Cp4.1LG05g12570 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g12570
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	glycine-rich RNA-binding protein-like
Location	Cp4.1LG05: 8798566 .. 8802856 (+)
RNA-Seq Expression	Cp4.1LG05g12570
Synteny	Cp4.1LG05g12570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGGATTGGAATAACTGAGGGAAGGATAAGATTTGGGGCGCATCCAAACAAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCTTGAGTTAAATACTGAGCAAACCCTAAAACTAACCATAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGTGTTCGTCTTCAGAGGTGTGGATTTGTGTCGATCCCCCTCTTTCTCTTTTCCTTCCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTCTGATTTCCATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGGTCCGTTTGTCATCGTCGAGATCTGGATTTGTTCCGATTCGGCTTTGACGATCCTAAATCTGATCTGTGACTCTCATCTGTTTTGTGTTACTTTACTACTACTACTACTCTCTTGATATGTTACTTTTATTACTCTCCTTTCATCGGTACGTTTACCTTCATCTTGGTTACAGAGACGAAGAACGATCGATTTTTCTTTAATTTTCATTTTTCTTCTTTTGATTTTTGTTCCAGTTTGCCTCAATTGTTGTGGTTCTGTGACTGATCTTTGTTTTCTTGTGATTATTGTTATCCAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCTATCGAAGCAATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTCAACGAGGCTCAGCAAAGAGGCGGTGGCGGCGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGTGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGGTGGAGAAATTAGGCGGTGGTGCATTACGATTTAGCTTTTGGTTTCGTCGAAGTATTAGTGTGATGATAAAAAGAAAAAAAAAAATCTTAGCAGCCTTTTGATTTCCCTGTACTGTGTTCCGTTTGGGTGCTCTCTTTTTTTGACCGATGACCGATGGGTTTCGTGTTCCTCATTATGTCTCTGTTACAACGAAAAAATGATATAAGAAAATGAAGTAGTGCAGCTCTTCGTTCTCAACAAATCTTTGTTTTCTGTTCATCCTTTGTCTCTGCCGAATTTCCGCCATGGCCAAGAATCTCCATTAAAGGGGTTATTCATAAAAAGTAAGATCCATTTTCATGATTTTTTCAGAGGTGTCCTGTACTGTGACCATAATTATTGCACTGGGAACGGCAAATGGGGAAGATAATTATTAGTTTTTAATATAATTTGGCTGTAGTTTTGGTCTGATCCGATTGACGACAGGTAAGCAGAAAATATCGTGTAGGAGATTCGAGATATTTTTGTGGAAAAAGATGTGAGATATTTTTGCAATGATTCGTGGTATATTTCTTTTTTAATTGGGCCATGATGATGGGTCTGCCACATCGACTTCCGTAATGGACAAGTGGGCGTGGAATCTGATCGTTGAAGGAATATTCTTTCTTTCAAATTTTGAATTTAATTTATCAAATGGCTAAACAAAGAAGGGGTGGGGTGGACATCGAATAGAGTGTGTCAGCAAAGACGTTGGGCCTTGAAGGGGTTGGACTGGGTGGTGTGCTAGAGGATGCTGAAACCCAAAAAGTGATGGGTGGTGTGCTAGAGGATGCTGGAACCCAAAAAGGGATGGGTGGTGTGCTAGCAAGGGTGGTGTGCTAGAGGATGCTGTAACCCAAAAAGGGATGGGTGGTGTGCTAGAGGATGCTGGAACCCAAAAAGGGATGGATTGTAAGATCCCATGTCGATTGAAGAGAGAAATGAGTACCACAAGGGGTAGATGGGATGGTGTGCCAACGAGGATACTGGAACCTGAAAAGAGATGGATTGGTAATGGATTGTGAGATCCTACATGAACGAGTACCAGCAATGACGCTTGGCCTCAAGAGGAGATTATAAAATTCCACACCGGTTGGGTTTTAGGGTCAAAAAGAAAAAAAAAAAAAAAAAAAAAGGGAAAAAAGAGGAAAGACATATGGGGTCCAATTCCCGACGTATTGTTGTCGTTTTTCGCTGTAGCCGAATATTGTGGCCATGCCCTTCCACACCTTCTCACATGCCCTTCTCCTTCTCTCTCTCTCTCTCTCCCTTTTCCCAATAACAATATTTCCACTAAATACTATTATTAATCCTATTTATCTTTATTATTTCACAACAACTTCCTAATTTTAGCTACCACCCATTAATTCAATTACCAATATCAACTTCATCTCTACTTTCTATCATCATCTTGTTATCAGCAACACAACCGTCATACTTCTACATCTGAAACCTTATTGGGACTCGGGCAAAACAAGCTTATAATACTTGCTTAAGGATTACTCGGTGATTACGACACCTATTATGTCCTACCGAGCCATTATAATACTTATTAGATCCTATTTGTTAGATGGTATGATATTGTCTCCTTTGAGCATAAGCTCTCATGGTTTTGTTTTGGGCTTCCCCAAAAAGTCTCACCTCAATGGAGAGAGTATTCTTTGATTATAAACCCATGATCATTCCCTAAATTAGCCGATGTGGGACTTTCATCATCCAACACTATCCATCTTTTTAGTTATTTATCGAATGCTATGGGCCATTACAACACTTGTTGGGCTCTATCAAGCAAGTATTGTTCCAACCGAGAACTATTGAGTCATATTGATGGTTTATGTCGCCTTGAGCATCAACAATGACATCTGACTTGACTTTACTAATCGAAACAAACAAATGAGATTGTCTTTCCATTTAAGATTTTCCATCCATCCGTGGAGAGCTTGTATGATCTTTTAACTCACCTGAAATGTGACATACTGTCATATTTCTCACTAACCAAAATCTACCCCAAAACCTGCCTTAGACTTTCGATGCATCCACTACAAAGCCTTGACTTGAGGCCCCATCTAACCCCTACTAAGCTTTGTCATTAACAGCACTAATGATCTTGTCATATATGACCTTGCTTGAACCTTAGTTTGACTTTCTCACACAATCCTTTTGTGTTAAGTGATGTACTGTCCTTTTTGGTCGCATCACAACACTTCTCTCTCAACTCTTGACAAGACCTGATAAACCATGGCAGATCCGTTCATAACTTCGTCCGTTCATTCATAGGGACGAAGAAAAGAGAGGCTTGTAGATCACACCACAACGAGTTGCTATGTGTGAGTTTTATTGAATGTCAATCCAAGCAAAGTAAGACCACAAATAGAACTTAATAACTTCAGAAGCATAAAATGAACTTCACGTAGAATACTAAACGTTAATCAGATGAGAAAATTGTAGATACTTCACTAATATAGGCCCAACCAATAACTCTGCAGCTGTAAATAATAAAGGAATGAATAAAATGTCTTGAAATNGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGTGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGGTGGAGAAATTAGGCGGTGGTGCATTACGATTTAGCTTTTGGTTTCGTCGAAGTATTAGTGTGATGATAAAAAGAAAAAAAAAAATCTTAGCAGCCTTTTGATTTCCCTGTACTGTGTTCCGTTTGGGTGCTCTCTTTTTTTGACCGATGACCGATGGGTTTCGTGTTCCTCATTATGTCTCTGTTACAACGAAAAAATGATATAAGAAAATGAAGTAGTGCAGCTCTTCGTTCTCAACAAATCTTTGTTTTCTGTTCATCCTTTGTCTCTGCCGAATTTCCGCCATGGCCAAGAATCTCCATTAAAGGGGTTATTCATAAAAAGTAAGATCCATTTTCATGATTTTTTCAGAGGTGTCCTGTACTGTGACCATAATTATTGCACTGGGAACGGCAAATGGGGAAGATAATTATTAGTTTTTAATATAATTTGGCTGTAGTTTTGGTCTGATCCGATTGACGACA

mRNA sequence

TGGGGATTGGAATAACTGAGGGAAGGATAAGATTTGGGGCGCATCCAAACAAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCTTGAGTTAAATACTGAGCAAACCCTAAAACTAACCATAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGTGTTCGTCTTCAGAGGTGTGGATTTGTGTCGATCCCCCTCTTTCTCTTTTCCTTCCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTCTGATTTCCATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGGTCTGATCCGATTGACGACAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGTTTTGGTCTGATCCGATTGACGACA

Coding sequence (CDS)

ATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGGTCTGATCCGATTGACGACAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGTTTTGGTCTGATCCGATTGACGACA

Protein sequence

MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIRLTTGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGSEGGFGLIRLTT

Homology

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.4e-21
Identity = 72/139 (51.80%), Postives = 85/139 (61.15%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MA++ VEYRCFVGGLAWAT N +LE AF+S+GEI+++K++ DRETGRSRGFGFVTF    
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 61  ---------------------GLIRLTTGGYGGGGYGGG----------RDRGYGGGGGD 105
                                   +   GG GGGGYGGG          RD GYGGGGG 
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGYGGGGGY 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-19
Identity = 74/146 (50.68%), Postives = 79/146 (54.11%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MAS  VEYRCFVGGLAWATD  +LE AFS FGE+V++KI+NDRETGRSRGFGFVTF    
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  --------------------------------GLIRLTTGGY--------GGGGYGGGRD 103
                                           G  R   GGY        GGGGYGGGR 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRR 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-19
Identity = 69/137 (50.36%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           MA++ VEYRCFVGGLAWAT+N  LE+AF++FG+++++K++ DRETGRSRGFGFVTF   +
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  ------------------LTT------------GGY--GGGGYGGGRDRGYGGGGGD-GG 105
                             +T             GGY  GGGGYGG    GYGGGGG  GG
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGGGGYGG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-18
Identity = 69/138 (50.00%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF------- 63
           + VEYRCFVGGLAWAT++ +LE+AFS FG+I ++KI+NDRETGRSRGFGFVTF       
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  ------------------------------GLIRLTTGGYGGGGYGGGRDRGYGGGGGDG 105
                                         G      GGYGGGG  GGR  G GGGGG G
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREG-GGGGGYG 121

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.5e-18
Identity = 74/143 (51.75%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MAS  VEYRCFVGGLAWATD+ ALE AFS +GE++++KI+NDRETGRSRGFGFVTF    
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  --------------------------------GLIRLTTGGY---GGGGYGGGRDRGYGG 105
                                           G  R   GGY   GGGGYGGG   GYGG
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGG-GGGYGG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: XP_023533100.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533101.1 glycine-rich RNA-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139 bits (351), Expect = 1.57e-39
Identity = 96/168 (57.14%), Postives = 97/168 (57.74%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: XP_023006869.1 (glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 136 bits (343), Expect = 1.69e-38
Identity = 96/154 (62.34%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  ---------------------------------------------GLIRLTTGGYGGGG- 103
                                                        G      GGYGGGG 
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGGYGGGGGGYGGGGG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: KAG6605080.1 (hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (339), Expect = 1.07e-37
Identity = 96/169 (56.80%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: XP_022947194.1 (glycine-rich RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 135 bits (339), Expect = 1.07e-37
Identity = 96/169 (56.80%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: XP_023006868.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 131 bits (329), Expect = 3.82e-36
Identity = 96/172 (55.81%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  --------------------------------------------------------GLIR 103
                                                                   G   
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy TrEMBL
Match: A0A6J1L3C8 (glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 8.20e-39
Identity = 96/154 (62.34%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  ---------------------------------------------GLIRLTTGGYGGGG- 103
                                                        G      GGYGGGG 
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGGYGGGGGGYGGGGG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 135 bits (339), Expect = 5.17e-38
Identity = 96/169 (56.80%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 1.85e-36
Identity = 96/172 (55.81%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  --------------------------------------------------------GLIR 103
                                                                   G   
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 6.76e-34
Identity = 92/171 (53.80%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  ------------------------------------------------------------ 103
                                                                       
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

[Close]

BLAST of Cp4.1LG05g12570 vs. ExPASy TrEMBL
Match: A0A151U7A9 (Glycine-rich RNA-binding protein GRP1A OS=Cajanus cajan OX=3821 GN=KK1_007886 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 5.21e-30
Identity = 74/128 (57.81%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           M+S+ +EYRCFVGGLAWATDN ALEKAFS +GEIVE+K++NDRETGRSRGFGFVTF   +
Sbjct: 1   MSSAEIEYRCFVGGLAWATDNDALEKAFSQYGEIVESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  LTT-----------------------------GGYGGGG--YGGGRDRGYGGGGGDGG-R 96
                                           GGYGGGG  YGGGRDRGYG    DGG R
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRYGGGGGGYGGGGGGYGGGRDRGYG----DGGSR 120

[Close]

BLAST of Cp4.1LG05g12570 vs. TAIR 10
Match: AT4G39260.4 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-19
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF------- 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF       
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  -GLIRLTTGGYGGGGY---GGGRDRGYGGGGGDGGRYQRGGGGGG 98
             +  +   G GGGG    GGGR  G G GGGDGG Y  GGGGGG
Sbjct: 62  DAIEEMNGSGGGGGGRGYGGGGRREGGGYGGGDGGSY--GGGGGG 104

[Close]

BLAST of Cp4.1LG05g12570 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 68/134 (50.75%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF    
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  -----------------------GLIRLTTGG---YGGGGYGGGRDRGYGGGG--GDGGR 103
                                     R + GG    GGG YGGG  R  GGGG  G GG 
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGSYGGGGGRREGGGGYSGGGGG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 88.2 bits (217), Expect = 4.5e-18
Identity = 70/136 (51.47%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF    
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  -------GLI------RLTT------------GGYGGGGYGGGRDRGYGGGGGDGGRYQR 105
                  G+       R  T            GG+ GGG GG R  G GG  G GG Y  
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

[Close]

BLAST of Cp4.1LG05g12570 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 62/124 (50.00%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF------- 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF       
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  --------------------GLIRLTTGGYGG-GGYGGGRDRGYGGG--GGDGGRYQRGG 98
                                  R + GG GG GG GGG   G GGG  GG GG Y  GG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

[Close]

BLAST of Cp4.1LG05g12570 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-16
Identity = 66/146 (45.21%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF------- 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF       
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  ------------------------------GLIRLTTGGY---GGGGYGGGRDRGYGGGG 105
                                         G    + GGY   GGGGY GG   GY GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g12570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10979	9.4e-21	51.80	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]
P49311	5.2e-19	50.68	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q99070	5.2e-19	50.36	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
Q03878	5.7e-18	50.00	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
P49310	7.5e-18	51.75	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Cp4.1LG05g12570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533100.1	1.57e-39	57.14	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
XP_023006869.1	1.69e-38	62.34	glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 [Cucur...	[more]
KAG6605080.1	1.07e-37	56.80	hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022947194.1	1.07e-37	56.80	glycine-rich RNA-binding protein 1-like [Cucurbita moschata]	[more]
XP_023006868.1	3.82e-36	55.81	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g12570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L3C8	8.20e-39	62.34	glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cuc...	[more]
A0A6J1G631	5.17e-38	56.80	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1L652	1.85e-36	55.81	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FRL7	6.76e-34	53.80	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A151U7A9	5.21e-30	57.81	Glycine-rich RNA-binding protein GRP1A OS=Cajanus cajan OX=3821 GN=KK1_007886 PE...	[more]

BLAST of Cp4.1LG05g12570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39260.4	3.1e-19	58.10	cold, circadian rhythm, and RNA binding 1	[more]
AT2G21660.2	1.5e-18	50.75	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.1	4.5e-18	51.47	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.2	1.1e-16	50.00	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.1	2.5e-16	45.21	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..76 e-value: 3.8E-8 score: 43.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..56 e-value: 2.3E-14 score: 53.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..56 score: 13.003776
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 7..57 e-value: 2.2E-18 score: 68.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..110
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..57
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..57
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g12570.1	Cp4.1LG05g12570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006858	extracellular transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
cellular_component	GO:0005615	extracellular space
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0003676	nucleic acid binding