Cp4.1LG05g13040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g13040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S12
Location	Cp4.1LG05: 9116219 .. 9118491 (-)
RNA-Seq Expression	Cp4.1LG05g13040
Synteny	Cp4.1LG05g13040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTTCAAAACCGGATATTGTGGTTCGATTCTTGATTTGGATAAACCGAACACCGGCCGTATAGGGCTAGGTCACCAACCAGTTGGGCTTTTCCATTCCTCTTCTTCTTCATAAAAACCCCTCACTTCTTCTTGACCTAATTTGCTGCGCCGTTGATTCTTCACTTCGATCGGTATCTACGCTGTTCTCAAGTCGTCCCCTAACCCTATCCTTCATCGCTTCTTCTTCTTCGATTGTGCCTCTGTTTAAATTGTCTGATTGTTTTTTTGCGTTTGTTTTGCGACAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCGTGAGTGAAAATTTGTTTACAAGCTTCCATTGGTTGTTTTTTCTTTTATAATTTAAGTTGTTGAATGTCTGCTCCTTTTTTCGTTTTTTTTTTTTTGCTTCCTTTGAAATATATTAGTTATCAACGATTCCTTGTTTTTGTGACGTAGAATCTGAAGCTTGTGATAAACGGTTCGAGTGGTGACTAATCTAGGTTGTGAATAAGAAAAAGTTGTAAGTTGAAACTTGATTGGCGAAGGTGACGGAACGATAAATGTTGATGCCTTAGAGATGAAAATTATATGTTTTGGCTTGAATCATATGAGATATGGAACTTTAAATGAAAATGTGATTTGTATGGTGATTTGTTACATTACTTTGTTGGACATTGAAAGATCACGACTGAAGAGCCAAGATCTTTATGCTTGTTTAGGAGTGAAATACTATTGAGGTTTCTTTTGTTATTGGCTTAGTATTTGCTGCAAATGGCGATATATTGCTTTCAATTGCTTGACAAATCCCTTTTAACTCGATTTCTTATGCAGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTAAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTGTCTAATCTTATTTAGCCATTGAAATAAAAATGGCTTTACTTTTGATCATCTGTCATCACTTGTATTGTATTTATCCTACTATGATTGAATATACACCTCTCAATACTAGGCTGCATGTTTTTACCCGTTAATACTTAGCTGCTTTACATGCTCAGGATCGTATTTACATAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACTCGTTATTACTTAGCTGCTTTACATGTTCGGCATCGTATTTACATAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTCCCCGGTATTACTTAGCTGCTTTACATGTTCTGGGTCATATTTACATAACCTCTTCATGCATAATCAAGAAAAAGCTTTCTTTTTTCACATGCCCTGTCAACATCACGATTGGGGAATCTCGTTTTTGCTTGTAAATTGGGCTTCTACACCATCAATTTGAGTTTGATTTCAAGTTGTAATTGATGTGCAGATACCAATACTACCATCATAAGATTTCCCTCATCTGAGTTCAGCATAATGAGTTATTGTTTGATCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGTACGCTGTATGATGCCCATCACTTCTGGAGAAAATGTTCCGTTCTCTGAACCATTTTTGTTTACTTAAAATTTGAATTCCTATCTCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATCATCTCAAATGTTGTTTGTTGGTGTGTCACTAAGAAAGTTTTTGATCTTTAGTTATGTTTAGGTTGGTTGGTTCCCTGTTGCTGTTGAACACGTTTCTTCTACCCTATAATGCTTTTCTTTGTTTTTATTGATTGGAAAGATTTTGGGCAAACAGAACACAAGTTATTTATCATGAGTCTCCTTGCCAAGGGTGAAAGGGAATTGAATTTTATCATCTGTTTATGTTGAGTTACTAAGCTATACCTATTCTCGTTTCTGAAGATTAATGCAACAGTGTGTAGTATAGTTTCTTTTCCTATAAAACTCAATATGTTATCGTTCATATTAGTTGATGCAGTTGAGGTTCATTCGTAT

mRNA sequence

GGTTTTCAAAACCGGATATTGTGGTTCGATTCTTGATTTGGATAAACCGAACACCGGCCGTATAGGGCTAGGTCACCAACCAGTTGGGCTTTTCCATTCCTCTTCTTCTTCATAAAAACCCCTCACTTCTTCTTGACCTAATTTGCTGCGCCGTTGATTCTTCACTTCGATCGGTATCTACGCTGTTCTCAAGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCATCACGACTGAAGAGCCAAGATCTTTATGCTTGTTTAGGAGTGAAATACTATTGAGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTAAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATCATCTCAAATGTTGTTTGTTGGTGTGTCACTAAGAAAGTTTTTGATCTTTAGTTATGTTTAGGTTGGTTGGTTCCCTGTTGCTGTTGAACACGTTTCTTCTACCCTATAATGCTTTTCTTTGTTTTTATTGATTGGAAAGATTTTGGGCAAACAGAACACAAGTTATTTATCATGAGTCTCCTTGCCAAGGGTGAAAGGGAATTGAATTTTATCATCTGTTTATGTTGAGTTACTAAGCTATACCTATTCTCGTTTCTGAAGATTAATGCAACAGTGTGTAGTATAGTTTCTTTTCCTATAAAACTCAATATGTTATCGTTCATATTAGTTGATGCAGTTGAGGTTCATTCGTAT

Coding sequence (CDS)

ATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTAAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGA

Protein sequence

MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS

Homology

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-50
Identity = 94/119 (78.99%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDYVKLVKALCAE
Sbjct: 24  MDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAE 83

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           H+V+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E L+IVQ++V S
Sbjct: 84  HNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 8.1e-50
Identity = 92/120 (76.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 85  HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.6e-48
Identity = 92/119 (77.31%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 85  HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAE
Sbjct: 12  MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH 117
           H +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  +++++
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy Swiss-Prot
Match: P84175 (40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAE
Sbjct: 12  MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH 117
           H +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  +++++
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127

[Close]

BLAST of Cp4.1LG05g13040 vs. NCBI nr
Match: XP_022947564.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022947565.1 40S ribosomal protein S12-like [Cucurbita moschata] >XP_023533236.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023533237.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >KAG6605029.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245 bits (626), Expect = 1.21e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. NCBI nr
Match: KAG7010877.1 (40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (621), Expect = 3.61e-81
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120

[Close]

BLAST of Cp4.1LG05g13040 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243 bits (621), Expect = 7.03e-81
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. NCBI nr
Match: XP_023007085.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 243 bits (621), Expect = 7.03e-81
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           M+IETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MNIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 243 bits (621), Expect = 7.03e-81
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy TrEMBL
Match: A0A6J1G761 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=1)

HSP 1 Score: 245 bits (626), Expect = 5.88e-82
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy TrEMBL
Match: A0A6J1L207 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 3.40e-81
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           M+IETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MNIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy TrEMBL
Match: A0A6J1JGV5 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 3.40e-81
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy TrEMBL
Match: A0A6J1FU69 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 3.40e-81
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cp4.1LG05g13040 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 242 bits (618), Expect = 9.76e-81
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS+
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cp4.1LG05g13040 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-51
Identity = 92/120 (76.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 85  HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cp4.1LG05g13040 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-51
Identity = 92/120 (76.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 85  HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cp4.1LG05g13040 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-51
Identity = 92/120 (76.67%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 85  HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cp4.1LG05g13040 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-49
Identity = 92/119 (77.31%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 85  HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Cp4.1LG05g13040 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-49
Identity = 92/119 (77.31%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 85  HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g13040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	1.2e-50	78.99	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	8.1e-50	76.67	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	2.6e-48	77.31	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	1.0e-36	59.48	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P84175	1.0e-36	59.48	40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2	[more]

BLAST of Cp4.1LG05g13040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947564.1	1.21e-81	100.00	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022947565.1 40S ribosoma...	[more]
KAG7010877.1	3.61e-81	99.17	40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023512603.1	7.03e-81	99.17	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007085.1	7.03e-81	99.17	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_022986724.1	7.03e-81	99.17	40S ribosomal protein S12-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g13040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G761	5.88e-82	100.00	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=...	[more]
A0A6J1L207	3.40e-81	99.17	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111499681 PE=3 SV=1	[more]
A0A6J1JGV5	3.40e-81	99.17	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1	[more]
A0A6J1FU69	3.40e-81	99.17	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=...	[more]
A0A6J1GQC3	9.76e-81	98.33	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=...	[more]

BLAST of Cp4.1LG05g13040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	5.7e-51	76.67	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	5.7e-51	76.67	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	5.7e-51	76.67	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	1.8e-49	77.31	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	1.8e-49	77.31	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 10..23 score: 54.55 coord: 90..103 score: 81.17 coord: 65..86 score: 57.85 coord: 24..40 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 1..119
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 6..24
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 6..99 e-value: 1.0E-27 score: 95.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..120 e-value: 7.8E-53 score: 179.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 2..118
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g13040.1	Cp4.1LG05g13040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome