Cp4.1LG06g00260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g00260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	B-like cyclin
Location	Cp4.1LG06: 125963 .. 128326 (+)
RNA-Seq Expression	Cp4.1LG06g00260
Synteny	Cp4.1LG06g00260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAGTCAGTTTTGCCCTTAAAAATGGAATGATGGGACAAAGGGGTACACGCAACCCAATAACCCAACAACTCGGACCAACCCAACTATAGGTTGGATTGGATTAGCATTTCGAATAGAGTTTTGTTGATTTTACTGTGCGTGTTTAGAAATACTCATTTCTTTAAATTAGGTCCCTATTCACGTAAAAAAAAATATTAGAACTGTAACTTACAAAAATCGGACAGGCCAAACGGCAGTTACACGCACGCTCACGCGCCCAAGGTGCGCTGGGAGTGAGAGCCCACGCGCGATGGAGTGCGCCAGTCGCAGGCCAAACGCGCGTCTAGCACGCGCGCCGCTTCTGCGCAGTCGCGGATCGGCCGGCCGGTTCGGCCCGGCTTTGCGTCGACACGTGTCGTCGCCTCGTTGGAGATGATTTTCTCCAGCAGACGGTCGACGCGTGTCCGCGCCTGTCACGCCGCCTGCCGCCGCCTGCCGCCTGCCGCCTGACATTTATTTTATTTTATTTTATTTTTCTTTCTTCTTCTCGCTCTGCGGTCCATAACATTTTTATTTTTGTTTTCTCCTCTTTTTCTTTTCTTGTTCTTCTTCTTCTCTGTTCTCTCCGATCCAAAACACAGCGTCCCTTTCGGATTTTCATGTTTTTCGATTCGTAGATCGGACTGATATGATTTCTTCGGCAAAGTTCTAGCTCATGTTACGGGCTACGTTCTAGTATTTTTTTTGTAATTTTTTTTTTCTTTTGCTTGACTACAGGATGAGTTAAGAGCGTTCGAAGTTCACTCACCGTTCTCGGACGATTCTCGGATCTCCGACTTCGGGTTGAGATCTCGGCCAAACTTCTTCACAGATCTTGCGTAGAGTTGTTCGTGAATATATTAAGAGTTCAGATCTTAATTCACAAAGGAAAACTGTAGATCTGAGAAAACGTTCAAGATCTTACTCGGGGGTTTTTCCGATTTCTTGATGGAAAATGGGAATCCGGCCACCCACATTCTCTTTTTCCTTCCAAGAAAGTCTCCCTGCACATGGTCTTGACCGGAATGGACTCCAACGGTAATTTTCGATGAGTCTGCCGGCCGTTCATTCTTCCACCTCTCTCTCTAGGTTCTCTCTAACTCGTTTCTCTCACTATTTCTTTTTTGCAGGACTCTTGGGGTTTCATTTGGACCCCTAAGTGGTAGGAGGGGCAAACTTACCTATTTGCCCCTCTCTCAACTTTTCATCCGGCGAAAGTGGGGCGTTGACAACGCCAGCGGCGTTCGGCGAAGAGAGAGGGAGGGAAATCAATCCGGCTACTGATGGAAGTTTTTCTAAGTTCTCTCTGCCAGATGAACACAGCTCTCCACAATGGTATGGAATCTGTTGCCGAAGATGATTCTATGGGCGACTCAGCAGTGCCGATGTTTGTTCAACCTACAGAAGCAATGTTGGACGAAATTGACATAATGGTAAGGATTATTCCCTTCTCTTTCGGTATTACTACTTGAACTTGCTGCCATTGACGCGATTTCATAATCCACAGGAGAAGTTGGAAATTAAGGATATAGATGAAGAGCAGGTCATTGATATTAACAGCCTTGATAAGAAGGATCCACTTTGTGTTGTGGAGTACATCAATGACTTGTATACATACTATAGGGCAGCGGAGGTAACAATCTTCCAGACAAGACACGTTGTGTCTGAAACATAAATCCATGTTCGCTTTTTGTTTCTGATCAAGATGTTCCTCCTCCTCGCAGGTTTCTGTCTGTGTTCCACCAAATTACATGGCCCAGCAAGCACATATTAGCGACAGGATGAGAGGGTTTCTCATTGACGGGCTAATAATTGAGGTTAGTTTACTAGTATCCTAGTGAGAGTATTGGGAAAGATCAAGAACATTACCTGTTTGAAACTACTAATCTGCATAATGTTGTGAATTGTCCACTTAATTTTGATTTGGATTTGGATTTTTTTTTAAAAGATCTCATTCCAGCGTAGATAATGATCCTTACTTAACTCACGATCCTCAAGCTTATTTAATTAACTAAATTCGGACTACTCCCAATAATCCTCAAGCTTCATTTTTATTTATTTATGATTAATGTAATTTATGAAGGGACTACCAAAGCAGAACATAATAATTACTTCAAAGGTACACTACAGATTTAAGCTTATGGAAGAGACTGTACCTAACAGTCAACCTCATCGATAGATTCTTAGCAGTATATTCAGTGGCGAAGAAGAATCTCCAGCTAGTTGGAGTGACAGCCATGTTTATAGCCAGCAAGTATGAAGAGGTTTGTTTTTTTGTTATGGACGATTTTATTCAGATATCTGAGAAGGTCTTCGGAGTAAAAGAAATTCTAAACATG

mRNA sequence

ATGGGAAAAATGAACACAGCTCTCCACAATGGTATGGAATCTGTTGCCGAAGATGATTCTATGGGCGACTCAGCAGTGCCGATGTTTGTTCAACCTACAGAAGCAATGTTGGACGAAATTGACATAATGGAGAAGTTGGAAATTAAGGATATAGATGAAGAGCAGGTCATTGATATTAACAGCCTTGATAAGAAGGATCCACTTTGTGTTGTGGAGTACATCAATGACTTGTATACATACTATAGGGCAGCGGAGGTTTCTGTCTGTGTTCCACCAAATTACATGGCCCAGCAAGCACATATTAGCGACAGGATGAGAGGATTCTTAGCAGTATATTCAGTGGCGAAGAAGAATCTCCAGCTAGTTGGAGTGACAGCCATGTTTATAGCCAGCAAGTATGAAGAGATATCTGAGAAGGTCTTCGGAGTAAAAGAAATTCTAAACATG

Coding sequence (CDS)

ATGGGAAAAATGAACACAGCTCTCCACAATGGTATGGAATCTGTTGCCGAAGATGATTCTATGGGCGACTCAGCAGTGCCGATGTTTGTTCAACCTACAGAAGCAATGTTGGACGAAATTGACATAATGGAGAAGTTGGAAATTAAGGATATAGATGAAGAGCAGGTCATTGATATTAACAGCCTTGATAAGAAGGATCCACTTTGTGTTGTGGAGTACATCAATGACTTGTATACATACTATAGGGCAGCGGAGGTTTCTGTCTGTGTTCCACCAAATTACATGGCCCAGCAAGCACATATTAGCGACAGGATGAGAGGATTCTTAGCAGTATATTCAGTGGCGAAGAAGAATCTCCAGCTAGTTGGAGTGACAGCCATGTTTATAGCCAGCAAGTATGAAGAGATATCTGAGAAGGTCTTCGGAGTAAAAGAAATTCTAAACATG

Protein sequence

MGKMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSLDKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFLAVYSVAKKNLQLVGVTAMFIASKYEEISEKVFGVKEILNM

Homology

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy Swiss-Prot
Match: Q9LDM4 (Cyclin-B2-3 OS=Arabidopsis thaliana OX=3702 GN=CYCB2-3 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-26
Identity = 76/175 (43.43%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 18  DDSMGDSAVPMFVQPTEAMLDEIDIMEK-LEIKDID--EEQVIDINSLDKKDPLCVVEYI 77
           D   GDS  PMFVQ TEAML+EI+ MEK +E++D D  EE VIDI++ DK +PL  VEYI
Sbjct: 119 DKEGGDSNEPMFVQHTEAMLEEIEQMEKEIEMEDADKEEEPVIDIDACDKNNPLAAVEYI 178

Query: 78  NDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRG--------------------------- 137
           +D++T+Y+  E   CVPPNYM  Q  +++RMRG                           
Sbjct: 179 HDMHTFYKNFEKLSCVPPNYMDNQQDLNERMRGILIDWLIEVHYKFELMEETLYLTINVI 238

Query: 138 --FLAVYSVAKKNLQLVGVTAMFIASKYEE-----------ISEKVFGVKEILNM 150
             FLAV+ + +K LQLVGVTA+ +A KYEE           IS+K +  +E+L+M
Sbjct: 239 DRFLAVHQIVRKKLQLVGVTALLLACKYEEVSVPVVDDLILISDKAYSRREVLDM 293

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy Swiss-Prot
Match: Q9SFW6 (Cyclin-B2-4 OS=Arabidopsis thaliana OX=3702 GN=CYCB2-4 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-26
Identity = 82/188 (43.62%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 9   HNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIK---DID---EEQVIDINSL 68
           +  ++ +  D   GD   PMFVQ TEAML+EID ME +E++   DID   EE V+DI+S 
Sbjct: 107 NEALDRIITDVEEGDFNEPMFVQHTEAMLEEIDKMEGIEMQDSNDIDAEVEESVMDIDSC 166

Query: 69  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRG--------------- 128
           DK +PL VVEYIND+Y +Y+  E   CVPPNYM  Q  I++RMRG               
Sbjct: 167 DKNNPLSVVEYINDIYCFYKKNECRSCVPPNYMENQHDINERMRGILFDWLIEVHYKFEL 226

Query: 129 --------------FLAVYS-VAKKNLQLVGVTAMFIASKYEE-----------ISEKVF 150
                         FLAV+  +A+K LQLVGVTAM +A KYEE           IS+K +
Sbjct: 227 MEETLYLTINLIDRFLAVHQHIARKKLQLVGVTAMLLACKYEEVSVPVVDDLILISDKAY 286

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy Swiss-Prot
Match: P46277 (G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia OX=36902 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.4e-24
Identity = 68/155 (43.87%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 17  EDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSLDKKDPLCVVEYIND 76
           E   + D  VPM ++ TE M  E D ME++E++DI EE V+DI++ D  DPL V EYI D
Sbjct: 116 EHKPVEDQPVPMALEQTEPMHSESDQMEEVEMEDIMEEPVMDIDTPDANDPLAVAEYIED 175

Query: 77  LYTYYRAAEVSVCVPPNYMAQQAHISDRMRG----------------------------- 136
           LY+YYR  E + CV PNYMAQQ  I++RMR                              
Sbjct: 176 LYSYYRKVESTSCVSPNYMAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDR 235

Query: 137 FLAVYSVAKKNLQLVGVTAMFIASKYEEISEKVFG 143
           FL   SV +K LQLVG+ AM +A KYEE+S  V G
Sbjct: 236 FLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVG 270

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy Swiss-Prot
Match: P30286 (G2/mitotic-specific cyclin-1 (Fragment) OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-18
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 17  EDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSLDKKDPLCVVEYIND 76
           E   + D  VPM ++ TE M  E D ME++E++DI EE V+DI++ D  DPL V EYI D
Sbjct: 116 EHKPVEDQPVPMALEQTEPMHSESDQMEEVEMEDIMEEPVMDIDTPDANDPLAVAEYIED 175

Query: 77  LYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 110
           LY+YYR  E + CV PNYMAQQ  I++RMR  L
Sbjct: 176 LYSYYRKVESTSCVSPNYMAQQFDINERMRAIL 208

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy Swiss-Prot
Match: P46278 (G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia OX=36902 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-18
Identity = 61/159 (38.36%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 14  SVAEDD---SMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSLDKKDPLCV 73
           S+A DD   S  D   PM ++ TE M  +   ME++E++DI+ E ++DI+S D  + L V
Sbjct: 114 SIAIDDELKSPEDQPEPMTLEHTEPMHSDPLEMEEVEMEDIEGEMILDIDSCDANNSLAV 173

Query: 74  VEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRG----------------------- 133
           VEYI DL+ YYR  E   CV P YM +Q  +++RMR                        
Sbjct: 174 VEYIEDLHAYYRKIEYLGCVSPTYMDEQLDLNERMRAILVDWLIEVHDKFDLMQETLFLT 233

Query: 134 ------FLAVYSVAKKNLQLVGVTAMFIASKYEEISEKV 141
                 FLA  +V +K LQLVG+ AM +A KYEE+S  V
Sbjct: 234 VNLIDRFLAKQNVVRKKLQLVGLVAMLLACKYEEVSVPV 272

[Close]

BLAST of Cp4.1LG06g00260 vs. NCBI nr
Match: XP_023536338.1 (G2/mitotic-specific cyclin-1-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (537), Expect = 8.59e-68
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL
Sbjct: 10  QMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 69

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 109
           DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL
Sbjct: 70  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 116

[Close]

BLAST of Cp4.1LG06g00260 vs. NCBI nr
Match: XP_023536337.1 (cyclin-B2-4-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (537), Expect = 1.95e-67
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL
Sbjct: 10  QMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 69

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 109
           DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL
Sbjct: 70  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 116

[Close]

BLAST of Cp4.1LG06g00260 vs. NCBI nr
Match: XP_023536336.1 (cyclin-B2-4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (537), Expect = 2.30e-67
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL
Sbjct: 10  QMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 69

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 109
           DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL
Sbjct: 70  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 116

[Close]

BLAST of Cp4.1LG06g00260 vs. NCBI nr
Match: XP_023536335.1 (cyclin-B2-4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211 bits (537), Expect = 2.54e-67
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL
Sbjct: 10  QMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 69

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 109
           DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL
Sbjct: 70  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 116

[Close]

BLAST of Cp4.1LG06g00260 vs. NCBI nr
Match: XP_022936787.1 (cyclin-B2-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 202 bits (515), Expect = 1.63e-62
Identity = 114/175 (65.14%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNT LHNGMES AEDDSMGDSA PMFVQ TEAMLD+ID M+KLEI+D+DEE VIDI+SL
Sbjct: 72  QMNTTLHNGMESAAEDDSMGDSAGPMFVQHTEAMLDDIDRMQKLEIEDVDEE-VIDIDSL 131

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL------------- 122
           D KDPLCVVEYI+DLYT+YRAAEVSVCVPPNYMAQQ HI+DRMRGFL             
Sbjct: 132 DMKDPLCVVEYIDDLYTHYRAAEVSVCVPPNYMAQQVHINDRMRGFLVDWLIIEFMKELT 191

Query: 123 ----------------------------AVYSVAKKNLQLVGVTAMFIASKYEEI 136
                                       AV+SVAKKNL+LVGVTAMFIASKYEE+
Sbjct: 192 KHNIMIASRFKLMEETLYLTVSLIDRLLAVHSVAKKNLRLVGVTAMFIASKYEEV 245

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy TrEMBL
Match: A0A6J1F9D3 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 7.90e-63
Identity = 114/175 (65.14%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNT LHNGMES AEDDSMGDSA PMFVQ TEAMLD+ID M+KLEI+D+DEE VIDI+SL
Sbjct: 72  QMNTTLHNGMESAAEDDSMGDSAGPMFVQHTEAMLDDIDRMQKLEIEDVDEE-VIDIDSL 131

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL------------- 122
           D KDPLCVVEYI+DLYT+YRAAEVSVCVPPNYMAQQ HI+DRMRGFL             
Sbjct: 132 DMKDPLCVVEYIDDLYTHYRAAEVSVCVPPNYMAQQVHINDRMRGFLVDWLIIEFMKELT 191

Query: 123 ----------------------------AVYSVAKKNLQLVGVTAMFIASKYEEI 136
                                       AV+SVAKKNL+LVGVTAMFIASKYEE+
Sbjct: 192 KHNIMIASRFKLMEETLYLTVSLIDRLLAVHSVAKKNLRLVGVTAMFIASKYEEV 245

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy TrEMBL
Match: A0A6J1FE79 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 7.14e-61
Identity = 114/175 (65.14%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNT LHNGMES AEDDSMGDSA PMFVQ TEAMLD+ID M KLEI+D+DEE VIDI+SL
Sbjct: 72  QMNTTLHNGMESAAEDDSMGDSAGPMFVQHTEAMLDDIDRM-KLEIEDVDEE-VIDIDSL 131

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL------------- 122
           D KDPLCVVEYI+DLYT+YRAAEVSVCVPPNYMAQQ HI+DRMRGFL             
Sbjct: 132 DMKDPLCVVEYIDDLYTHYRAAEVSVCVPPNYMAQQVHINDRMRGFLVDWLIIEFMKELT 191

Query: 123 ----------------------------AVYSVAKKNLQLVGVTAMFIASKYEEI 136
                                       AV+SVAKKNL+LVGVTAMFIASKYEE+
Sbjct: 192 KHNIMIASRFKLMEETLYLTVSLIDRLLAVHSVAKKNLRLVGVTAMFIASKYEEV 244

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy TrEMBL
Match: A0A6J1F8G7 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 5.14e-54
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNT LHNGMES AEDDSMGDSA PMFVQ TEAMLD+ID M+KLEI+D+DEE VIDI+SL
Sbjct: 72  QMNTTLHNGMESAAEDDSMGDSAGPMFVQHTEAMLDDIDRMQKLEIEDVDEE-VIDIDSL 131

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 109
           D KDPLCVVEYI+DLYT+YRAAEVSVCVPPNYMAQQ HI+DRMRGFL
Sbjct: 132 DMKDPLCVVEYIDDLYTHYRAAEVSVCVPPNYMAQQVHINDRMRGFL 177

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy TrEMBL
Match: A0A6J1FEQ4 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 1.76e-53
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 3   KMNTALHNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSL 62
           +MNT LHNGMES AEDDSMGDSA PMFVQ TEAMLD+ID M+KLEI+D+DEE VIDI+SL
Sbjct: 72  QMNTTLHNGMESAAEDDSMGDSAGPMFVQHTEAMLDDIDRMQKLEIEDVDEE-VIDIDSL 131

Query: 63  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRGFL 109
           D KDPLCVVEYI+DLYT+YRAAEVSVCVPPNYMAQQ HI+DRMRGFL
Sbjct: 132 DMKDPLCVVEYIDDLYTHYRAAEVSVCVPPNYMAQQVHINDRMRGFL 177

[Close]

BLAST of Cp4.1LG06g00260 vs. ExPASy TrEMBL
Match: A0A6J1IGS6 (B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111476814 PE=3 SV=1)

HSP 1 Score: 164 bits (414), Expect = 1.17e-47
Identity = 103/183 (56.28%), Postives = 110/183 (60.11%), Query Frame = 0


Query: 21  MGDSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQVIDINSLDKKDPLCVVEYINDLYTY 80
           MGDSAVPMFVQ TEAMLD I   EKLEIKD+DEE VIDI+SLDKKDPL VVEYI+DLYTY
Sbjct: 1   MGDSAVPMFVQHTEAMLDVIHRTEKLEIKDVDEEPVIDIDSLDKKDPLRVVEYIDDLYTY 60

Query: 81  YRAAEVSVCVPPNYMAQQAHISDRMRGFLAVYSVA------------------------- 140
            RAAEVSVCVPPNYMAQQ HIS+RMR FL  + +                          
Sbjct: 61  CRAAEVSVCVPPNYMAQQTHISERMRRFLIDWLIIEFMKELTKQNIMIALKVHYKFKLME 120

Query: 141 ------------------KKNLQLVGVTAMFIASKYEE-----------ISEKVFGVKEI 149
                             KK LQLVGVTAMFIA KY+E           ISEK F  KEI
Sbjct: 121 EILYLTVNLVDRFLAVQEKKKLQLVGVTAMFIACKYKEVCFLVMDDFIQISEKAFRAKEI 180

[Close]

BLAST of Cp4.1LG06g00260 vs. TAIR 10
Match: AT1G20610.1 (Cyclin B2;3 )

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 76/175 (43.43%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 18  DDSMGDSAVPMFVQPTEAMLDEIDIMEK-LEIKDID--EEQVIDINSLDKKDPLCVVEYI 77
           D   GDS  PMFVQ TEAML+EI+ MEK +E++D D  EE VIDI++ DK +PL  VEYI
Sbjct: 119 DKEGGDSNEPMFVQHTEAMLEEIEQMEKEIEMEDADKEEEPVIDIDACDKNNPLAAVEYI 178

Query: 78  NDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRG--------------------------- 137
           +D++T+Y+  E   CVPPNYM  Q  +++RMRG                           
Sbjct: 179 HDMHTFYKNFEKLSCVPPNYMDNQQDLNERMRGILIDWLIEVHYKFELMEETLYLTINVI 238

Query: 138 --FLAVYSVAKKNLQLVGVTAMFIASKYEE-----------ISEKVFGVKEILNM 150
             FLAV+ + +K LQLVGVTA+ +A KYEE           IS+K +  +E+L+M
Sbjct: 239 DRFLAVHQIVRKKLQLVGVTALLLACKYEEVSVPVVDDLILISDKAYSRREVLDM 293

[Close]

BLAST of Cp4.1LG06g00260 vs. TAIR 10
Match: AT1G76310.1 (CYCLIN B2;4 )

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 82/188 (43.62%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 9   HNGMESVAEDDSMGDSAVPMFVQPTEAMLDEIDIMEKLEIK---DID---EEQVIDINSL 68
           +  ++ +  D   GD   PMFVQ TEAML+EID ME +E++   DID   EE V+DI+S 
Sbjct: 107 NEALDRIITDVEEGDFNEPMFVQHTEAMLEEIDKMEGIEMQDSNDIDAEVEESVMDIDSC 166

Query: 69  DKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRG--------------- 128
           DK +PL VVEYIND+Y +Y+  E   CVPPNYM  Q  I++RMRG               
Sbjct: 167 DKNNPLSVVEYINDIYCFYKKNECRSCVPPNYMENQHDINERMRGILFDWLIEVHYKFEL 226

Query: 129 --------------FLAVYS-VAKKNLQLVGVTAMFIASKYEE-----------ISEKVF 150
                         FLAV+  +A+K LQLVGVTAM +A KYEE           IS+K +
Sbjct: 227 MEETLYLTINLIDRFLAVHQHIARKKLQLVGVTAMLLACKYEEVSVPVVDDLILISDKAY 286

[Close]

BLAST of Cp4.1LG06g00260 vs. TAIR 10
Match: AT4G35620.1 (Cyclin B2;2 )

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-16
Identity = 54/147 (36.73%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 23  DSAVPMFVQPTEAMLDEIDIMEKLEIKDIDEEQ---VIDINSLDKKDPLCVVEYINDLYT 82
           D  +PM ++      D ++  E++E++D++EEQ   V+DI+  D  + L  VEY+ DLY 
Sbjct: 121 DQPMPMSLEEPYIEFDPME--EEVEMEDMEEEQEEPVLDIDEYDANNSLAAVEYVQDLYD 180

Query: 83  YYRAAEVSVCVPPNYMAQQAHISDRMRG-----------------------------FLA 138
           +YR  E   CVP +YMAQQ  ISD+MR                              FL+
Sbjct: 181 FYRKTERFSCVPLDYMAQQFDISDKMRAILIDWLIEVHDKFELMNETLFLTVNLIDRFLS 240

[Close]

BLAST of Cp4.1LG06g00260 vs. TAIR 10
Match: AT2G17620.1 (Cyclin B2;1 )

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 58/169 (34.32%), Postives = 84/169 (49.70%), Query Frame = 0


Query: 14  SVAEDDSMGDSAVPMFVQPTEAMLD------------EIDIMEKLEIKDID-EEQVIDIN 73
           SV   +  GD    +F+   EA LD            E D ME++E++D+  EE ++DI+
Sbjct: 102 SVPSANDFGDC---IFIDEEEATLDLPMPMSLEKPYIEADPMEEVEMEDVTVEEPIVDID 161

Query: 74  SLDKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMRG------------- 133
            LD K+ L  VEY+ DLY +YR  E   CVP +YM QQ  ++++MR              
Sbjct: 162 VLDSKNSLAAVEYVQDLYAFYRTMERFSCVPVDYMMQQIDLNEKMRAILIDWLIEVHDKF 221

Query: 134 ----------------FLAVYSVAKKNLQLVGVTAMFIASKYEEISEKV 141
                           FL+  +V +K LQLVG+ A+ +A KYEE+S  V
Sbjct: 222 DLINETLFLTVNLIDRFLSKQNVMRKKLQLVGLVALLLACKYEEVSVPV 267

[Close]

BLAST of Cp4.1LG06g00260 vs. TAIR 10
Match: AT4G37490.1 (CYCLIN B1;1 )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 53  EEQVIDINSLDKKDPLCVVEYINDLYTYYRAAEVSVCVPPNYMAQQAHISDRMR------ 112
           +E+++DI+S D ++ L  VEY+ D+Y++Y++ E S   P +YMA Q  I+++MR      
Sbjct: 145 KEKIVDIDSADVENDLAAVEYVEDIYSFYKSVE-SEWRPRDYMASQPDINEKMRLILVEW 204

Query: 113 -----------------------GFLAVYSVAKKNLQLVGVTAMFIASKYEEI 137
                                   FL+V  V +K LQLVG++A+ +++KYEEI
Sbjct: 205 LIDVHVRFELNPETFYLTVNILDRFLSVKPVPRKELQLVGLSALLMSAKYEEI 256

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g00260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDM4	2.0e-26	43.43	Cyclin-B2-3 OS=Arabidopsis thaliana OX=3702 GN=CYCB2-3 PE=2 SV=2	[more]
Q9SFW6	2.0e-26	43.62	Cyclin-B2-4 OS=Arabidopsis thaliana OX=3702 GN=CYCB2-4 PE=2 SV=2	[more]
P46277	9.4e-24	43.87	G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia OX=36902 PE=2 SV=1	[more]
P30286	3.5e-18	52.69	G2/mitotic-specific cyclin-1 (Fragment) OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P46278	7.7e-18	38.36	G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia OX=36902 PE=2 SV=1	[more]

BLAST of Cp4.1LG06g00260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536338.1	8.59e-68	99.07	G2/mitotic-specific cyclin-1-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023536337.1	1.95e-67	99.07	cyclin-B2-4-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023536336.1	2.30e-67	99.07	cyclin-B2-4-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023536335.1	2.54e-67	99.07	cyclin-B2-4-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022936787.1	1.63e-62	65.14	cyclin-B2-3-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG06g00260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9D3	7.90e-63	65.14	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1	[more]
A0A6J1FE79	7.14e-61	65.14	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1	[more]
A0A6J1F8G7	5.14e-54	84.11	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1	[more]
A0A6J1FEQ4	1.76e-53	84.11	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111443270 PE=4 SV=1	[more]
A0A6J1IGS6	1.17e-47	56.28	B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111476814 PE=3 SV=1	[more]

BLAST of Cp4.1LG06g00260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20610.1	1.4e-27	43.43	Cyclin B2;3	[more]
AT1G76310.1	1.4e-27	43.62	CYCLIN B2;4	[more]
AT4G35620.1	2.0e-16	36.73	Cyclin B2;2	[more]
AT2G17620.1	3.3e-16	34.32	Cyclin B2;1	[more]
AT4G37490.1	2.1e-10	33.63	CYCLIN B1;1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 108..137 e-value: 1.6E-7 score: 31.1
None	No IPR available	GENE3D	1.10.472.10		coord: 108..137 e-value: 4.3E-9 score: 37.8
None	No IPR available	PANTHER	PTHR10177:SF494	CYCLIN-B2-3-RELATED	coord: 108..138
None	No IPR available	PANTHER	PTHR10177:SF494	CYCLIN-B2-3-RELATED	coord: 15..109
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINS	coord: 108..138
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINS	coord: 15..109
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 108..149 e-value: 1.04426E-6 score: 42.2257
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 65..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g00260.1	Cp4.1LG06g00260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
cellular_component	GO:0005622	intracellular anatomical structure