Cp4.1LG05g15720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g15720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
LocationCp4.1LG05: 10801949 .. 10805842 (-)
RNA-Seq ExpressionCp4.1LG05g15720
SyntenyCp4.1LG05g15720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCAACTTGCTTTACAAACTTGTCCAATTCGTATCCCAACTCATTACAAGTTTTCTTCCATGCTTGGAACTTCTCTATGTGTTCTATACAATACAATAGTTACAAAGCATTTGAAGTTTATGAACACATAAGTGATAAAATCCAAAGAAAAAAAGATTGCAGTTGATTTATAGCCATGGCAATCGCAAAGAACATGAAAATATGTCACAAACCCTAGTCGTCTGGGTCCCTCCCTTTCTTTTCAGATTTAACGCCTTCTCTGCGCTCCATCTTTTACTACCGCGCAGTGTCGCTGCCGCTTGCATTTCTTGACTTGTTGTCTCACTCCCTTAGATCTTCTTCCTCTCTTGATCTCAGGTACTCTTATCGGTCTCTATCTCTCTCTCTCTCTCTCATCACAGTTTCTTCCCCCCCTTCCATTGACGTGCTGGTTGGCGGGAGAAATTTAATTCCTGTTGTTTTTTTTTTTCTTCACATGTGGGATTGTTGTTGGGGTTGGTAGATAACAACTTGCGTAGTGGTTGTAGTAGTAGTTGGGCCTTGTTTATCTTTCATAAACTTTTTCAGTTTGCTATTTGGAATTGACGATCATCTATAAAATATCTTGCACCCACTTGAAAACACTGTTAGCTTGGACTAGCCTGGTCAGTTGATTATCTTCTTCACACTGTGTTCTACCAAAACCCTACATTTCGTGTTTCCTCCGTTATCATGAAGCTCGTTAGGTATGCCATTTTCTTTTATCTCCTTCAATTCTTCTTTGAAGTTTTTTTTCTTGATTTATTCATTGTTCACAACATTGAATGGTTGTTTTGATGTTAAGAAACTTTGTTTTGATGAATGGACAGGTTTTTAATGAAACTCAATAATGAGACTGTCTCAATCGAGCTTAAAAATGGAACTGTGGTCCATGGCACCATCACAGGTTTCCATCTCTCTTCCACTCGCAACATCCTCTGCATAAAACTTAGAATTAATGTGGCGAAACTAACTTAGATTTAATCTGGTGAGACCCTAGTTTTATGATTTTGCAGGCAAAGCATTTTAAAACTTCAAGTCCAATTCTATTTTCTTCATTATATTCAACTATTATCTGAAGTTGCCTAGCATTTCGGTCCAAAGTATAATTGGAATTTGAACTACACTGTCAATTTTGAGTGGTTTATGAAGTAGCATAGCATTCTTAATATCCTTAAACTACATTGATCCCTATTTGTATTGCTGTTAAATTTGATAATAATGATCTTTCACTAAAACCTATTGCATGCAATAGTAGGGTTACTATTACAAGTCTAAATTAGCTAGCAACCTCTTTTGATCTGAGTGGTAAGAGTCTGAGAGTCTTGTTGAAGGAGGATTTTGACAGCAACTATGCTACTCTGTTGTTTTTTAGGTGAAAAATAAATTTCAATCATCAATAAAATTTAAATAAATCATTGGATACTAGGTGATAAATTAGGGAGGTCAACTACTTCCCTTACTTGATGGGATTACACAAATATTCTTTGACACTCCACCTCTAGCTAAGAAATAGATATCATTCATTCTGAGCTTGGATATTAACTCATGAAGTAGTAAGTTGTAAAGTTTTTTTGTCATCCATCTATCAGATGAAGCTGTGAGAGCACGTAACTTATGCGTACTATCCCTTTGGAGCACTTCAATGGGCGTTACTGGCCTCTCTCATAATCACTTCTCTTGGAGTACTTCCATGGGCGTCACTTGCCTCTCTCGTGCTCTCTCCTCTTAGAGCACTTTCACGGGTGTCGCATGCCTCTTTCTTCTTGTAGCACTTCCACGGGCATCTCTTTCCTCTAGTGTTCTTTCCTCTTAGAGAACATTCAGGAGTGTTGCTTGACTCTCTGGTGCTCTTTCCTCAGGGAGAACTTCCATGGGCATCACTTGCCTCTCTCATGCTCATATGCTTTCTTCTCTTGGAACACTTCTATGCTGTTGCTCGTCTCTCTCGTGCTCATTCCTGTTGGAGCACTTCCATAGGTTTTGTTTGTCTCTCTGTTGCTCACTCCTGTTGGGGCACTTCCATAGGTTGCTTGCCTATCTCGTGCTCTCTCCTGTTAGAGCACTTCCACGAGCATCGCTCACCTCTCTCGTGCTCACTGCGATTATTGGCGGTACTGTCATTAATGTTGGCGGCTCATGCGACAGTGGAATACAGTGGCTGTTGGCGTGAGTGGGCAGTAGTGGACTTGATGTGATAGTGGTTTGAGGGCATTCTTGCGGCTTGGAAGCAAAAGCAGAAAGTTGGACTTACGCCTTTGCAATGGTGACCTTGCGGGACTGTGATACTCGATTGTGTGAGTTACTGTGATATACTCGGTTGAAAGCAAGAAGTAGAGCAGCGAATGGTTGGTTACTGTAATGCACAGAAGGTCGGCAACTAAGAAGGCTCTGAATGAAACTTATCACGATGGATTATCAGTGGTTATGAAGGTTTCACCGATTGAGTTAGTGGTTAGTTTTAGGCTCTGATACCATGTTGCAAAGTCTAAATTAGCTAGTAACTTCTTTTGATTTGAGCAACAAAGATAGAGTCTTATTGTCGGAGGATTTTGATGGCAGTTACGCTTTGATACCATTTGCAAGTCTTAATTAGCTTGTTATTGTTTTCGAAGTAACATTAAATCTAAATAAATCCCAGGATACTAGGTGAAAAATTGGGGAGGTTAACTACTTCTCTTATTTAATGGGATTACACAAATATTCTTCAACACTCCCCCTCAAGCTGAGAAATAGATATCATTCTTTCTCAGCTTAGACGCTAACTCATGAATTACACAATATCTCTTAAGGCTAATTCTTCGACAACTACTTTAAAGTTTAGTATGTGACTAGTGCACAACTCCCTGACCTATAGAGGCTTCTAGATTTTTCAAAGATATGTTTCACAGAGGAACATTGCAATTGTCTTTACCTCATCTCTCTCCCCCAACCTCTGCCTTTCCACATCGATCATGGATCACCTAGTCTCCATCAAGCTTTCTAGCAAAAGTAGAAAGGACTAACCCTCCCCATTCCTCCATGATTGAAAGAAGGCTCTAGACCATTGAGATTGGCGATAGATAGGCTCTCGAGCACAATTGAGTTTACATAATTAACCACTCAGTGAGTTTGCCCGTTCTGAGACTCTTGAGGCAATTAGAATATTATAATTTTAGTTGGTTACATCTTCTGTTGGAGAATTTTTTTTCACTCGAGACAACTAGCATCCGTCTATAAAACAATATGTTTGCACAAATACTTCTGAAACATATGTTATTTAGATGACTTGCATAGAGAGGGAGACTAACACCAGATCGCACCGCAGCTGCTAAGTTTAGATATTGTAATATTCGATCACATTGCATGACCGTAAAGTAGATTCTGCACGTATTCTTTTTACTTTCTGTTAAGTTCTGGTCAAGTATAGTTCTGACAGGATAATTTTCTTGTATTACTTAGGTGTGGATATTAGCATGAATACACATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCCATTACCATGGATCATTTAAGTGTGAGGGGTAACAGCATCAGATATTATATTCTCCCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACAACCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGCGTTGTTCTTGTATTCTGGCTTGTGCATCAATCCCTGCAACTGCTTATGTATTTGTTTTCCTCTTCTGCAACTGTAGGGAAGCCTTTGGGACGGGGGCGTGGACGGGGGCGGGGGCGTGGTCGGGGGCGAGGGCGCTAGACTAGCTGCAGCTTCAATTTTTGTGCCATGTAGTCTTGCCATGTATTTCTGGAAGTTTATAAAATTAGTGAAGTGGAGAATGACAATTCACTGTTTTT

mRNA sequence

TATCAACTTGCTTTACAAACTTGTCCAATTCGTATCCCAACTCATTACAAGTTTTCTTCCATGCTTGGAACTTCTCTATGTGTTCTATACAATACAATAGTTACAAAGCATTTGAAGTTTATGAACACATAAGTGATAAAATCCAAAGAAAAAAAGATTGCAGTTGATTTATAGCCATGGCAATCGCAAAGAACATGAAAATATGTCACAAACCCTAGTCGTCTGGGTCCCTCCCTTTCTTTTCAGATTTAACGCCTTCTCTGCGCTCCATCTTTTACTACCGCGCAGTGTCGCTGCCGCTTGCATTTCTTGACTTGTTGTCTCACTCCCTTAGATCTTCTTCCTCTCTTGATCTCAGGTACTCTTATCGGTCTCTATCTCTCTCTCTCTCTCTCATCACAGTTTCTTCCCCCCCTTCCATTGACGTGCTGGTTGGCGGGAGAAATTTAATTCCTGTTGTTTTTTTTTTTCTTCACATGTGGGATTGTTGTTGGGGTTGGTAGATAACAACTTGCGTAGTGGTTGTAGTAGTAGTTGGGCCTTGTTTATCTTTCATAAACTTTTTCAGTTTGCTATTTGGAATTGACGATCATCTATAAAATATCTTGCACCCACTTGAAAACACTGTTAGCTTGGACTAGCCTGGTCAGTTGATTATCTTCTTCACACTGTGTTCTACCAAAACCCTACATTTCGTGTTTCCTCCGTTATCATGAAGCTCGTTAGGTTTTTAATGAAACTCAATAATGAGACTGTCTCAATCGAGCTTAAAAATGGAACTGTGGTCCATGGCACCATCACAGGTGTGGATATTAGCATGAATACACATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCCATTACCATGGATCATTTAAGTGTGAGGGGTAACAGCATCAGATATTATATTCTCCCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACAACCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAAGCCTTTGGGACGGGGGCGTGGACGGGGGCGGGGGCGTGGTCGGGGGCGAGGGCGCTAGACTAGCTGCAGCTTCAATTTTTGTGCCATGTAGTCTTGCCATGTATTTCTGGAAGTTTATAAAATTAGTGAAGTGGAGAATGACAATTCACTGTTTTT

Coding sequence (CDS)

ATGAAGCTCGTTAGGTTTTTAATGAAACTCAATAATGAGACTGTCTCAATCGAGCTTAAAAATGGAACTGTGGTCCATGGCACCATCACAGGTGTGGATATTAGCATGAATACACATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCCATTACCATGGATCATTTAAGTGTGAGGGGTAACAGCATCAGATATTATATTCTCCCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACAACCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAAGCCTTTGGGACGGGGGCGTGGACGGGGGCGGGGGCGTGGTCGGGGGCGAGGGCGCTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Homology
[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.3e-51
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNP+T+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGK-PLGRGRGRGRGRGRGRG 114
           RGN+IRYYILPDSLNLETLLVE+T R+KPKKPTAGK P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.6e-50
Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNP+T+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGN+IRYYILPDSLNLETLLVE+T RVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37
Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + P+ ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGN+IRY+ILPDSL L+TLLV+   +VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37
Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + P+ ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGN+IRY+ILPDSL L+TLLV+   +VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37
Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + P+ ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGN+IRY+ILPDSL L+TLLV+   +VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_022947377.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_022970690.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita maxima] >XP_023532066.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >XP_023532067.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG6604704.1 Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034835.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215 bits (548), Expect = 3.17e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_022931093.1 (small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small nuclear ribonucleoprotein SmD1b [Cucurbita maxima] >XP_023533992.1 small nuclear ribonucleoprotein SmD1b [Cucurbita pepo subsp. pepo] >KAG7036369.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (538), Expect = 1.06e-68
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG7011241.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (536), Expect = 2.15e-68
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus])

HSP 1 Score: 210 bits (535), Expect = 3.05e-68
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGN+IRYYILPDSLNLETLLVEET RVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_012473940.1 (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii] >XP_017624320.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium arboreum] >XP_028086932.1 small nuclear ribonucleoprotein SmD1a [Camellia sinensis] >XP_040955759.1 small nuclear ribonucleoprotein SmD1a-like [Gossypium hirsutum] >KAA3471122.1 small nuclear ribonucleoprotein Sm D1-like [Gossypium australe] >KAB2016212.1 hypothetical protein ES319_D08G080300v1 [Gossypium barbadense] >MBA0762809.1 hypothetical protein [Gossypium trilobum] >TYI68344.1 hypothetical protein E1A91_D08G082500v1 [Gossypium mustelinum] >KAG4133137.1 hypothetical protein ERO13_D08G076900v2 [Gossypium hirsutum])

HSP 1 Score: 210 bits (534), Expect = 4.33e-68
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNP+TMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1I3K7 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111469600 PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 1.54e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1G6A2 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111451260 PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 1.54e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1)

HSP 1 Score: 211 bits (538), Expect = 5.15e-69
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1EXE6 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437383 PE=3 SV=1)

HSP 1 Score: 211 bits (538), Expect = 5.15e-69
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1HJI3 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111464127 PE=3 SV=1)

HSP 1 Score: 211 bits (536), Expect = 1.04e-68
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
           RGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-52
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNP+T+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGK-PLGRGRGRGRGRGRGRG 114
           RGN+IRYYILPDSLNLETLLVE+T R+KPKKPTAGK P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-51
Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNP+T+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGN+IRYYILPDSLNLETLLVE+T RVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-51
Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNP+T+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGN+IRYYILPDSLNLETLLVE+T RVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-49
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGK-PLGRGRGRGRGRG 114
           NP+T+DHLSVRGN+IRYYILPDSLNLETLLVE+T R+KPKKPTAGK P GRGRGRGRGRG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRG 120

[Close]
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 40/98 (40.82%), Postives = 51/98 (52.04%), Query Frame = 0 

Query: 17  IELKNGTVVHGTITGVDISMNTHLKAVKLTLK-GKNPITMDHLSVRGNSIRYYILPDSLN 76
           +ELKNG   +G +   D  MN HL+ V  T K G     M    +RGN+I+Y  +PD   
Sbjct: 17  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--E 76

Query: 77  LETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRG 114
           +   + EE TR   K P  G+  GRG   G  RGRGRG
Sbjct: 77  VIDKVQEEKTRTDRKPPGVGRGRGRGVDDGGARGRGRG 112

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SY095.3e-5191.23Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P... [more]
Q9SSF12.6e-5088.60Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P... [more]
Q3ZC102.6e-3772.81Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1[more]
P623142.6e-3772.81Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=... [more]
Q4R5F62.6e-3772.81Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P... [more]
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947377.13.17e-70100.00small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_022970690.1 ... [more]
XP_022931093.11.06e-6897.37small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small... [more]
XP_022963993.12.15e-6896.49small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 ... [more]
XP_004150106.13.05e-6896.49small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTE... [more]
XP_012473940.14.33e-6896.49PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii] >XP_... [more]
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I3K71.54e-70100.00Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11146960... [more]
A0A6J1G6A21.54e-70100.00Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111451... [more]
A0A6J1K0705.15e-6997.37Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11149127... [more]
A0A6J1EXE65.15e-6997.37Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437... [more]
A0A6J1HJI31.04e-6896.49Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111464... [more]
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02840.13.8e-5291.23Small nuclear ribonucleoprotein family protein [more]
AT3G07590.11.9e-5188.60Small nuclear ribonucleoprotein family protein [more]
AT3G07590.21.9e-5188.60Small nuclear ribonucleoprotein family protein [more]
AT4G02840.21.0e-4983.87Small nuclear ribonucleoprotein family protein [more]
AT5G27720.11.3e-0740.82Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 4.1E-16
score: 69.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..69
e-value: 1.0E-17
score: 63.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..50
e-value: 2.6E-19
score: 71.4
coord: 51..82
e-value: 1.1E-10
score: 43.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..114
NoneNo IPR availablePANTHERPTHR23338:SF50SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..110
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..110
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..93
e-value: 2.06555E-55
score: 165.476
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g15720.1Cp4.1LG05g15720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0006396 RNA processing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003723 RNA binding