Cp4.1LG05g11410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g11410
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionglycosyl hydrolase family protein 43
LocationCp4.1LG05: 7750020 .. 7750394 (+)
RNA-Seq ExpressionCp4.1LG05g11410
SyntenyCp4.1LG05g11410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACATCAGGGTGCACGGGATGGGCACCGAATGAGGCATTGACCCACGCAGCAGAGTCAATCATGGGTCCATGGGAGACGATGGAAAACCCGTGTATAGGAGGAAACAAGATGTTTCGACTAGCTACATTCTTTGCTCAGAGCACATTTGTTCTTCCCCTACCTTCATATCCCAGCTTGTTTATTTTCATGGCAGACCGATGGAATCCCGCCAACCTTAGAGACTCGAGGTACATTTGGTTGCCATTGATGGTCGGAGGACTTGTCGATGAACCACTCGACTACAATTTTGGGTTCCCTTTGTGGTCAAGAGTGTCTATATATTGGCATAGAAAGTGGAAGCTTCCTAAGGGCTGGAATCCGTTGAAATGA

mRNA sequence

ATGATCACATCAGGGTGCACGGGATGGGCACCGAATGAGGCATTGACCCACGCAGCAGAGTCAATCATGGGTCCATGGGAGACGATGGAAAACCCGTGTATAGGAGGAAACAAGATGTTTCGACTAGCTACATTCTTTGCTCAGAGCACATTTGTTCTTCCCCTACCTTCATATCCCAGCTTGTTTATTTTCATGGCAGACCGATGGAATCCCGCCAACCTTAGAGACTCGAGGTACATTTGGTTGCCATTGATGGTCGGAGGACTTGTCGATGAACCACTCGACTACAATTTTGGGTTCCCTTTGTGGTCAAGAGTGTCTATATATTGGCATAGAAAGTGGAAGCTTCCTAAGGGCTGGAATCCGTTGAAATGA

Coding sequence (CDS)

ATGATCACATCAGGGTGCACGGGATGGGCACCGAATGAGGCATTGACCCACGCAGCAGAGTCAATCATGGGTCCATGGGAGACGATGGAAAACCCGTGTATAGGAGGAAACAAGATGTTTCGACTAGCTACATTCTTTGCTCAGAGCACATTTGTTCTTCCCCTACCTTCATATCCCAGCTTGTTTATTTTCATGGCAGACCGATGGAATCCCGCCAACCTTAGAGACTCGAGGTACATTTGGTTGCCATTGATGGTCGGAGGACTTGTCGATGAACCACTCGACTACAATTTTGGGTTCCCTTTGTGGTCAAGAGTGTCTATATATTGGCATAGAAAGTGGAAGCTTCCTAAGGGCTGGAATCCGTTGAAATGA

Protein sequence

MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPSLFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGWNPLK
Homology
BLAST of Cp4.1LG05g11410 vs. NCBI nr
Match: KAG6605233.1 (hypothetical protein SDJN03_02550, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279 bits (714), Expect = 9.14e-91
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS
Sbjct: 318 MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 377

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW
Sbjct: 378 LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 437

Query: 121 NPLK 124
           NPLK
Sbjct: 438 NPLK 441

BLAST of Cp4.1LG05g11410 vs. NCBI nr
Match: XP_023534654.1 (uncharacterized protein LOC111796164 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534655.1 uncharacterized protein LOC111796164 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279 bits (714), Expect = 2.69e-90
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS
Sbjct: 356 MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 415

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW
Sbjct: 416 LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 475

Query: 121 NPLK 124
           NPLK
Sbjct: 476 NPLK 479

BLAST of Cp4.1LG05g11410 vs. NCBI nr
Match: XP_022947844.1 (uncharacterized protein LOC111451604 [Cucurbita moschata])

HSP 1 Score: 279 bits (714), Expect = 2.69e-90
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS
Sbjct: 356 MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 415

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW
Sbjct: 416 LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 475

Query: 121 NPLK 124
           NPLK
Sbjct: 476 NPLK 479

BLAST of Cp4.1LG05g11410 vs. NCBI nr
Match: KAG7035199.1 (hypothetical protein SDJN02_01994, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278 bits (710), Expect = 1.08e-89
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQS+FVLPLPSYPS
Sbjct: 356 MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSSFVLPLPSYPS 415

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW
Sbjct: 416 LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 475

Query: 121 NPLK 124
           NPLK
Sbjct: 476 NPLK 479

BLAST of Cp4.1LG05g11410 vs. NCBI nr
Match: XP_023007054.1 (uncharacterized protein LOC111499658 [Cucurbita maxima])

HSP 1 Score: 275 bits (704), Expect = 8.64e-89
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS
Sbjct: 356 MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 415

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW
Sbjct: 416 LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 475

Query: 121 NPLK 124
           N LK
Sbjct: 476 NLLK 479

BLAST of Cp4.1LG05g11410 vs. ExPASy TrEMBL
Match: A0A6J1G831 (uncharacterized protein LOC111451604 OS=Cucurbita moschata OX=3662 GN=LOC111451604 PE=3 SV=1)

HSP 1 Score: 279 bits (714), Expect = 1.30e-90
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS
Sbjct: 356 MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 415

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW
Sbjct: 416 LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 475

Query: 121 NPLK 124
           NPLK
Sbjct: 476 NPLK 479

BLAST of Cp4.1LG05g11410 vs. ExPASy TrEMBL
Match: A0A6J1L3W6 (uncharacterized protein LOC111499658 OS=Cucurbita maxima OX=3661 GN=LOC111499658 PE=3 SV=1)

HSP 1 Score: 275 bits (704), Expect = 4.18e-89
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS
Sbjct: 356 MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 415

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW
Sbjct: 416 LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 475

Query: 121 NPLK 124
           N LK
Sbjct: 476 NLLK 479

BLAST of Cp4.1LG05g11410 vs. ExPASy TrEMBL
Match: A0A5A7TVD5 (Glycoside hydrolase, family 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00060 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 5.19e-86
Identity = 113/124 (91.13%), Postives = 122/124 (98.39%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           M+TSGCTGWAPNEALTHAAESIMGPWETM NPC+GGNKMFRLATFF+QSTFVLP+PSYP+
Sbjct: 219 MVTSGCTGWAPNEALTHAAESIMGPWETMGNPCMGGNKMFRLATFFSQSTFVLPVPSYPN 278

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPA+LRDSRY+WLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKW+LP+GW
Sbjct: 279 LFIFMADRWNPADLRDSRYLWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWRLPQGW 338

Query: 121 NPLK 124
           N LK
Sbjct: 339 NSLK 342

BLAST of Cp4.1LG05g11410 vs. ExPASy TrEMBL
Match: A0A1S3C6G0 (uncharacterized protein LOC103497430 OS=Cucumis melo OX=3656 GN=LOC103497430 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 2.67e-84
Identity = 113/124 (91.13%), Postives = 122/124 (98.39%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           M+TSGCTGWAPNEALTHAAESIMGPWETM NPC+GGNKMFRLATFF+QSTFVLP+PSYP+
Sbjct: 355 MVTSGCTGWAPNEALTHAAESIMGPWETMGNPCMGGNKMFRLATFFSQSTFVLPVPSYPN 414

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPA+LRDSRY+WLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKW+LP+GW
Sbjct: 415 LFIFMADRWNPADLRDSRYLWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWRLPQGW 474

Query: 121 NPLK 124
           N LK
Sbjct: 475 NSLK 478

BLAST of Cp4.1LG05g11410 vs. ExPASy TrEMBL
Match: A0A0A0LPY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285310 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 1.07e-83
Identity = 113/124 (91.13%), Postives = 121/124 (97.58%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           M+TSGCTGWAPNEALTHAAESIMGPWETM NPCIGGNKMFRLATFF+QSTFVLPLPSYP+
Sbjct: 355 MVTSGCTGWAPNEALTHAAESIMGPWETMGNPCIGGNKMFRLATFFSQSTFVLPLPSYPN 414

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLPKGW 120
           LFIFMADRWNPA+LRDSRY+WLPLMVGGLVD+PLDYNF FPLWSRVSIYWHRKW+LP+GW
Sbjct: 415 LFIFMADRWNPADLRDSRYVWLPLMVGGLVDQPLDYNFRFPLWSRVSIYWHRKWRLPQGW 474

Query: 121 NPLK 124
           N LK
Sbjct: 475 NSLK 478

BLAST of Cp4.1LG05g11410 vs. TAIR 10
Match: AT3G49880.1 (glycosyl hydrolase family protein 43 )

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-58
Identity = 92/117 (78.63%), Postives = 106/117 (90.60%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           MITSGCTGWAPNEAL HAAESIMGPWET+ NPC+GGN +FR  TFFAQSTFV+PLP  P 
Sbjct: 342 MITSGCTGWAPNEALAHAAESIMGPWETLGNPCVGGNSIFRSTTFFAQSTFVIPLPGVPG 401

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLP 118
           +FIFMADRWNPA+LRDSRY+WLPL+VGG  D PL+Y+FGFP+WSRVS+YWHR+W+LP
Sbjct: 402 VFIFMADRWNPADLRDSRYLWLPLIVGGPADRPLEYSFGFPMWSRVSVYWHRQWRLP 458

BLAST of Cp4.1LG05g11410 vs. TAIR 10
Match: AT5G67540.2 (Arabinanase/levansucrase/invertase )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 91/117 (77.78%), Postives = 104/117 (88.89%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           M+TS CTGWAPNEAL HAAESIMGPWE + NPCIGGNK+FRL TFFAQST+V+PLP  P 
Sbjct: 355 MVTSWCTGWAPNEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPG 414

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLP 118
            FIFMADRWNPA+LRDSRY+WLPL++GG  D+PL++NFGFP WSRVSIYWH KW+LP
Sbjct: 415 AFIFMADRWNPADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 471

BLAST of Cp4.1LG05g11410 vs. TAIR 10
Match: AT5G67540.1 (Arabinanase/levansucrase/invertase )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 91/117 (77.78%), Postives = 104/117 (88.89%), Query Frame = 0

Query: 1   MITSGCTGWAPNEALTHAAESIMGPWETMENPCIGGNKMFRLATFFAQSTFVLPLPSYPS 60
           M+TS CTGWAPNEAL HAAESIMGPWE + NPCIGGNK+FRL TFFAQST+V+PLP  P 
Sbjct: 350 MVTSWCTGWAPNEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPG 409

Query: 61  LFIFMADRWNPANLRDSRYIWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWKLP 118
            FIFMADRWNPA+LRDSRY+WLPL++GG  D+PL++NFGFP WSRVSIYWH KW+LP
Sbjct: 410 AFIFMADRWNPADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 466

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605233.19.14e-91100.00hypothetical protein SDJN03_02550, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023534654.12.69e-90100.00uncharacterized protein LOC111796164 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022947844.12.69e-90100.00uncharacterized protein LOC111451604 [Cucurbita moschata][more]
KAG7035199.11.08e-8999.19hypothetical protein SDJN02_01994, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023007054.18.64e-8999.19uncharacterized protein LOC111499658 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1G8311.30e-90100.00uncharacterized protein LOC111451604 OS=Cucurbita moschata OX=3662 GN=LOC1114516... [more]
A0A6J1L3W64.18e-8999.19uncharacterized protein LOC111499658 OS=Cucurbita maxima OX=3661 GN=LOC111499658... [more]
A0A5A7TVD55.19e-8691.13Glycoside hydrolase, family 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3C6G02.67e-8491.13uncharacterized protein LOC103497430 OS=Cucumis melo OX=3656 GN=LOC103497430 PE=... [more]
A0A0A0LPY31.07e-8391.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285310 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G49880.11.3e-5878.63glycosyl hydrolase family protein 43 [more]
AT5G67540.21.9e-5777.78Arabinanase/levansucrase/invertase [more]
AT5G67540.11.9e-5777.78Arabinanase/levansucrase/invertase [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023296Glycosyl hydrolase, five-bladed beta-propellor domain superfamilyGENE3D2.115.10.20Glycosyl hydrolase domain; family 43coord: 1..96
e-value: 9.4E-21
score: 76.1
IPR023296Glycosyl hydrolase, five-bladed beta-propellor domain superfamilySUPERFAMILY75005Arabinanase/levansucrase/invertasecoord: 1..84
NoneNo IPR availablePANTHERPTHR22925GLYCOSYL HYDROLASE 43 FAMILY MEMBERcoord: 1..122
NoneNo IPR availablePANTHERPTHR22925:SF52GLYCOSYL HYDROLASE FAMILY 43 PROTEINcoord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11410.1Cp4.1LG05g11410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds