Cp4.1LG05g12690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g12690
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	organ-specific protein P4-like
Location	Cp4.1LG05: 8758840 .. 8760205 (+)
RNA-Seq Expression	Cp4.1LG05g12690
Synteny	Cp4.1LG05g12690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAAAGACATTGAATTCAACATCTGTGTCCTGTTGCGACTGACAGATCACATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTCTCTTCTTCTGGTAAATTTTTCATATTCATAACTCTTCGATATCACGTTTTTCAAATCGTTCGTAGTTTTTTAGACACGATAAAAGTGATTTTTGGACATTTTATTCTCAAACGTCTTTTTTTGAGCTACGAGAGGTAAAACGTATCGATAATGTTATTACATTGAACGGTACGTTAATCCTTTGAATCTGGTACCAACGAGTATCATTTCTTTTAGAACAACGTTGTCTTTCAAATTTTTCAACTACAAGAGCTGCTTTTGCTAAAACTCGAGTTGTTTCTTGAAAATTTATTTTGGGTATGAAAAAACCGAGTGTTTTAGAGATGGTTTTGTTATTCCTAATAATATGGCTCGGTTATAGATCGCTTCTTCTAAAGTACGCCCTCTTTGTTTCACTTGCAACAATTAGTTTTCCGGGTAAAAAAAAAACATTAAACATGCCATTTTATGAAACTAACACTTTTGACGTTAGTTGACGTACAAGAATTTATATACGTCGGTTATGAATCTCCACCCATCGAGAAAACTTTTTATCTTATTAACCAAAGAAATAAGACTTTGCAATAAATTTTTAAGAAATCCCGAGGCACCCATCCCAAGGTACGATTCCCAAAATCCCTAGAATATATATATTTATTTAATTTCATAATTATTTTTAATTATTTATTCTTCGGGTACTCTTAAAAATAATTTTTATTTTTAAGTTAACCTTTTAGTTAAATATTTGAAAATAAATAAATAGATGTTCGATGAGATTTTAGTTTTATTAAAAACAAAATTTTAAATAAATAACTCGGAACAATCCGAACTAAACAATTAGTTCTATTTAATAAACGTTACTTGGGTTGAAAAAGTTTACCACTTAAACAATTAGGTTGAGTCTAAATAACGTCACAACCTGACCCAACTCGACCCGACTAAATCCAGCTTGAACAATTGAGTTGAATCTAAAAAGACATTCCAACCCGACCAAATTCCATCCACGAACGCTCGTATCAAGTTGATGCATTTTTTTTGGGTACTGATTTTGGGCATCACAGCTAGCAAGTGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATTCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

mRNA sequence

GTTAAAGACATTGAATTCAACATCTGTGTCCTGTTGCGACTGACAGATCACATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTCTCTTCTTCTGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATTCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

Coding sequence (CDS)

GTTAAAGACATTGAATTCAACATCTGTGTCCTGTTGCGACTGACAGATCACATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTCTCTTCTTCTGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATTCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

Protein sequence

VKDIEFNICVLLRLTDHMKLSAAFFLLSLLLEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSEHFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP

Homology

[Close]

BLAST of Cp4.1LG05g12690 vs. NCBI nr
Match: XP_023534667.1 (organ-specific protein P4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162 bits (411), Expect = 8.13e-50
Identity = 85/94 (90.43%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 18  MKLSAAFFLLSLLL---------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 77
           MKLSAAFFLLSLLL         EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1   MKLSAAFFLLSLLLLASVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 78  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 102
           HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP
Sbjct: 61  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of Cp4.1LG05g12690 vs. NCBI nr
Match: XP_022947675.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 159 bits (403), Expect = 1.35e-48
Identity = 83/94 (88.30%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 18  MKLSAAFFLLSLLL---------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 77
           MKLSAAFFLL L+L         EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1   MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 78  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 102
           HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP
Sbjct: 61  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of Cp4.1LG05g12690 vs. NCBI nr
Match: KAG6605086.1 (hypothetical protein SDJN03_02403, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (403), Expect = 1.35e-48
Identity = 84/94 (89.36%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 18  MKLSAAFFLLSLLL---------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 77
           MKLSAAFFLLSLLL         EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1   MKLSAAFFLLSLLLLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 78  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 102
           HFMNNFDTHPNAIIYHSHGAT DHPGHKTKPSAP
Sbjct: 61  HFMNNFDTHPNAIIYHSHGATRDHPGHKTKPSAP 94

[Close]

BLAST of Cp4.1LG05g12690 vs. NCBI nr
Match: XP_023006974.1 (organ-specific protein P4-like [Cucurbita maxima])

HSP 1 Score: 154 bits (390), Expect = 1.30e-46
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 18  MKLSAAFFLLSLLL---------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 77
           MKLSAAFFLLSLLL         EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1   MKLSAAFFLLSLLLLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 78  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 102
            FMNNFDTHPNAIIYHSHGATHDHPGHKTK +AP
Sbjct: 61  RFMNNFDTHPNAIIYHSHGATHDHPGHKTKLTAP 94

[Close]

BLAST of Cp4.1LG05g12690 vs. NCBI nr
Match: KAG7035093.1 (hypothetical protein SDJN02_01888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144 bits (362), Expect = 2.13e-42
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 32  EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSEHFMNNFDTHPNAIIYHSHGATHD 91
           EKGEYWKKVMKDEAIPEMLKELLFDDDSL SSDAQSEHFMNNFDTHPNAIIYHSHGAT D
Sbjct: 20  EKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFDTHPNAIIYHSHGATRD 79

Query: 92  HPGHKTKPSAP 102
           HPGHKTKPSAP
Sbjct: 80  HPGHKTKPSAP 90

[Close]

BLAST of Cp4.1LG05g12690 vs. ExPASy TrEMBL
Match: A0A6J1G7K5 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111451468 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 6.53e-49
Identity = 83/94 (88.30%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 18  MKLSAAFFLLSLLL---------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 77
           MKLSAAFFLL L+L         EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1   MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 78  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 102
           HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP
Sbjct: 61  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of Cp4.1LG05g12690 vs. ExPASy TrEMBL
Match: A0A6J1L3N5 (organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 6.27e-47
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 18  MKLSAAFFLLSLLL---------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 77
           MKLSAAFFLLSLLL         EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE
Sbjct: 1   MKLSAAFFLLSLLLLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60

Query: 78  HFMNNFDTHPNAIIYHSHGATHDHPGHKTKPSAP 102
            FMNNFDTHPNAIIYHSHGATHDHPGHKTK +AP
Sbjct: 61  RFMNNFDTHPNAIIYHSHGATHDHPGHKTKLTAP 94

[Close]

BLAST of Cp4.1LG05g12690 vs. ExPASy TrEMBL
Match: A0A6J1D5L4 (organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.83e-21
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 18  MKLSAAFFLL-SLLL---------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQS 77
           MKLS AFFLL SLLL         ++GEYWKK+MK+E IPE+LKELL+DD    S   Q+
Sbjct: 1   MKLSVAFFLLLSLLLFAEGGYGRKDQGEYWKKIMKEEEIPEVLKELLYDD----SVGGQN 60

Query: 78  EHFMNNFDTHPNAIIYHSHG----ATHDHPGHKTKPSA 101
           E FM+NFD HPNAIIYHSH     A H+H   K K +A
Sbjct: 61  ERFMSNFDPHPNAIIYHSHSHGAAAGHEHSDEKIKAAA 94

[Close]

BLAST of Cp4.1LG05g12690 vs. ExPASy TrEMBL
Match: A0A6J1FYV4 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.64e-20
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 18 MKLSAAFFLL-SLLL----------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQ 77
          MKLS AFFLL SL+L          ++G+YWKK+MK+E IPEMLKELLFDD S+V +  Q
Sbjct: 1  MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDD-SMVEN--Q 60

Query: 78 SEHFMNNFDTHPNAIIYHSHGATHDH 92
           + FMNNFD HPNAIIYH+H   H H
Sbjct: 61 KQRFMNNFDPHPNAIIYHAHAHAHGH 83

[Close]

BLAST of Cp4.1LG05g12690 vs. ExPASy TrEMBL
Match: A0A6J1JGL9 (organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.79e-20
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 18 MKLSAAFFLL-SLLL----------EKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQ 77
          MKLS AFFLL SL+L          ++G+YWKK+MK+E IPEMLKELLFDD S+V +  Q
Sbjct: 1  MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDD-SMVEN--Q 60

Query: 78 SEHFMNNFDTHPNAIIYHSHGATHDHPGH 95
           + FMNNFD HPNAIIYH+H   H H GH
Sbjct: 61 KQRFMNNFDPHPNAIIYHAHAHAHAH-GH 85

[Close]

BLAST of Cp4.1LG05g12690 vs. TAIR 10
Match: AT1G49310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.0e-05
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 25 FLLSLLLEKG-------EYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSEHFMNNFDTH 84
          FLL + L +G       EYWKK+MK+E +PE +KELL +           E F+ NFDT 
Sbjct: 17 FLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELLNN-----PFRTAQERFIQNFDTK 76

Query: 85 PNAIIYHS 86
             IIYH+
Sbjct: 77 SVVIIYHN 79

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g12690 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g12690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534667.1	8.13e-50	90.43	organ-specific protein P4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947675.1	1.35e-48	88.30	organ-specific protein P4-like [Cucurbita moschata]	[more]
KAG6605086.1	1.35e-48	89.36	hypothetical protein SDJN03_02403, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006974.1	1.30e-46	87.23	organ-specific protein P4-like [Cucurbita maxima]	[more]
KAG7035093.1	2.13e-42	97.18	hypothetical protein SDJN02_01888, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG05g12690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7K5	6.53e-49	88.30	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111451468 PE=...	[more]
A0A6J1L3N5	6.27e-47	87.23	organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 ...	[more]
A0A6J1D5L4	2.83e-21	57.14	organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV...	[more]
A0A6J1FYV4	2.64e-20	60.47	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=...	[more]
A0A6J1JGL9	2.79e-20	60.67	organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 ...	[more]

BLAST of Cp4.1LG05g12690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49310.1	4.0e-05	42.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	Organ_specific	coord: 32..63 e-value: 7.4E-6 score: 26.7
None	No IPR available	PANTHER	PTHR33731	PROTEIN, PUTATIVE-RELATED	coord: 18..93
None	No IPR available	PANTHER	PTHR33731:SF2	PROTEIN, PUTATIVE-RELATED	coord: 18..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g12690.1	Cp4.1LG05g12690.1	mRNA