Cp4.1LG05g14950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g14950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	Cp4.1LG05: 10314291 .. 10315082 (-)
RNA-Seq Expression	Cp4.1LG05g14950
Synteny	Cp4.1LG05g14950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTACAAAAATTCCTCTCTCCACAATATATATTTATTTAATTTAGACGCCGTCGCTGCTTCACCGAAATTGCTCTCTTTTCCTCTTCTTCTTCTTCCACGCTTCCTCCATTTTTGCAAGATGAAGAAATCTGGTATCATTGCCGCTTCCATCGCCGCCGCCTCCGCCGCCGTCTCCGCTTCCCCTTCTTCCTCTACTCTGTTCTGCGACCCAAAAATTCAGCTCCCTTGTCAGGTAAGCCTTGATCCACAAATCGTCGATTAAAAGATTCCATCTTGTTGAATTTGACTCGTAAATTTCGGGTCTTTTTCGCGGTTTTTGAGATCTGGAGAGTTTAATTTGCAGGAGGAAAAGGAATTAGGACAGAATTCTTCGTCTTCGGCGGATAAATTTGCCCCCAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACAGATGAGCTCCGCCGGGGGACGACCATGGATGCGACGGCGGGACCCACCTCGGCCGCAACTCTGTTTGTCTATTTTTTTTTTTAAATGTGATTTTTCTTGTGGAAAGAAAGGATAGATGATGGAAAAAGTTGTTAAAAGTCTCTTATTTTGTACATTAAAAAATAGATTAAATAATAATTTTAGTTTTTAGCTTTTTATTATTTTAATAAAATTATTGCCGAAAATTGAGAATTTCGGACGACAAAAAGAAAAAAAAAGTATTTTCCTTAAATTAGGCTAAAGAGAAAAGGTTGTTTTTTTTTTTTTTTTTACAAATTTACAAACAATACAACCTTAAATTGCAATC

mRNA sequence

GAATTACAAAAATTCCTCTCTCCACAATATATATTTATTTAATTTAGACGCCGTCGCTGCTTCACCGAAATTGCTCTCTTTTCCTCTTCTTCTTCTTCCACGCTTCCTCCATTTTTGCAAGATGAAGAAATCTGGTATCATTGCCGCTTCCATCGCCGCCGCCTCCGCCGCCGTCTCCGCTTCCCCTTCTTCCTCTACTCTGTTCTGCGACCCAAAAATTCAGCTCCCTTGTCAGGAGGAAAAGGAATTAGGACAGAATTCTTCGTCTTCGGCGGATAAATTTGCCCCCAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACAGATGAGCTCCGCCGGGGGACGACCATGGATGCGACGGCGGGACCCACCTCGGCCGCAACTCTGTTTGTCTATTTTTTTTTTTAAATGTGATTTTTCTTGTGGAAAGAAAGGATAGATGATGGAAAAAGTTGTTAAAAGTCTCTTATTTTGTACATTAAAAAATAGATTAAATAATAATTTTAGTTTTTAGCTTTTTATTATTTTAATAAAATTATTGCCGAAAATTGAGAATTTCGGACGACAAAAAGAAAAAAAAAGTATTTTCCTTAAATTAGGCTAAAGAGAAAAGGTTGTTTTTTTTTTTTTTTTTACAAATTTACAAACAATACAACCTTAAATTGCAATC

Coding sequence (CDS)

ATGAAGAAATCTGGTATCATTGCCGCTTCCATCGCCGCCGCCTCCGCCGCCGTCTCCGCTTCCCCTTCTTCCTCTACTCTGTTCTGCGACCCAAAAATTCAGCTCCCTTGTCAGGAGGAAAAGGAATTAGGACAGAATTCTTCGTCTTCGGCGGATAAATTTGCCCCCAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACAGATGA

Protein sequence

MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Cp4.1LG05g14950 vs. NCBI nr
Match: XP_023532108.1 (uncharacterized protein LOC111794370 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136 bits (342), Expect = 4.14e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60
          MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG
Sbjct: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Cp4.1LG05g14950 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 129 bits (323), Expect = 3.29e-37
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60
          MKKSG IAASIAAASAAVSASPSSSTLFCDPKIQLP QEEKELG+NSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Cp4.1LG05g14950 vs. NCBI nr
Match: KAG7034915.1 (hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (315), Expect = 5.47e-36
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60
          MKKSG IAAS+ AA+AAVSASPSSSTLFCDPKIQLP QEEKELG+NSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Cp4.1LG05g14950 vs. NCBI nr
Match: KAG6604795.1 (hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (311), Expect = 2.23e-35
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60
          MKKSG IAAS+ AA+AAVSASPSSSTLFCDPKIQ P QEEKELG+NSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Cp4.1LG05g14950 vs. NCBI nr
Match: XP_038902353.1 (uncharacterized protein LOC120088987 [Benincasa hispida])

HSP 1 Score: 104 bits (259), Expect = 1.77e-27
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60
          MKKSG IAAS+AAA  AVSASPSSSTL C+PK+Q P QE KE G+NSSSS DKFAPKFDG
Sbjct: 1  MKKSGFIAASVAAA--AVSASPSSSTLVCNPKVQFPRQEGKE-GENSSSSTDKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 69

[Close]

BLAST of Cp4.1LG05g14950 vs. ExPASy TrEMBL
Match: A0A6J1I1D6 (uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 1.59e-37
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60
          MKKSG IAASIAAASAAVSASPSSSTLFCDPKIQLP QEEKELG+NSSSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Cp4.1LG05g14950 vs. ExPASy TrEMBL
Match: A0A6J1CHM8 (uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011258 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 2.59e-27
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDG 60
          MKKS  IAAS+A ASAAVSASPSSST  C+PK+Q P QE K + +NSSSSADKFAPKFDG
Sbjct: 1  MKKSAFIAASVAGASAAVSASPSSSTFVCNPKVQFPRQEGK-VEENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 71

[Close]

BLAST of Cp4.1LG05g14950 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.53e-17
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEE---KELGQNSS---SSADKF 60
          MKKSG  AAS+AAASA   ++PSSS   C+ KIQL   E    K++  + S   SSAD+F
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADRF 60

Query: 61 APKFDGLRFIETLVTAHR 72
          AP+FDGLRFIETLVTAHR
Sbjct: 61 APRFDGLRFIETLVTAHR 78

[Close]

BLAST of Cp4.1LG05g14950 vs. ExPASy TrEMBL
Match: A0A059DGL2 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01816 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.87e-16
Identity = 48/78 (61.54%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 1   MKKSGIIAASIAAASAAVSASPSSSTLF-CDPKIQLPCQE-----EKELGQNSSSSADKF 60
           MKKSG+ A S AAASA   AS SSS  F C  K+Q P QE     E+     +S SADKF
Sbjct: 51  MKKSGLFAVSAAAASATAIASSSSSLNFSCTSKLQFPNQEHVSSTEQAASSQNSGSADKF 110

Query: 61  APKFDGLRFIETLVTAHR 72
           AP+FDGLRFIETLVTAHR
Sbjct: 111 APRFDGLRFIETLVTAHR 128

[Close]

BLAST of Cp4.1LG05g14950 vs. ExPASy TrEMBL
Match: A0A6J1AJZ1 (uncharacterized protein LOC110418707 OS=Herrania umbratica OX=108875 GN=LOC110418707 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.20e-15
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1  MKKSGIIAASIAAASA---AVSASPSSSTLFCDPKIQLPCQEEKELGQNS---SSSADKF 60
          MKK G+ AAS+AAASA   + S+SPSSS   C+   Q   +E+KE   ++   S S DKF
Sbjct: 1  MKKPGLFAASVAAASATAISASSSPSSSNFACNSNFQFSSEEKKEHEGSAIKKSPSKDKF 60

Query: 61 APKFDGLRFIETLVTAHR 72
          AP+FDGLRFIETL+TAHR
Sbjct: 61 APRFDGLRFIETLITAHR 78

[Close]

BLAST of Cp4.1LG05g14950 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MKKSGIIAASI--AAASAAVSA-SPSSSTLFCDPKIQLPCQEEKE-----LGQNSSSSAD 60
          MKK+GIIAASI  AA++ A+SA S ++S  F  P+  L  QE KE      G +     +
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDE 60

Query: 61 KFAPKFDGLRFIETLVTAHR 73
          KFAP+FDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Cp4.1LG05g14950 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 4  SGIIAASIAAASAAVSASPSSSTLFCDPKIQLPCQEEKELGQNSSSSADKFAPKFDGLRF 63
          SG++A+ IA ++AA+S+S             LP    K      ++ +D F P+FDGLRF
Sbjct: 5  SGVVASVIAVSTAALSSSSI-----------LPPVSPKVWESRKTNGSDNFEPRFDGLRF 62

Query: 64 IETLVTAHR 73
          IETLVTAHR
Sbjct: 65 IETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g14950 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g14950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532108.1	4.14e-40	100.00	uncharacterized protein LOC111794370 [Cucurbita pepo subsp. pepo]	[more]
XP_022970726.1	3.29e-37	95.83	uncharacterized protein LOC111469626 [Cucurbita maxima]	[more]
KAG7034915.1	5.47e-36	91.67	hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6604795.1	2.23e-35	90.28	hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038902353.1	1.77e-27	81.94	uncharacterized protein LOC120088987 [Benincasa hispida]	[more]

BLAST of Cp4.1LG05g14950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1D6	1.59e-37	95.83	uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626...	[more]
A0A6J1CHM8	2.59e-27	79.17	uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
E0CTD2	2.53e-17	60.26	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A059DGL2	1.87e-16	61.54	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01816 PE=4 SV...	[more]
A0A6J1AJZ1	1.20e-15	56.41	uncharacterized protein LOC110418707 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of Cp4.1LG05g14950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	1.6e-11	55.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	3.4e-06	43.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g14950.1	Cp4.1LG05g14950.1	mRNA