00360 vs. TAIR 10
Match: AT1G76100.1 (plastocyanin 1 )

HSP 1 Score: 217.2 bits (552), Expect = 9.7e-57
Identity = 120/174 (68.97%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGL--------KSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVA 60
           MA +TSATV IPSFTGL        K+ +T S+ST+A R    A PKL +++SLKD GV 
Sbjct: 1   MAAITSATVTIPSFTGLKLAVSSKPKTLSTISRSTSATR----APPKLALKSSLKDFGVI 60

Query: 61  VAATAASALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDED 120
             ATAAS +LA NA+A+EVLLG DDGSLAF+P++F+VA GEKIVFKNNAGFPHNVVFDED
Sbjct: 61  AVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDED 120

Query: 121 EIPSGVDAGKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTV 167
           EIPSGVDA KISM+E  LLN  GE YEV LTE GSY FYC+PHQGAGMVGK+TV
Sbjct: 121 EIPSGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g00360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P00289	1.2e-62	75.60	Plastocyanin, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETE PE=1 SV=2	[more]
P17340	1.5e-62	75.29	Plastocyanin, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PETE PE=2 SV=1	[more]
P00299	9.8e-62	73.21	Plastocyanin A, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2	[more]
P42699	9.8e-62	74.85	Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT...	[more]
P11970	1.6e-59	70.83	Plastocyanin B, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2	[more]

BLAST of Cp4.1LG06g00360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534891.1	3.41e-104	100.00	plastocyanin [Cucurbita pepo subsp. pepo]	[more]
KAG6591248.1	9.77e-104	99.40	Plastocyanin major isoform, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
XP_022976282.1	8.03e-103	98.20	plastocyanin [Cucurbita maxima]	[more]
KAG7024131.1	1.62e-102	98.80	Plastocyanin major isoform, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
XP_022937324.1	4.64e-102	97.60	plastocyanin [Cucurbita moschata]	[more]

BLAST of Cp4.1LG06g00360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IFB6	3.89e-103	98.20	Plastocyanin OS=Cucurbita maxima OX=3661 GN=LOC111476724 PE=3 SV=1	[more]
A0A6J1FAV0	2.25e-102	97.60	Plastocyanin OS=Cucurbita moschata OX=3662 GN=LOC111443648 PE=3 SV=1	[more]
A0A5A7VCJ5	8.34e-91	87.43	Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001440 ...	[more]
A0A5D3E5P8	6.84e-90	86.83	Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007720 ...	[more]
A0A1S3CRA6	6.84e-90	86.83	Plastocyanin OS=Cucumis melo OX=3656 GN=LOC103503851 PE=3 SV=1	[more]

BLAST of Cp4.1LG06g00360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20340.1	7.0e-63	74.85	Cupredoxin superfamily protein	[more]
AT1G76100.1	9.7e-57	68.97	plastocyanin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002387	Plastocyanin	PRINTS	PR00157	PLASTOCYANIN	coord: 97..115 score: 83.95 coord: 146..165 score: 80.37 coord: 74..93 score: 62.32
IPR002387	Plastocyanin	TIGRFAM	TIGR02656	TIGR02656	coord: 69..167 e-value: 2.3E-42 score: 141.4
IPR002387	Plastocyanin	CDD	cd04219	Plastocyanin	coord: 69..167 e-value: 3.18298E-49 score: 152.138
IPR001235	Blue (type 1) copper protein, plastocyanin-type	PRINTS	PR00156	COPPERBLUE	coord: 88..101 score: 42.86 coord: 144..158 score: 51.99 coord: 103..118 score: 55.62
IPR000923	Blue (type 1) copper domain	PFAM	PF00127	Copper-bind	coord: 70..167 e-value: 2.0E-34 score: 118.0
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 69..167 e-value: 5.1E-29 score: 102.9
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 67..167
None	No IPR available	PANTHER	PTHR34192:SF11	PLASTOCYANIN	coord: 1..167
None	No IPR available	PANTHER	PTHR34192	PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED	coord: 1..167
IPR028871	Blue (type 1) copper protein, binding site	PROSITE	PS00196	COPPER_BLUE	coord: 146..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g00360.1	Cp4.1LG06g00360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0009055	electron transfer activity