Cp4.1LG05g15240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g15240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase COP1
Location	Cp4.1LG05: 10534707 .. 10538619 (+)
RNA-Seq Expression	Cp4.1LG05g15240
Synteny	Cp4.1LG05g15240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCGTTTGTTACGATCGATGGATTTATACTGTGTTTTGGATTACTTAATTTTCTTACTTTCAGTCTTGAGGAAGAAACTATTCGAAAACTCTGAACAAAGTGTCCTGGCAAGGTCTGAGATAGGAAAATTTTCGATCACTCTACTTATATTGTGCGGTTTCTGTGCCTTGCTTTTGTGTCTGCTTATACAATCGTGTACTGGTCGATGAATAAGATTACTACCTTGTGGAAGTTGAGTGAAATAATAGTTTCCTATTTTTTAATCTTCTTTGGCGATGAGTTGAGCGTTATAGTTTCATATAGCAAAATCATCCTGTTATACAAAGAAATCTTCTGTTATTTATAATTTTCACTTTTTGGCCTGTGATTTCTTTTTTCTATTAATATTCTTGATTAATTTCATTGATGATGCAGATTAAGCATTGAATTTTATAAAATTTGTAGCAACCATTAAAATGTTAGAATTTAATGAAGCAGGTATGCAGATGCCGATCTCATTATTCTTTTATTAGAATATTATTTTATCAGATAAATATACTTAATCCATGTATGTTCTCTTACTGTAATCGAAAGTGAGTTCTAGTAGTCTAATGTATACAAATTGGCGAACAAAGTATGACCATCTTTGTCTTGAAATGATTTATTTGAAAATGCAGCTTATCATGATACGATTTTTCTGTACCCCATTGTAGCTACTGAAGAAGACTTCAGCTCATCAAATAGCAAAAACTACCACCCCCATTGAATTCTTTCGTCGTGCTTTACAAGGGGTTAATCATCAAGGGTCAGTGCATCTGATTTGCATTTACATAAATTCTAAATTGGAAGTTTCTTTGCTATTTTGTGTGGGATTTGGGTTGAAAGAAATAATAGAATTTGTAGATATTTGGAGCGGTCTTGTGATGAGGACTAGGAGATGGTTAAGTTTAATGGCTCTTTGTGGGTCTTTCTGTAATTATGGTATTGACTTGATATTGTTGGATTGAAGTTCTTTTCTGTAGCTTTTGGGACGTTTTGTTCTGTTGCCCTTGTATATTCTTTCATTTTTCTCAATGGAAGCTTGGTTTCTTACTTTAAAAAAAATTAGCCTAGTTGGTTTATTTTATTCCTTTGTGTGCTTATAAATTGCAAATGTTTCTGAATTCTTTGGTTTCTTTGGTAGGAATTGCAAGCTAAAATGTCCTGGGATTTTTATAAGGAGGAATAGGTTCGTACCTTTAGACGCCATACAAATGAGAAAAACTTTGTTGGTCTGACAGTAAATAACCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTTGTCTACCACAAGGTTATTTATATTCAAAACCGTGGCTCTCCATTCTTTATCTTAGAACATAACACAAGTGTTGCCTCTTGTCTCAGGAAATCTCCAGACAGCTGACTTCGCATAAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGGAAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTGCTGGTTCTTGCGGTTTAATTAGTAATTTAACCATTTTAGATAGAAATTATGTAGGGATGCGTCTTTAGCTCAAATATATGTAAGTAATGCTCACGATAGTGCATGTGGTAGGGAAATACAACACAGATGGGTCTTTTTTAGTTAAGGTTACGTGTACCCATCAAGAAGCTGGGGGGTATTTTATACCTAGCTCTTGGTGATCATATATGATGAGGATTGTTGGGAGGGAGTCCCACGTTGGCTAATTTAGAGGATGATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGCAAAGCCATGAGGGCTTATACTCTAAGTGGACATCCGTGGAAATCCGTGATTCCTAACAATCTATTCCTCTATCCACACCCTATTCATTATAGTCATTATGTCCTTGAACCAATCATGCTCTGGAAGCTTGGATTGTGTTCTTTAAATTGGTTACGTTGAACTACTGAATAGAATGCCTTTGTCTGTCACAAGCCTTGTGATAGCATCTTCACTTGTGTACGAGTCTAACTTTGAAGTGAAAGACAATGGAGTAAATGGGGTGGTTTCTGAAGAGTGAGCTGTGAGGCAGTAAGAGGAAGGGCTGACTAATGCATCATCCAAGTATTTGATTTCAATCTTGTTAACATAAACTTAACTTTGGACGATACTTCACTCTAAAATGTAGGAAATTCTTGATCCTGTTTCTGTTTAGAATCATCTTGATAGTTACTACAACAAATTAGTCTCCAAAAACTTTGTACATTCGGCTTCTGCAGTTTCATGTTGAAATTCTCATCTCATTGTCAACTTTTCCCTCCCATTTCGCTTGTGGAAAAGAAAAATTAGGTATTCAATATTGGGATTCAGCAGGAGCGCCAACACAGATATGTCTCAGCCTGCTTTTGACTAGAGGCAATAAAGTTTGTTGGATGACCCATCCTAGATCTTTTTGGTTAATTTTGGTCTAAAGTTTTGAGGACAATAAATATCGAATATCCCTATAGTACCAAAGACTGGTTTGAAGGCGACCTTTATTATGATTATTTTTTTTTTACCTTCATGCTTAGTTGAGTACTGACTTCTGCTGCTTTACTTGACCTATTCATTTCAATTATCGATCTTGCTTTAACTTCCTTGACCAACTGCCAACTGCCTGCCTTTTTACATAACGATGCTAATCATGCTTTGTCAGCAACTTCTTCCTTTCATGTCATTTCATACCTTAATCCTTTTCAATTTGATCGTCCTCAAAAAATCGCCTCTTGGAGGCGGTTTGCAGCTGAGGAGAACACTTTTTGTATTATGTTCGTAGTATAGAAGAATAGTTCTATACTACTGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGCATTTACTGGCTCGAAGTTTGGATATGAGACTGGCCTAAAGTGTCTCGAATTCAAACCTCTTGGTGAAATGCTTAATATGTTGTGTGCTATACGAATGAGATAGAGATTTAGTTCGGATCAGTTTGTGTTTTGTTTTTGAACTTCGTAGTTGTATAAAAAGTAAGTTTTTATGAATGTAAGCTTATGCTTTCTATTTCTCAACTTCAGGTTATACAAGCTTAACTTATGAATCGAATTTCATTTGTTATCTCGTGAAATCAGCATTGTGGGCTTGGATAACTACATGTGAACATATTATCTGAACAACTCGGACTATTCAATAACCATTATAAGAGGTACGGATCACATCCCTCTACAATTCATCCCCTCCCTATGCTGCCAAAAAGAAAAGAATATAATAATTAATTAATGAGCAATGGAAAGGAATAGAGGAAGAAAACAGAAAAGCTTTCTTTATTGCCTGTGAAGATTGTCAATAAAAATAAAGAATGGGAATAGGTATATGTGCTTGGCACAACCGTAGGGGACGGGGTGCTTGGTAAAACAAGATTCCCCGTAAAGAAATAGAGAAACCGAGAGTTCGTCAAATGGTCAAAATTCAAACCTCTTCCTTCCCTTATTATGAGAGCCCTTAATAAACTTTCAACGACACTCAACCAATATGGAAGCTCATCATATGATTTCGCATCCTAGTGTTGTGTCATCTTTAGTGGCAAACCGTAACTATATTGGGCACAATTTATTTAGTTATTCGTACACATAGGACATGAGTTAGATTAATTATGGTATACGGTTACACTATTTTTCTCAATGCTTTTTGACATTACCCTATATTTCTTTTTATTTATTTAAATTATATTATTTTTATATAATAAAAAAATATCCCATCCGAGTTCAGCTGTAAAAATAGCAGAGAATCAATGGTGGCGTTCATCCAAGATTCA

mRNA sequence

ATGTACCTCTTGAGGAAGAAACTATTCGAAAACTCTGAACAAAGTGTCCTGGCAAGGAATTGCAAGCTAAAATGTCCTGGGATTTTTATAAGGAGGAATAGACGCCATACAAATGAGAAAAACTTTGTTGGTCTGACAGTAAATAACCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTTGTCTACCACAAGGAAATCTCCAGACAGCTGACTTCGCATAAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGGAAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTGCTGGTTCTTGCGTTTCATGTTGAAATTCTCATCTCATTGTCAACTTTTCCCTCCCATTTCGCTTGTGGAAAAGAAAAATTAGGTATTCAATATTGGGATTCAGCAGGAGCGCCAACACAGATATGTCTCAGCCTGCTTTTGACTAGAGGCAATAAAGTTATACAAGCTTAACTTATGAATCGAATTTCATTTGTTATCTCGTGAAATCAGCATTGTGGGCTTGGATAACTACATGTGAACATATTATCTGAACAACTCGGACTATTCAATAACCATTATAAGAGCTGTAAAAATAGCAGAGAATCAATGGTGGCGTTCATCCAAGATTCA

Coding sequence (CDS)

ATGTACCTCTTGAGGAAGAAACTATTCGAAAACTCTGAACAAAGTGTCCTGGCAAGGAATTGCAAGCTAAAATGTCCTGGGATTTTTATAAGGAGGAATAGACGCCATACAAATGAGAAAAACTTTGTTGGTCTGACAGTAAATAACCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTTGTCTACCACAAGGAAATCTCCAGACAGCTGACTTCGCATAAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGGAAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTGCTGGTTCTTGCGTTTCATGTTGAAATTCTCATCTCATTGTCAACTTTTCCCTCCCATTTCGCTTGTGGAAAAGAAAAATTAGGTATTCAATATTGGGATTCAGCAGGAGCGCCAACACAGATATGTCTCAGCCTGCTTTTGACTAGAGGCAATAAAGTTATACAAGCTTAA

Protein sequence

MYLLRKKLFENSEQSVLARNCKLKCPGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLAFHVEILISLSTFPSHFACGKEKLGIQYWDSAGAPTQICLSLLLTRGNKVIQA

Homology

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 30  IRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPDAGDVEDDA 89
           +R  R HTNEKNFVGLTVN++Y+ACGSETNEV+VYHKEI+R +TSH+FGSPD  D E++A
Sbjct: 583 VRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEA 642

Query: 90  GSNFISAVCWKSDSPTILSANSQGTIKVLVLA 122
           GS FISAVCWKSDSPT+L+ANSQGTIKVLVLA
Sbjct: 643 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-34
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 30  IRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPDAGDVEDDA 89
           +R  R H NEKNFVGLTV ++YIACGSETNEVFVYHKEIS+ LT H+FG+ D  D ED+A
Sbjct: 580 VRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEA 639

Query: 90  GSNFISAVCWKSDSPTILSANSQGTIKVLVLA 122
           GS FISAVCWKSD PTIL+ANSQGTIKVLVLA
Sbjct: 640 GSYFISAVCWKSDRPTILTANSQGTIKVLVLA 671

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy Swiss-Prot
Match: Q9T014 (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 36   HTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGS--PDAGDVEDDAGSNF 95
            HTNEKNFVGL+ ++ YIACGSETNEV+ YH+ +   +TS+KFGS  P +G   ++  + F
Sbjct: 949  HTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLF 1008

Query: 96   ISAVCWKSDSPTILSANSQGTIKVLVL 121
            +S+VCW+  S  ++SA+S G+IKVL L
Sbjct: 1009 VSSVCWRKRSNMVVSASSNGSIKVLQL 1035

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy Swiss-Prot
Match: Q94BM7 (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.2e-19
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 36  HTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPD-AGDVEDDAGSNFI 95
           HTN KNFVGL+V++ YIA GSETNEVFVYHK     + S+KF + D   ++E D  S FI
Sbjct: 708 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFI 767

Query: 96  SAVCWKSDSPTILSANSQGTIKVL 119
           S+VCW+  S T+++ANS G IK+L
Sbjct: 768 SSVCWRGQSSTLVAANSTGNIKIL 791

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy Swiss-Prot
Match: Q9SYX2 (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-19
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 26   PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGS--PDAG 85
            PG      + HTN+KNFVGL+V + YIACGSETNEV+ Y+K +   +TS+KFGS  P +G
Sbjct: 932  PGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISG 991

Query: 86   DVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVL 121
            +   D    F+S+VCW+  S  +++ANS G +K+L L
Sbjct: 992  NEYFDDNGQFVSSVCWRKKSNMLVAANSTGNMKLLKL 1028

[Close]

BLAST of Cp4.1LG05g15240 vs. NCBI nr
Match: RYR00147.1 (hypothetical protein Ahy_B07g088230 isoform B [Arachis hypogaea])

HSP 1 Score: 153 bits (386), Expect = 8.26e-45
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 30  IRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPDAGDVEDDA 89
           +R  + H NEKNFVGLTVN++YIACGSETNEVFVYHKEIS+ +T HKFGSP+  D ED+A
Sbjct: 3   VRTFKGHANEKNFVGLTVNSEYIACGSETNEVFVYHKEISKPVTWHKFGSPEVDDAEDEA 62

Query: 90  GSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 63  GSYFISAVCWKSDSPTILTANSQGTIKVLVLA 94

[Close]

BLAST of Cp4.1LG05g15240 vs. NCBI nr
Match: KAE8646927.1 (hypothetical protein Csa_020626 [Cucumis sativus])

HSP 1 Score: 162 bits (411), Expect = 6.41e-44
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVNN+YIACGSETNEVF
Sbjct: 411 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 470

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPD  DVEDD GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 471 VYHKEISRPLTWHRFGSPDVTDVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 529

[Close]

BLAST of Cp4.1LG05g15240 vs. NCBI nr
Match: KAA0054476.1 (E3 ubiquitin-protein ligase COP1 [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 1.80e-43
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVNN+YIACGSETNEVF
Sbjct: 556 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 615

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPD  DVEDD GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 616 VYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. NCBI nr
Match: XP_008456402.1 (PREDICTED: E3 ubiquitin-protein ligase COP1 [Cucumis melo] >TYK14562.1 E3 ubiquitin-protein ligase COP1 [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 1.80e-43
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVNN+YIACGSETNEVF
Sbjct: 556 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 615

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPD  DVEDD GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 616 VYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. NCBI nr
Match: XP_022149595.1 (E3 ubiquitin-protein ligase COP1 [Momordica charantia])

HSP 1 Score: 162 bits (411), Expect = 3.44e-43
Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVN++YI+CGSETNEVF
Sbjct: 556 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNSEYISCGSETNEVF 615

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPDAGDVED+ GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 616 VYHKEISRPLTWHRFGSPDAGDVEDETGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy TrEMBL
Match: A0A444YE17 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B07g088230 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 4.00e-45
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 30  IRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPDAGDVEDDA 89
           +R  + H NEKNFVGLTVN++YIACGSETNEVFVYHKEIS+ +T HKFGSP+  D ED+A
Sbjct: 3   VRTFKGHANEKNFVGLTVNSEYIACGSETNEVFVYHKEISKPVTWHKFGSPEVDDAEDEA 62

Query: 90  GSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 63  GSYFISAVCWKSDSPTILTANSQGTIKVLVLA 94

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy TrEMBL
Match: A0A5D3CT10 (E3 ubiquitin-protein ligase COP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00470 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 8.70e-44
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVNN+YIACGSETNEVF
Sbjct: 556 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 615

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPD  DVEDD GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 616 VYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy TrEMBL
Match: A0A5A7UJL9 (E3 ubiquitin-protein ligase COP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002520 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 8.70e-44
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVNN+YIACGSETNEVF
Sbjct: 556 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 615

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPD  DVEDD GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 616 VYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy TrEMBL
Match: A0A1S3C4F2 (E3 ubiquitin-protein ligase COP1 OS=Cucumis melo OX=3656 GN=LOC103496353 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 8.70e-44
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVNN+YIACGSETNEVF
Sbjct: 556 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 615

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPD  DVEDD GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 616 VYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. ExPASy TrEMBL
Match: A0A0A0KBG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G161200 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.66e-43
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 7   KLFENSEQSVLARNCKLKC----PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVF 66
           K   NSE +  + +  L+       + +R  R HTNEKNFVGLTVNN+YIACGSETNEVF
Sbjct: 556 KFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 615

Query: 67  VYHKEISRQLTSHKFGSPDAGDVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVLA 121
           VYHKEISR LT H+FGSPD  DVEDD GS FISAVCWKSDSPTIL+ANSQGTIKVLVLA
Sbjct: 616 VYHKEISRPLTWHRFGSPDVTDVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. TAIR 10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 8.0e-38
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 30  IRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPDAGDVEDDA 89
           +R  R HTNEKNFVGLTVN++Y+ACGSETNEV+VYHKEI+R +TSH+FGSPD  D E++A
Sbjct: 583 VRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEA 642

Query: 90  GSNFISAVCWKSDSPTILSANSQGTIKVLVLA 122
           GS FISAVCWKSDSPT+L+ANSQGTIKVLVLA
Sbjct: 643 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 674

[Close]

BLAST of Cp4.1LG05g15240 vs. TAIR 10
Match: AT4G11110.1 (SPA1-related 2 )

HSP 1 Score: 97.8 bits (242), Expect = 8.9e-21
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 36   HTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGS--PDAGDVEDDAGSNF 95
            HTNEKNFVGL+ ++ YIACGSETNEV+ YH+ +   +TS+KFGS  P +G   ++  + F
Sbjct: 949  HTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLF 1008

Query: 96   ISAVCWKSDSPTILSANSQGTIKVLVL 121
            +S+VCW+  S  ++SA+S G+IKVL L
Sbjct: 1009 VSSVCWRKRSNMVVSASSNGSIKVLQL 1035

[Close]

BLAST of Cp4.1LG05g15240 vs. TAIR 10
Match: AT1G53090.1 (SPA1-related 4 )

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-20
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 36  HTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPD-AGDVEDDAGSNFI 95
           HTN KNFVGL+V++ YIA GSETNEVFVYHK     + S+KF + D   ++E D  S FI
Sbjct: 708 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFI 767

Query: 96  SAVCWKSDSPTILSANSQGTIKVL 119
           S+VCW+  S T+++ANS G IK+L
Sbjct: 768 SSVCWRGQSSTLVAANSTGNIKIL 791

[Close]

BLAST of Cp4.1LG05g15240 vs. TAIR 10
Match: AT1G53090.2 (SPA1-related 4 )

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-20
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 36  HTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGSPD-AGDVEDDAGSNFI 95
           HTN KNFVGL+V++ YIA GSETNEVFVYHK     + S+KF + D   ++E D  S FI
Sbjct: 708 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFI 767

Query: 96  SAVCWKSDSPTILSANSQGTIKVL 119
           S+VCW+  S T+++ANS G IK+L
Sbjct: 768 SSVCWRGQSSTLVAANSTGNIKIL 791

[Close]

BLAST of Cp4.1LG05g15240 vs. TAIR 10
Match: AT2G46340.1 (SPA (suppressor of phyA-105) protein family )

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-20
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 26   PGIFIRRNRRHTNEKNFVGLTVNNQYIACGSETNEVFVYHKEISRQLTSHKFGS--PDAG 85
            PG      + HTN+KNFVGL+V + YIACGSETNEV+ Y+K +   +TS+KFGS  P +G
Sbjct: 932  PGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISG 991

Query: 86   DVEDDAGSNFISAVCWKSDSPTILSANSQGTIKVLVL 121
            +   D    F+S+VCW+  S  +++ANS G +K+L L
Sbjct: 992  NEYFDDNGQFVSSVCWRKKSNMLVAANSTGNMKLLKL 1028

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g15240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43254	1.1e-36	78.26	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]
P93471	4.0e-34	77.17	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1	[more]
Q9T014	1.3e-19	52.87	Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2	[more]
Q94BM7	6.2e-19	55.95	Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1	[more]
Q9SYX2	8.1e-19	48.45	Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV...	[more]

BLAST of Cp4.1LG05g15240 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR00147.1	8.26e-45	79.35	hypothetical protein Ahy_B07g088230 isoform B [Arachis hypogaea]	[more]
KAE8646927.1	6.41e-44	70.59	hypothetical protein Csa_020626 [Cucumis sativus]	[more]
KAA0054476.1	1.80e-43	70.59	E3 ubiquitin-protein ligase COP1 [Cucumis melo var. makuwa]	[more]
XP_008456402.1	1.80e-43	70.59	PREDICTED: E3 ubiquitin-protein ligase COP1 [Cucumis melo] >TYK14562.1 E3 ubiqui...	[more]
XP_022149595.1	3.44e-43	69.75	E3 ubiquitin-protein ligase COP1 [Momordica charantia]	[more]

BLAST of Cp4.1LG05g15240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444YE17	4.00e-45	79.35	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B07g088230 PE=4 SV=1	[more]
A0A5D3CT10	8.70e-44	70.59	E3 ubiquitin-protein ligase COP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7UJL9	8.70e-44	70.59	E3 ubiquitin-protein ligase COP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C4F2	8.70e-44	70.59	E3 ubiquitin-protein ligase COP1 OS=Cucumis melo OX=3656 GN=LOC103496353 PE=4 SV...	[more]
A0A0A0KBG5	1.66e-43	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G161200 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g15240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32950.1	8.0e-38	78.26	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G11110.1	8.9e-21	52.87	SPA1-related 2	[more]
AT1G53090.1	4.4e-20	55.95	SPA1-related 4	[more]
AT1G53090.2	4.4e-20	55.95	SPA1-related 4	[more]
AT2G46340.1	5.8e-20	48.45	SPA (suppressor of phyA-105) protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 23..122 e-value: 8.1E-33 score: 115.7
IPR042755	E3 ubiquitin-protein ligase COP1	PANTHER	PTHR44080	E3 UBIQUITIN-PROTEIN LIGASE COP1	coord: 29..121
None	No IPR available	PANTHER	PTHR44080:SF2	E3 UBIQUITIN-PROTEIN LIGASE COP1	coord: 29..121
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 36..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g15240.1	Cp4.1LG05g15240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046283	anthocyanin-containing compound metabolic process
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0009647	skotomorphogenesis
biological_process	GO:0009641	shade avoidance
biological_process	GO:0006281	DNA repair
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:0010224	response to UV-B
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0009963	positive regulation of flavonoid biosynthetic process
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0009649	entrainment of circadian clock
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016604	nuclear body
cellular_component	GO:0000152	nuclear ubiquitin ligase complex
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0005515	protein binding