Cp4.1LG05g13300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g13300
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase ATL41-like
Location	Cp4.1LG05: 9353506 .. 9355586 (-)
RNA-Seq Expression	Cp4.1LG05g13300
Synteny	Cp4.1LG05g13300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGGAGAGTTGGCAAGCCATGTATTTCAATGTGGATAAGAATAAGGTTAGGGAAATGGTTACTACGATTCCTCGGCTTAAGGGTTCGATGCAAGACCGTCGTGGAGCAAGAGGAACGGTCGAGAAGTGTGGTCGGGTAGCTGGTGCTGCTGCTCGTGTTATCATCTCTGCCATTCTTGGTGACCCTACTGCTATCGTAGCGGCTGTGGTTGGTGGCATCATATCGAAGTAAGATGTCTTTGAATGCATGCACGTGCAAACATGTTCTTTTTTTTTATTTTTCGGGATGTGTGTTACTTTTATATACATAATTTCGTGTACATTGATTTCATGCATATGAATCCACTAGACGAGCGTTGCTTTTGTACTCTCTAAGTCTGACTTTCGGGTATGCATCATTTTCATGCGTAAGCGTTATCACTTTCATACATACATCACGTAGAAACAAGGTAAAAAACATGACTAGAAGATCACCGATGCGTACAAACATCACGGAGGAAGAGAGGTAGACTAAGAGGGAGGTATACGAGGCTCGTTTGCATGAAGAAGAATGCTTTGACGGTGTATTTTAGGGTTTTCGTTCTTTTTTCAAAAATATCTTTGAACTTTTTTACGTGATTCTGTTAAAAAAATTTAAAAAAACTAAAAAAAAAAAAAGTTCGAATTTTTTAAAATAACATTAATATCCTTAACATTATATATATATTTTTTTAATTAAAGAATGAAATAAGAAAATTAAAAGGATATTCAAGAAATCTAAATTTCTTGTCCCGAACGAGTGTTCGAAGGACCCGAGAACCTGATCAACCTGGATTACCCAACCAAAACCATAAAGATTGGGTTGAATTAGATTTCGAAAAACCGAAAATTCGAGTCGGTTTGTAGGTTAACATGTTTCTAGTCAGGCTAACTCGACCAGTACTCTTGAATATAAAATTACAACATTTAACTATGTTAGTCTTGAGTTGTAACTCGTGAATATTTGATATTTGAGTTTTATGAGATTTTAGTTAGTATCGTTGTATTATGGATAAATAAATTTTTTCTAAAAAGAAATAACCCAACCTCTATTTTCCGGCTGTGAACTCTATTGGGGTTAGGTTAACTCGACAACCCAGCCCGAAAATAGAGGTTAGGTTGGATTGGGTTGTGAGCTCTGCTCGAGTCTAGTTGATAAATAGAAAGAAACTCATAATTATTAAATCAAAATTAACAAAGTTTTGACATTGTTATTCCAATAATTTCTCCATAGTGTCGACATGCGAAAAGCTACTTTAAAGCTTTTCAAATAATTGAGTTTAAGCTATGGAAACAATAAATATGCCAAAAACCAGCAATCGCCGCCGGCCGCCCGGCCCTTCTTCTCCGCCGGAATCATCGCTCAATCAGGAGAGCAGTTGAAAAGTTCCAAAGTCGCAGAGCACACACTGATCGATATAATACTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCGCTCTAGAAATTCCAGAAGTGAATCGATATGCCCCACGCTTTCCCCAAAACTCAGATTTCTCGGACTTCAATGGCGAAATCGACGATGTAATCCTCCTCTTTACTCCTTCAATAGTCCTATTTTAACACCGATTTCCTTCAATCCTTCAATCGCAACATCGTCATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGTGTTTTCCGCCTCGCGTTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCGCACGTTTTTCATTTCGGTTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

mRNA sequence

ATGTTGGTTAGGGAAATGGTTACTACGATTCCTCGGCTTAAGGGTTCGATGCAAGACCGTCGTGGAGCAAGAGGAACGGTCGAGAAGTGTGGTCGGGTAGCTGGTGCTGCTGCTCGTGTTATCATCTCTGCCATTCTTGGTGACCCTACTGCTATCGTAGCGGCTGTGCAATCGCCGCCGGCCGCCCGGCCCTTCTTCTCCGCCGGAATCATCGCTCAATCAGGAGAGCAGTTGAAAAGTTCCAAAGTCGCAGAGCACACACTGATCGATATAATACTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCGCTCTAGAAATTCCAGAAGTGAATCGATATGCCCCACGCTTTCCCCAAAACTCAGATTTCTCGGACTTCAATGGCGAAATCGACGATTCCTATTTTAACACCGATTTCCTTCAATCCTTCAATCGCAACATCGTCATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGTGTTTTCCGCCTCGCGTTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCGCACGTTTTTCATTTCGGTTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Coding sequence (CDS)

ATGTTGGTTAGGGAAATGGTTACTACGATTCCTCGGCTTAAGGGTTCGATGCAAGACCGTCGTGGAGCAAGAGGAACGGTCGAGAAGTGTGGTCGGGTAGCTGGTGCTGCTGCTCGTGTTATCATCTCTGCCATTCTTGGTGACCCTACTGCTATCGTAGCGGCTGTGCAATCGCCGCCGGCCGCCCGGCCCTTCTTCTCCGCCGGAATCATCGCTCAATCAGGAGAGCAGTTGAAAAGTTCCAAAGTCGCAGAGCACACACTGATCGATATAATACTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCGCTCTAGAAATTCCAGAAGTGAATCGATATGCCCCACGCTTTCCCCAAAACTCAGATTTCTCGGACTTCAATGGCGAAATCGACGATTCCTATTTTAACACCGATTTCCTTCAATCCTTCAATCGCAACATCGTCATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGTGTTTTCCGCCTCGCGTTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCGCACGTTTTTCATTTCGGTTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Protein sequence

MLVREMVTTIPRLKGSMQDRRGARGTVEKCGRVAGAAARVIISAILGDPTAIVAAVQSPPAARPFFSAGIIAQSGEQLKSSKVAEHTLIDIILLLLLLLLLLLQIALEIPEVNRYAPRFPQNSDFSDFNGEIDDSYFNTDFLQSFNRNIVMLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

Homology

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-11
Identity = 35/70 (50.00%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 211 DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFF-- 270
           D   EEEI C ICL+EF   D+V  LP C+H+FH  CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 271 ----NIRNRH 274
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy Swiss-Prot
Match: Q9FKX5 (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-09
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 191 SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKW 250
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 150 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 251 LERNRFTCPLCR 263
           L R+  +CPLCR
Sbjct: 210 LRRHA-SCPLCR 218

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-09
Identity = 36/96 (37.50%), Postives = 47/96 (48.96%), Query Frame = 0


Query: 172 LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI-CSICLMEFARGD 231
           L  A I  + VF    +  S G  GG             +  A+E   C++CL EF+  D
Sbjct: 108 LDQAFIDALPVFHYKEIVGSAGGGGG-------------NGAAQEPFDCAVCLCEFSEKD 167

Query: 232 SVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFF 267
            + +LP CSH FH  CI+ WL+ N  TCPLCR   F
Sbjct: 168 KLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCRGTLF 189

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-09
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 165 VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSI 224
           V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+
Sbjct: 89  VYSPELRSRGLDESVIRAIPIFK--FKKRYDQNDGVFTGEGEEEEEKRSQE------CSV 148

Query: 225 CLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCR 263
           CL EF   + + ++P+CSH+FH  CI+ WL+ N   CPLCR
Sbjct: 149 CLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCR 180

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-08
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 219 CSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFF 267
           C++CL EF+  D + +LP+CSH FH  CI+ WL  N  TCPLCR   F
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCRGTLF 190

[Close]

BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: KAG6604984.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035019.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (772), Expect = 6.49e-101
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 151 MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRS 210
           MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRS
Sbjct: 1   MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRS 60

Query: 211 DDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIR 270
           DDRAEEEICSICLMEFARGDSVCVLPDCSHVFHF CIEKWLERNRFTCPLCRCFFFFNIR
Sbjct: 61  DDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIR 120

Query: 271 NRHERKLQFVVPDNPSCLYYFLQ 293
           NRHERKLQFVVPDNPSCLYYFLQ
Sbjct: 121 NRHERKLQFVVPDNPSCLYYFLQ 143

[Close]

BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: XP_023533802.1 (uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298 bits (764), Expect = 1.63e-98
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 154 FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 213
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 83  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 142

Query: 214 AEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH 273
           AEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 143 AEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH 202

Query: 274 ERKLQFVVPDNPSCLYYFLQ 293
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 203 ERKLQFVVPDNPSCLYYFLQ 222

[Close]

BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata])

HSP 1 Score: 296 bits (757), Expect = 2.39e-97
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 154 FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 213
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 90  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 149

Query: 214 AEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH 273
           AEEEICSICLMEFARGDSVCVLPDCSHVFHF CIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 150 AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 209

Query: 274 ERKLQFVVPDNPSCLYYFLQ 293
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 210 ERKLQFVVPDNPSCLYYFLQ 229

[Close]

BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: XP_022971128.1 (RING-H2 finger protein ATL18 [Cucurbita maxima])

HSP 1 Score: 275 bits (703), Expect = 1.81e-90
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 160 FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEIC 219
           FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQR  DRAEEEIC
Sbjct: 7   FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRRYDRAEEEIC 66

Query: 220 SICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQF 279
           SICLMEFARGDSVCVL DCSHVFHF CIEKWLERNRFTCPLCRCFFFFNI NRHERKLQF
Sbjct: 67  SICLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCRCFFFFNIGNRHERKLQF 126

Query: 280 VVPDNPSCLYYFLQ 293
           VVPDNPSCLYYFLQ
Sbjct: 127 VVPDNPSCLYYFLQ 140

[Close]

BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229 bits (583), Expect = 3.99e-72
Identity = 110/139 (79.14%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 156 LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAE 215
           LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR E
Sbjct: 13  LAIIFFNTFVWIPLFRVKEAILGVASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTE 72

Query: 216 EE-ICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHE 275
           EE +CSICL EFAR DSVC LPDC+HVFHF CIEKW ERNRFTCPLCRC  FFNI   HE
Sbjct: 73  EEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHE 132

Query: 276 RKLQFVVPDNPSCLYYFLQ 293
           RKL+FVVPDNPS LYYFLQ
Sbjct: 133 RKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1)

HSP 1 Score: 296 bits (757), Expect = 1.16e-97
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 154 FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 213
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 90  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 149

Query: 214 AEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH 273
           AEEEICSICLMEFARGDSVCVLPDCSHVFHF CIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 150 AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 209

Query: 274 ERKLQFVVPDNPSCLYYFLQ 293
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 210 ERKLQFVVPDNPSCLYYFLQ 229

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy TrEMBL
Match: A0A6J1I5X8 (RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV=1)

HSP 1 Score: 275 bits (703), Expect = 8.75e-91
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 160 FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEIC 219
           FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQR  DRAEEEIC
Sbjct: 7   FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRRYDRAEEEIC 66

Query: 220 SICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQF 279
           SICLMEFARGDSVCVL DCSHVFHF CIEKWLERNRFTCPLCRCFFFFNI NRHERKLQF
Sbjct: 67  SICLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCRCFFFFNIGNRHERKLQF 126

Query: 280 VVPDNPSCLYYFLQ 293
           VVPDNPSCLYYFLQ
Sbjct: 127 VVPDNPSCLYYFLQ 140

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 5.50e-72
Identity = 109/139 (78.42%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 156 LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAE 215
           LAI FFNT+VWIPL R+K+AI+G  SVFRL  +PE D S GGTLLVRRYEELQRSDDRAE
Sbjct: 13  LAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSSRGGTLLVRRYEELQRSDDRAE 72

Query: 216 EE-ICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHE 275
           EE +CSICL EFAR DSVC LPDC+HVFHF CIEKW ERNRFTCPLCRC  FFNI   HE
Sbjct: 73  EEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHE 132

Query: 276 RKLQFVVPDNPSCLYYFLQ 293
           +KL+FVVPDNPS LYYFLQ
Sbjct: 133 KKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy TrEMBL
Match: A0A0A0KFW5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 8.38e-47
Identity = 80/138 (57.97%), Postives = 97/138 (70.29%), Query Frame = 0


Query: 158 ISFFNTYVWIPLLRLKDAIIGGVS-VFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEE 217
           I FFNT++WIPL R+  AI+G V+ VF L   P S       L+VR Y+E    D  + E
Sbjct: 5   ILFFNTFLWIPLFRINQAILGVVATVFGL---PSSPEHGTDLLVVRSYDE----DGGSSE 64

Query: 218 EICSICLMEFAR-GDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHER 277
           EICSICL EF R GDSVC LP+C H+FHF CI++W++RNRFTCPLCRCFFFF    + + 
Sbjct: 65  EICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDT 124

Query: 278 KLQFVVPDNPSCLYYFLQ 293
           K  F+VPDNPS LYYFLQ
Sbjct: 125 KWSFLVPDNPSSLYYFLQ 135

[Close]

BLAST of Cp4.1LG05g13300 vs. ExPASy TrEMBL
Match: A0A6J1CHK3 (RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 1.71e-44
Identity = 84/140 (60.00%), Postives = 96/140 (68.57%), Query Frame = 0


Query: 156 LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDD-RA 215
           L + F    V IPL  LK AI+   +VFR +  P            RRYEEL+R +D  A
Sbjct: 3   LPLIFVYDLVCIPLFHLKQAILSLATVFRFSSPPG-----------RRYEELRRRNDGTA 62

Query: 216 EEEI-CSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH 275
           E+E+ CSICL EFAR DSV  LPDC+HVFH  CIEKW+ERN FTCPLCRC  FFNI NR 
Sbjct: 63  EDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCRC--FFNIENRP 122

Query: 276 ERKLQFVVPDNPSCLYYFLQ 293
           E KL+FV+PDNPSCLYYFLQ
Sbjct: 123 E-KLRFVIPDNPSCLYYFLQ 128

[Close]

BLAST of Cp4.1LG05g13300 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-12
Identity = 35/70 (50.00%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 211 DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFF-- 270
           D   EEEI C ICL+EF   D+V  LP C+H+FH  CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 271 ----NIRNRH 274
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]

BLAST of Cp4.1LG05g13300 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-11
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 187 FVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGC 246
           F P +   +G  L V R+ EL R    +  + C++CL EF   D +  L +C H+FH  C
Sbjct: 73  FFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRRLTNCQHIFHRSC 132

Query: 247 IEKW-LERNRFTCPLCRCFF 266
           +++W +  N+ TCPLCR  F
Sbjct: 133 LDRWMMGYNQMTCPLCRTPF 152

[Close]

BLAST of Cp4.1LG05g13300 vs. TAIR 10
Match: AT5G66070.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 191 SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKW 250
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 150 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 251 LERNRFTCPLCR 263
           L R+  +CPLCR
Sbjct: 210 LRRHA-SCPLCR 218

[Close]

BLAST of Cp4.1LG05g13300 vs. TAIR 10
Match: AT5G66070.2 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 191 SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKW 250
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 174 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 233

Query: 251 LERNRFTCPLCR 263
           L R+  +CPLCR
Sbjct: 234 LRRHA-SCPLCR 242

[Close]

BLAST of Cp4.1LG05g13300 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-10
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 189 PESDGSSGGTLL-VRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCI 248
           P+S     G +L V R+ ++    +R E E C++CL +F   D +  L +C H+FH GC+
Sbjct: 62  PDSAAILAGEMLPVVRFSDI----NRPESECCAVCLYDFENDDEIRRLTNCRHIFHRGCL 121

Query: 249 EKW-LERNRFTCPLCRCFF 266
           ++W +  N+ TCPLCR  F
Sbjct: 122 DRWMMGYNQMTCPLCRTQF 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g13300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	1.6e-11	50.00	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9FKX5	2.0e-09	43.06	NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV...	[more]
Q9FL07	2.6e-09	37.50	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q9LSW9	3.4e-09	35.64	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q8GW38	1.7e-08	52.08	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]

BLAST of Cp4.1LG05g13300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604984.1	6.49e-101	99.30	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023533802.1	1.63e-98	100.00	uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022947864.1	2.39e-97	99.29	E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]	[more]
XP_022971128.1	1.81e-90	96.27	RING-H2 finger protein ATL18 [Cucurbita maxima]	[more]
XP_023512248.1	3.99e-72	79.14	RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG05g13300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G855	1.16e-97	99.29	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1I5X8	8.75e-91	96.27	RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV...	[more]
A0A6J1FTE6	5.50e-72	78.42	RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ...	[more]
A0A0A0KFW5	8.38e-47	57.97	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 P...	[more]
A0A6J1CHK3	1.71e-44	60.00	RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4...	[more]

BLAST of Cp4.1LG05g13300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	1.2e-12	50.00	RING/U-box superfamily protein	[more]
AT5G41400.1	8.3e-11	37.50	RING/U-box superfamily protein	[more]
AT5G66070.1	1.4e-10	43.06	RING/U-box superfamily protein	[more]
AT5G66070.2	1.4e-10	43.06	RING/U-box superfamily protein	[more]
AT1G63840.1	1.9e-10	37.97	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 219..261 e-value: 1.7E-7 score: 40.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 218..262 e-value: 1.6E-13 score: 50.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 219..262 score: 12.858103
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 199..265 e-value: 1.8E-18 score: 67.5
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 157..267
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 157..267
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 219..262 e-value: 1.25428E-17 score: 72.7197
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 208..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g13300.1	Cp4.1LG05g13300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane