Cp4.1LG05g14720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g14720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 10209345 .. 10210284 (+)
RNA-Seq ExpressionCp4.1LG05g14720
SyntenyCp4.1LG05g14720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTATCTAGGTCGGGTATGGATGGCGGCGAGTGTAGCCGTAGTCCACGGCGGCCAATCGGACGGCCGCCACGGATCGGCTGAAGGAATCTTAACTCTGCACCGAAATGCAGAAACAACCGCCGTAGCCGTAGATCTCCGCCAATTTTCAACAGCGACGAGTCACTCGAATCGCGATGGAGACGAGAAGAGGCAAGCCGATGAGTCTCTCCGCCGAGTTATGTACTTCAATTGCTGGGGCCAAGGCTGAGATTTGAGAACAACGGCAAGGACATGAGCGATCGAGAGTTTTTGCCCTTGTTTAGGGCTTTTTTTTTTTTTTCTGATCGGAAACGAGGATCGGCTCTGTGATTGTTGACCTTTTTTTACAGAACGATCTCATCCTTGATTGTAAATTACTGGAATCGGGAAGCGATTGATCGGAAACGAGGATTCGTTGTTGCCTTGCGTGTAATTAAAACTAAATGTATAAACGAAATCAAACTGTTCACGATTTCGGTGATTTTTTTTTTTTTTCAATAATCATCAACCTTGTTTATGATCCATTTCTGTGATCCTTTCTGGTGAGGGAATTCATTGATCCAATCGATCTGGAATTCATAATTAAAATTGCTGAACTCATTCTTGACTGATGAATCGATCAAAAAGTGGTGACCCGAAATTTCCAGTTTCGGGTTTAGACAAATTTGAGATAGAACACTATAATGAGTATCTATTCATATGAAATTTTTGAAGAATTTCGATATTTTGAAGGGAAATTTTTAAATTTTTAATTCATTGAAGTTGTTGAAATCCTTTTAGATTTGATTATTGATAATTTGCACAAGAAATATTTTGAATATCTTTCTTAATTAGGTTAGAATGATGGTCCTGTTCGGGCGCCTGGTTCGGGGCCCCATCTTATCGATGAATCGGAGCGTGATACTCTCCTAATCTAA

mRNA sequence

ATGAGTCGGGTATGGATGGCGGCGAGTGTAGCCGTAGTCCACGGCGGCCAATCGGACGGCCGCCACGGATCGGCTGAAGGAATCTTAACTCTGCACCGAAATGCAGAAACAACCGCCGTAGCCGTAGATCTCCGCCAATTTTCAACAGCGACGAGTCACTCGAATCGCGATGGAGACGAGAAGAGGCAAGCCGATGAGTCTCTCCGCCGAGTTATAACGATCTCATCCTTGATTGTAAATTACTGGAATCGGGAAGCGATTGATCGGAAACGAGGATTCGTTGTTGCCTTGCGTAATGATGGTCCTGTTCGGGCGCCTGGTTCGGGGCCCCATCTTATCGATGAATCGGAGCGTGATACTCTCCTAATCTAA

Coding sequence (CDS)

ATGAGTCGGGTATGGATGGCGGCGAGTGTAGCCGTAGTCCACGGCGGCCAATCGGACGGCCGCCACGGATCGGCTGAAGGAATCTTAACTCTGCACCGAAATGCAGAAACAACCGCCGTAGCCGTAGATCTCCGCCAATTTTCAACAGCGACGAGTCACTCGAATCGCGATGGAGACGAGAAGAGGCAAGCCGATGAGTCTCTCCGCCGAGTTATAACGATCTCATCCTTGATTGTAAATTACTGGAATCGGGAAGCGATTGATCGGAAACGAGGATTCGTTGTTGCCTTGCGTAATGATGGTCCTGTTCGGGCGCCTGGTTCGGGGCCCCATCTTATCGATGAATCGGAGCGTGATACTCTCCTAATCTAA

Protein sequence

MSRVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHSNRDGDEKRQADESLRRVITISSLIVNYWNREAIDRKRGFVVALRNDGPVRAPGSGPHLIDESERDTLLI
Homology
BLAST of Cp4.1LG05g14720 vs. NCBI nr
Match: KAG7034937.1 (hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (341), Expect = 6.29e-39
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0

Query: 1  MSRVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHSNRDGDE 60
          + RVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHSNRDGDE
Sbjct: 4  LGRVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHSNRDGDE 63

Query: 61 KRQADESLRRVI 72
          K QADESLRRV+
Sbjct: 64 KGQADESLRRVM 75

BLAST of Cp4.1LG05g14720 vs. NCBI nr
Match: KAG6604822.1 (Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (341), Expect = 9.60e-36
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0

Query: 1   MSRVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHSNRDGDE 60
           + RVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHSNRDGDE
Sbjct: 282 LGRVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHSNRDGDE 341

Query: 61  KRQADESLRRVI 72
           K QADESLRRV+
Sbjct: 342 KGQADESLRRVM 353

BLAST of Cp4.1LG05g14720 vs. NCBI nr
Match: KAA0047914.1 (wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 1.96e-06
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 3  RVWMAASVAVVHGGQSDGRHGSA-EGILTLHR-----NAETTAVAVDLRQFSTATSHSNR 62
          R+WM ASVAVV  GQSDG H  A +G+++L +     +AETTAV  +LR  S+A +    
Sbjct: 9  RMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAV--NLRPISSAWNQEGE 68

Query: 63 DGDEKRQADESLRRVITIS 75
          D   +   +ESLRRV+ ++
Sbjct: 69 DIKREANGEESLRRVMYLN 85

BLAST of Cp4.1LG05g14720 vs. NCBI nr
Match: KAG6416916.1 (hypothetical protein SASPL_124357 [Salvia splendens])

HSP 1 Score: 49.3 bits (116), Expect = 1.32e-04
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 1  MSRVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHS----NR 60
          M+RVWMAASVAVV+G    G+     G+ +L+   +    A DLR FS A +      + 
Sbjct: 4  MNRVWMAASVAVVNGHSDQGQK-LKSGLTSLNHGKKRFFSAADLRPFSGALNTDMEGPSA 63

Query: 61 DGDEKRQADESLRRVI 72
           G+ K QAD+SLR+V+
Sbjct: 64 AGERKGQADDSLRQVM 78

BLAST of Cp4.1LG05g14720 vs. ExPASy TrEMBL
Match: A0A5A7TY19 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001960 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.49e-07
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 3  RVWMAASVAVVHGGQSDGRHGSA-EGILTLHR-----NAETTAVAVDLRQFSTATSHSNR 62
          R+WM ASVAVV  GQSDG H  A +G+++L +     +AETTAV  +LR  S+A +    
Sbjct: 9  RMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAV--NLRPISSAWNQEGE 68

Query: 63 DGDEKRQADESLRRVITIS 75
          D   +   +ESLRRV+ ++
Sbjct: 69 DIKREANGEESLRRVMYLN 85

BLAST of Cp4.1LG05g14720 vs. ExPASy TrEMBL
Match: A0A4D8Y3H7 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_001221 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.40e-05
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 1  MSRVWMAASVAVVHGGQSDGRHGSAEGILTLHRNAETTAVAVDLRQFSTATSHS----NR 60
          M+RVWMAASVAVV+G    G+     G+ +L+   +    A DLR FS A +      + 
Sbjct: 4  MNRVWMAASVAVVNGHSDQGQK-LKSGLTSLNHGKKRFFSAADLRPFSGALNTDMEGPSA 63

Query: 61 DGDEKRQADESLRRVI 72
           G+ K QAD+SLR+V+
Sbjct: 64 AGERKGQADDSLRQVM 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7034937.16.29e-3994.44hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6604822.19.60e-3694.44Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAA0047914.11.96e-0644.30wound-responsive family protein [Cucumis melo var. makuwa][more]
KAG6416916.11.32e-0442.11hypothetical protein SASPL_124357 [Salvia splendens][more]
Match NameE-valueIdentityDescription
A0A5A7TY199.49e-0744.30Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A4D8Y3H76.40e-0542.11Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_001221 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g14720.1Cp4.1LG05g14720.1mRNA