Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACCAATACCACCGGCACCGTCGCTTCCCACGAGCAACTCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCATCTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCATTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTTGCGCTCCGCTTGGCCGCCGACAACATCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTCAAGAATACTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAATTACGAAATATGTAATTCTGATTTTTTGTGCAACAATTTGTTGCCCACCAATGAATTTAGATCACTGAGAGTGATAATAAATTTCTCTGTCTCAACTTTCAATTGACTCAATGTTCACCAAATTGTATAACAACAATCATCAAATAATTAGCCATGGAGAAATAAAATCGAGGAGGTTGCGCTAAGGGAAAACCAAACACGAGGAGAGATGAATACGACTCCTCTCATAGATTGAGTACAGCCCTGATATGTGTTAGTGCTACCTAG
mRNA sequence
ATGTCTCTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACCAATACCACCGGCACCGTCGCTTCCCACGAGCAACTCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCATCTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCATTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTTGCGCTCCGCTTGGCCGCCGACAACATCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTCAAGAATACTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGTGCTACCTAG
Coding sequence (CDS)
ATGTCTCTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACCAATACCACCGGCACCGTCGCTTCCCACGAGCAACTCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCATCTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCATTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTTGCGCTCCGCTTGGCCGCCGACAACATCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTCAAGAATACTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGTGCTACCTAG
Protein sequence
MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNFHIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIESAT
Homology
BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match:
KAG6605228.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 303 bits (776), Expect = 1.52e-102
Identity = 152/158 (96.20%), Postives = 156/158 (98.73%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTFGDSLSFQFSIRTNTT TVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPS+PL
Sbjct: 1 MSLTFGDSLSFQFSIRTNTTATVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADN+DLNF
Sbjct: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNVDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVVDVDAIEMIWVDLDPFL++EYSPP MNGAPASAIE
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPPMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match:
XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])
HSP 1 Score: 300 bits (767), Expect = 3.57e-101
Identity = 149/158 (94.30%), Postives = 155/158 (98.10%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTFGDSLSFQFSIRTNTTGT+ASHE MQFVELRLGHSSHLISRSSRQILQQSPS+PL
Sbjct: 1 MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIP+AACDIIYQEISSFALRL ADN+DLNF
Sbjct: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVVDVDAIEMIWVDLDPFL++EYSPPAMNGAPASAIE
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match:
XP_022947840.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])
HSP 1 Score: 266 bits (680), Expect = 6.09e-88
Identity = 135/158 (85.44%), Postives = 146/158 (92.41%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTFGDSLSFQ S RTN+TGT+ASHEQ MQFVELRLGHSSHLISRSSRQILQQ+PS+P+
Sbjct: 1 MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
G++LFPFILRDL HPPFL HVL FLSSFSIPIA C+II+ EISSFAL LAA N+DLNF
Sbjct: 61 GDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVVDVDAIEMIWVDLDPFLI+EYSPPAMNGAPASAIE
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match:
XP_023533113.1 (RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 258 bits (660), Expect = 6.95e-85
Identity = 132/158 (83.54%), Postives = 143/158 (90.51%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTFGDSLSFQ S RTNTTG +ASHEQ MQFVELRLGHSSHLISRSSRQILQQ+PS+P+
Sbjct: 1 MSLTFGDSLSFQCSFRTNTTGNLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
G++LFPFILRDL PPFL HVL FLSSF+IPIA C+II+ EISSFAL LAA N+DLNF
Sbjct: 61 GDALFPFILRDLLDPPFLSKSHVLRFLSSFTIPIAVCNIIFAEISSFALHLAAGNVDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVVDVDAIEMIWVDLDPFLI+EYSP AMNGAPASAIE
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPAAMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match:
KAG6605223.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 255 bits (652), Expect = 1.15e-83
Identity = 130/158 (82.28%), Postives = 144/158 (91.14%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTFGDSLSFQ S RTN+TGT+ASHEQ MQFVELRLGHSSHLISRSSRQILQQ+PS+P+
Sbjct: 1 MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
G++LFPFILRDL PPFL HVL F+SSFSIPIA C+II+ EISSFAL LAA ++DL+F
Sbjct: 61 GDALFPFILRDLLDPPFLSKSHVLRFMSSFSIPIAVCNIIFAEISSFALHLAAGDVDLDF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVVDVDAIEMIWVDLDPFLI+EYSPPAMN APASAIE
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNRAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. ExPASy TrEMBL
Match:
A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)
HSP 1 Score: 300 bits (767), Expect = 1.73e-101
Identity = 149/158 (94.30%), Postives = 155/158 (98.10%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTFGDSLSFQFSIRTNTTGT+ASHE MQFVELRLGHSSHLISRSSRQILQQSPS+PL
Sbjct: 1 MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIP+AACDIIYQEISSFALRL ADN+DLNF
Sbjct: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVVDVDAIEMIWVDLDPFL++EYSPPAMNGAPASAIE
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. ExPASy TrEMBL
Match:
A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)
HSP 1 Score: 266 bits (680), Expect = 2.95e-88
Identity = 135/158 (85.44%), Postives = 146/158 (92.41%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTFGDSLSFQ S RTN+TGT+ASHEQ MQFVELRLGHSSHLISRSSRQILQQ+PS+P+
Sbjct: 1 MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
G++LFPFILRDL HPPFL HVL FLSSFSIPIA C+II+ EISSFAL LAA N+DLNF
Sbjct: 61 GDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVVDVDAIEMIWVDLDPFLI+EYSPPAMNGAPASAIE
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. ExPASy TrEMBL
Match:
A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)
HSP 1 Score: 242 bits (618), Expect = 8.24e-79
Identity = 121/158 (76.58%), Postives = 142/158 (89.87%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTF D LSFQ SI++ GTVAS +Q MQ +ELRLG+S+HLISRSSRQILQQ+P++P+
Sbjct: 1 MSLTFHDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPM 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
G++LFPF+LRDL+HPPFL N +VL FLSSFSIPIAACDIIY+EISSFAL+LAA N+DLNF
Sbjct: 61 GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVV+VD IEMIWVDLDPFL++EYSP MNGAPASAIE
Sbjct: 121 HIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. ExPASy TrEMBL
Match:
A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)
HSP 1 Score: 241 bits (614), Expect = 3.34e-78
Identity = 121/158 (76.58%), Postives = 141/158 (89.24%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSLTF D LSFQ SI++ GTVAS +Q +Q +ELRLGHS+HLISRSSRQILQQ+PS+P+
Sbjct: 1 MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPI 60
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
G++LFPF+LRDL+HPPFL N +VL FLSSFSIPIAACDIIY+EISSFAL+LAA N+DLNF
Sbjct: 61 GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNF 120
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
HIVV+VD EMIWVDLDPFL++EYSP MNGAPASAIE
Sbjct: 121 HIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIE 158
BLAST of Cp4.1LG05g11570 vs. ExPASy TrEMBL
Match:
A0A6J1G826 (E3 ubiquitin-protein ligase RNF38-like OS=Cucurbita moschata OX=3662 GN=LOC111451599 PE=4 SV=1)
HSP 1 Score: 197 bits (502), Expect = 1.45e-60
Identity = 101/158 (63.92%), Postives = 124/158 (78.48%), Query Frame = 0
Query: 1 MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPL 60
MSL+ D LS+Q S+R ++ S EQ MQ +ELR+GHS +LISRSS QILQ+SPS+P+
Sbjct: 48 MSLSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPM 107
Query: 61 GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNF 120
G++LF FILRD E PPFL N VL FLSSF IPI AC++IY +ISSFA + AD++ LNF
Sbjct: 108 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNF 167
Query: 121 HIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 158
H+VVDV+ EM WVDLDPFL++E SPP MNGAPASAIE
Sbjct: 168 HMVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIE 205
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6605228.1 | 1.52e-102 | 96.20 | E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| XP_023006824.1 | 3.57e-101 | 94.30 | RING-H2 finger protein ATL16-like [Cucurbita maxima] | [more] |
| XP_022947840.1 | 6.09e-88 | 85.44 | probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata] | [more] |
| XP_023533113.1 | 6.95e-85 | 83.54 | RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6605223.1 | 1.15e-83 | 82.28 | putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1L387 | 1.73e-101 | 94.30 | RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE... | [more] |
| A0A6J1G809 | 2.95e-88 | 85.44 | probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1... | [more] |
| A0A6J1G7Z5 | 8.24e-79 | 76.58 | E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114... | [more] |
| A0A6J1KYV1 | 3.34e-78 | 76.58 | E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499... | [more] |
| A0A6J1G826 | 1.45e-60 | 63.92 | E3 ubiquitin-protein ligase RNF38-like OS=Cucurbita moschata OX=3662 GN=LOC11145... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
