Cp4.1LG05g11040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g11040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA-binding family protein isoform 2
Location	Cp4.1LG05: 7457250 .. 7465469 (+)
RNA-Seq Expression	Cp4.1LG05g11040
Synteny	Cp4.1LG05g11040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTTAGTTGAAACAAATATATTAAGATTTGAAGTTATATGAATCAAATTGGGACCAAACTAAATTAGGGAATAAATAAGGCTTAAAAATATGTTATTAAAATAAAATAAATAATAAAAAGAAACAGGAGAGGAGGGAGAGAGATGAGATCTGCTCTAGGTGTTTCTTGAATTCCCAGAAAATCTGATTGAAGGTCAGTTGAGCGCGTTATCCACGAATCTATACTTTTTTTTTGTCTGTTTCAATTGTTATTTTGAAGATTTAATCGCAAACAAGAAATTGAAACAAGGAACAAACCGAATGATGGAATCGGTGAGATTCATTTGGTATTTAACTATTGTGTGTGAGAAAGAGGTGTGCTTCTTCTTCTTATTATGTGCAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGTGGGTCTTAGAGCGAGCGAGGAAGAACAGGAGGAGAGTGAGATATTCTTTTTTCCCCTTTAGGGTTCAATTTCATTGCGTTAACTGCCCCAATTCATCATGGATCGGAAGCTTGTGGTTTGTTTTTTCTTTTTCATTTGTTTCTTCTATCAAGTAATTCGGTTAAGGGTTCGATTCGTTTTATTTATTTATTTCGTGAAATTTAGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGTTTGCCTTTTCCCCTATTCCTATGATGCATTCGTACTATCCATTCTTTCTTATGGGTTTTTAAGAAAGCATGCCTTTGTCATGAATTCAGTGATTTTGAAAGTGTGAGGTGCACTGGAGCGTAATAACTTCAAAATAAAAAAGATTTGTAAACACTTTATATAATACATGAACATGAAGATTGTTATGAATAAGAACATAATGAAAATTTTAAGAATTAAAAGCTTTTATTAGAGATTGTGGAGGAAAAATGAAGGTGTTAAGAGTGCTTTTATTTTCTTCCTAAAACATTACTAAAAAAAATTAGTGCTTCAAGCATCGAGGTGCCCACCCCAGCTATCGATACCTGTGCCTCAAGCTGGCCTTATTAAGAGTGCCTAGCTGTTTTGAAGCAATACACCGAGTGTGGGCTTTTCTGTGTGCCTGCCATGGCATGCTTGATCTATTGGCGTTTAGATTGTAGGAATGTATGTGCTGTTTATGTTTGGACGTGCAGAAATATGCTAGGAAGTGAAACATGTTCAGTTTGCAGGAATGAAAATTATTAATTATTAGTTACATTTCAAGAACATAATTTTAAATTAAGTTAAACATTTTCATTATAAAAGTTAAAATCCATATCTTGCCATCTCTTGTTCAGACCCAAGCAAAAACCAAAAATATCTTACAATCTTCATTAGGTACTTACCAAGTAAAAAGACATCTCCAGAAAGTATGATCCAAATCTTTTGATGCTTGCATACAAAAACACACTGTAGATGGCCTAAAGTGTCTCTTTAGGTCGTTTATAAGAAATTTTGTACTTTTCGGTAGGCCTTGTTGTCTTGGATTGAAGCCCTGTTTTGTATAGCTTGTTTGGATTTGGATTGCTTCTCTTGTTGGACTTTGGTTTTAGATGCCCCTCCTACATTCTTGTTTGTTTTGTTAACGAAAGTTGGTTTTCAATAATTTTTTCTAATATATTAATTTATCAGCTTTGTTTTCCCTGGTGGATTGTACATATGAAGACAGTGGATGCTTGTTGTGGCTAATTTTGTGTAGATACATTTTTATTTTCAAGTCCTTTTTTGGTAGTCATATGCTTTTTTTTTTCCTTATATGTCAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGGTAAGACTATCTTCAATATCTTCACTTTTGGTTGACTTGATGCCTGATGCCTTACACCTCCTTGTTGCAGAATGCGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGGTTAGTTTCCCTTTTTCTCTCTTTCCCTTTTTTATTTGCCTTCCTTACATACATTTTCCTTGTCTAGAATCCCCTTCATTTTATCTTCTTTTTGAATAAATAAATCATTAAAAGTGCGAGTACTGTCTTTTGATTTGTATGCATACATATTTGTATATGTTTTGAATTGAAAAGCATGTCCTGGAAAATGATCATATTTTCAGGAAAAATTTGTCTCATATTTGTATCATATTTTCTGTTGACAGGAGGAGATGAGAGCACCTCCAAAGAGAGTTACGAGGATATTTGTAGCAAGGATTTCACAATCTGTGACTGAGGCTGCCTTCCGCAGGTAGTTTGGTGTGATTTTGTGCCAGATTCTTGTGCACAATCAATATATATCAGACATTAGTTGAACACGATGGCTACATGTTGGACACTTGTTAGGCACATGTTAAATCCTTGTTAAGCATAATAAATAGGTCTTATTTCACTTGATGGGGGCCGTTCCTTTTGTGGATTCGGTTTTCTTATATGCCTTTTTATTCTTTCATTTTCTCTCAATGAAAGCTTGATTCTTTATTAAAACAAACGTTCTTAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAATAGTAATATAGGACAAAACAATGTACTGAGTTAATACATCAAAATCTTTTTTCCAAGCATACACATAGGCTTACTGACTTCAGATTTGCTGATGGTATACAATATTTATTTCAAAAAGTGTATATTTTAATTAGTGTATTCTTGTCACGTTTGGTCCTGAACTTTTTAGAAAATTCCGTCTTACTGTGTCCATGTTATGTTGTGTGCGTCTCTCCTGTCCATGCTAGAAATTTGATTGGGATTTATCGGTGAAGGCTGAAGAGGAATTGGGAAGAGAACAGGCAACAAAGCTGGAAGTAGAAAAAAAGATTGAATCTGGCCTAAAGAATTCAGGCTATAGATCATTTAAGGAAGTCTGTGGAGAACTGAGAAAGTACAAACCTCTTAATGGAACTTTGTCGCCAGAAACTTTTTGAGCTTGAAATCTGACGTGGAATTATCAGTGAATAGGAGGTAAAGACTAATTTAGAAGAGGACGGGAAAAAAGATGAAAGAAGAAAAATATTGAATCCCCACCAAGAGTATGCAGGTTATAGAACGTCGAAGGAAGTTGTGGAGGCATGAGAGAAATTGAGAACTTCTCAATGAAACTTCTAGCAACTTGAGAGAGAAAGAACTTTGAGGTGGCAGTTGAATGACTATTTGTTAATTTTCTATTCACATCATTACATGTGGGAATGACAGAATGATAATCCTCCGATAAAGTCTAAGGAATGTATGCGTGAGGAAAGAGTGAGGATTGATTTTTTAATTAGTTAGTTAAAGGGGGATGCATCGATGTGTTACGAATTTGTGGGGCTGACATAATAGGAAAGAGGGAGTACTCAAGGGAAAGAAGGGAGCTGGGAGAGGTACGCTTGCTTGGTCGGCAAGTTGGGTGTACTTTGGAGGGAGTTTGCTTGATTGTGTAACATATTGATAAATAAATCTAGCTCCCATGCTTGTATAGCTTATCAAGTATCGAGCAAGAAGCTACACTTTATGGCTTATGTCTTCCCGTCCTCTGACTCTTCCTCCTTGCTGTCCTTGAGTTTTTTCCGCAATTTCTCTAAAAGAGAGGCTTTGGATGTTGTGTGCCTTCTTTCGATTCCTTAGGGGCGATATGTTCTTCGCGGGGGGAGGGACACTAGGTTCTAGTCCCTGGATCCATGTAGGGTCTTCTCTTGTAGCTCTTTCTATTGGTTCAGTCTGGCCTGTTCTCCCTCTTTCTGTGTTTGCTTTCTCCCGGTCTGGAAAGTGCAAATCCCTAAGAGGGTAAAATATTTGTGTGGCAGATTTTACATGAGAGAATCAACACTTTGGACCTGTTTCTATGGTGGTGCATTCTATGTAGGTGTCAGACTGAGTATTTGTATCATCTGTTGTGGGTTGCTCGTTTGTCCGAATTTTTTGGGCTCGTTATTTAGATTCTTATAATTTATGTTGGGTTTGACAGAGGAGGTTCTCCTGGGCTTACTTGTTCGTGAGAAGGACACTGTTTTTTGGCATGCCAGTTTCTCTTGCCATGCCATGGGGGTTTGGCTGGAGAGGAATTGTAGACTTTTTAGAGAGGTGTGGGTGTCGGTCACTTGGCCTTTTTGTAATTATGATCTTGGTTTGATTTTGTTGGATTGAAGTCCCTTTGCATAGTTTATGAGACGTTCTTTTGTGGGTCTTATTTTATCTATACCCATATATTTTATTTTTATTTTCTCAAAGAAAGTGCGGTTTCTTCTACAAAAAATAAATAAATCCATCTCATATCACAAAATTTTGTGTGGCCTTTCTGTTTCAAATGGGGATGTTGCAGGGACAAACATTTTAAAATTTAATTTGGGGATGAACCGTGCTTGCATCTGCCCCTCAAATGTGTCTCAAGTTATTACAATTATTCTATTGATCTTTAATTAACCTTTTCCATTGACAGACGAATAGGAAGTTTCATATTTTCATTAAATGAATTATTTAAACTAATAAATAATAAAATTAATTTTATTGCCTAGAAAAAGTAGGTACCTGCAAGGGAACCTGTTCCTTCAGGGTTTTTAGACATCTCTTAAGAGTCAGAGTCTGTTGACTCAATCCACAATGACTTTGGTAAAGCCTTCAAGCTATATACCCAAATGCAACTTTGTAAGAATTTCATAATCTGATGGTTATCGGAGAGAAGATTGTTAGTATCCTTCGGATGGCACTAAGGCCTTTTAAGAATCCACTAAGACACTATTCAAGCATCTCGTAGAAGAGTTGCAACATTTGTCTTAAGAATTTGATTCATGGTTTTTATTTATGACTTGATGACCTTTTTTTTGTTATTTGGTTTACAAATTCTTGATGGAAATGAACTTCATGTTTGTTGCAGTCATTTTGAGAAATATGGAGAAATAACAGATCTTTACATGCCGAAGGTACGTTTTCCTTTCACTAAACTAGGAAATTAGTTCTGTGGATTCTCTATTCCTATTTTCACTTATCAGGTGTACATGTACTACGTGAATTGGAAAATATGGGTCACCCATGTTTTTGTGCAGTGTATATTAACATCTTTTAACTTTTGTTAATTATTCAGGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAATTCAGGTTGGATCATCTTTTTATATTGATATAAGATATGATTGCAGAGTTCAAGTTGGCAACTTTTGGTTTGTTTCTTCAATTTCTGAAAATATCCGCCCAAATACGGATCCTTTTAATTGTTTACTAGTGCAGTAGTTGAGTTTTTCTACACTGTTCAAAGATTTCCGGATACATAAGTACAAAGATTGGTTTATGGGAAAACATTTTCTCTCTGCTACCACTCTCAAACAACTCACTCTCTTTCATTTTTCAATTTCATCTCCTTCTTCACTCTTCTTTCCACTGCTTTTTTCTATAACTATTCACTTACTTCTTGTTTTCCTTTCATTTTTTTCTTGAAACTCTTTCTTTTTTTTTTCTCCAATTTCAATTGATTAGAAAATACATCTTCAGAATTCAAAGGTACAAAATGATTTTTTTACCATCTTTCCACAATCTAGCTTGAATAAGGCCGAACTCTTCAAAGAGCAAGCCAGTTTAAGTGAATATAATTCTACACAGAGCAAGCCACTTCTAAATTGAGTCATCCCATAATTGAACTCTTCAAAGAGCAAGCCTGTTTAAGTGAACTTAACCTAAGCTCCATGGTAACTTAAATCTTTTACACATTGACCTTGCACATGAAATTGAGTTTGAATCTAGACTAACGATTTTGAAGGTAAAGAATGAATGTTTCTTGTTTTGGATCAAAACTTGTGGAACACCATGGTCACTATCATTTGCTCAGTAGAGGAGGGGGTGGGAAGGGACAAGCAGTGGGGGAAGAGGAGAGGGACATTTAAAACTGTTCATGGTTCTTTTTCTTTCCTCTCGCCGACTAAGTGTGCTGTCCTTAAGAAAGTTCCAGAGAGGCTTTTTTATCCTCCTGCAGTGTACCTTGGTTTTCCTTCTAATTTTGTTTTATTGACAATCTTCATTGTAATGTTTTCACATTAATATAAAAGTTCAACCATGCTATTTCGTGGTTGCCGATTTCCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAACTAGGAGGTTCTGCAGTGGTTGTTGACAGAGCGACCCCCAAGGCAAGATTTTGCTGTTATCTTTATAACACCATATTTACCTTTTGATGGATCTTTTTTTTTCTTTTTTTTTTGAAGACCGAAGGATTCTTTTTAGTTTGTCATGATTTTGTTCGTCTAATTGAGATCAATATACTATTTTTCCAGGATGATGATTTCAGACCCATAGGGAAAATGCCGCGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGTATGTATCTCTGATAGTATCCTTTTTTATGTGATGCTTGGTCTTGGTGAATATTGTTATGATGATTCCCCATTTCATTGGATCAGGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTCGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGTAAATTAGATTTAGTTAATGCTCCACTTTTTATGAGTGACTGAATTGAGATAGCATAACGGTTCAGTTGTTACTGACGAATGTAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCACGAGATTTGTGGACAACAGGTATTCTACTGCATGTCACTTTCCTCACTAGAAGGGCATTGCCAGCGACTGTTCTTTTCTGCCTTTTGCGAGTAATGGTTACTAGTTATTAGTTATATGATTATTACGCAAGCTTCAATCTTGGGTTATGAATCTTATCTCACAATTGGAATCTGCAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTGTGATGAGTAGCGCGGCAGAATCTTTTGGGAGCTATGGTGGACCTATGAGGACTTATGGAAGGATGTATGGAAGCCTAGACTTTGATGATGTAAGTGGCTCTGTTTCTATTTGACTTATATTCAAGTTGGTTAAAATTTAGGTAGTGATTGATAGGTTGTCCACCACATTTAGCGAGCTTTACATTTACTGGTGCCTCTCAGACCCTCCCAAGGGCCCTACAATTAGGATTATAAACATTTTGATTAAAGATTCTTTAGAAATTATTTGAAGGTTTGGTTTCTGAACTTTGAAAGTGTTTTATGATAAGCATTTTTTCGCAAAGTACTTTTGAGTGCTTTTGACGAGTCAAAAGTCAAAAGCATTTAAAAAGGTTACTTCCAACATGATTTGTTTTTTCTTTAAAGCTTTTTTAAAGATTAATGAGTTTATATTGTGCAGTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCGTACTGATGAGTGACAAACCAGCATTGAATTAGTAGTGATGGCTGATGGCTTGATAAATCAACGGCATGAATTGCCATATTTATGGAGAGTCGATATCTTTCAATGTCTGATTATTTGGTTTCTTTTGGTTTATTGTTTTTAACTGTCTCAACACCATTCCTTAGCTGAAACATGGATCAATTGGGGTCGTCGTGGTGTGGGATCGGGATCGGGATCAGGAGGGTATGTCGGCTGTATGAATGTTTGGTTAGTAGTTCTTAGTGAGTTATATTCTTCTCTAACTCTACTTTAAGAATATTCATTTTATAACATCTCTAGGATGGTTTGGTTATCATCGAACAATTGATCGACTACTGAACGCTGGATGGCCTTTTTCTAGTTGTGTTCTTTTTCTTTGAATCAGTCCTACAATGCTTTCAGATCCTTCCAATTTGACTAAATCCATGGCCAAATAAGAGCACTCCCTCAT

mRNA sequence

TATTTTAGTTGAAACAAATATATTAAGATTTGAAGTTATATGAATCAAATTGGGACCAAACTAAATTAGGGAATAAATAAGGCTTAAAAATATGTTATTAAAATAAAATAAATAATAAAAAGAAACAGGAGAGGAGGGAGAGAGATGAGATCTGCTCTAGGTGTTTCTTGAATTCCCAGAAAATCTGATTGAAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGTGGGTCTTAGAGCGAGCGAGGAAGAACAGGAGGAGAGTGAGATATTCTTTTTTCCCCTTTAGGGTTCAATTTCATTGCGTTAACTGCCCCAATTCATCATGGATCGGAAGCTTGTGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGAATGCGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGGAAAGAGGGAGTACTCAAGGGAAAGAAGGGAGCTGGGAGAGTCATTTTGAGAAATATGGAGAAATAACAGATCTTTACATGCCGAAGGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAATTCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAACTAGGAGGTTCTGCAGTGGATGATGATTTCAGACCCATAGGGAAAATGCCGCGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTCGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCACGAGATTTGTGGACAACAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCGTACTGATGAGTGACAAACCAGCATTGAATTAGTAGTGATGGCTGATGGCTTGATAAATCAACGGCATGAATTGCCATATTTATGGAGAGTCGATATCTTTCAATGTCTGATTATTTGGTTTCTTTTGGTTTATTGTTTTTAACTGTCTCAACACCATTCCTTAGCTGAAACATGGATCAATTGGGGTCGTCGTGGTGTGGGATCGGGATCGGGATCAGGAGGGTATGTCGGCTGTATGAATGTTTGGTTAGTAGTTCTTAGTGAGTTATATTCTTCTCTAACTCTACTTTAAGAATATTCATTTTATAACATCTCTAGGATGGTTTGGTTATCATCGAACAATTGATCGACTACTGAACGCTGGATGGCCTTTTTCTAGTTGTGTTCTTTTTCTTTGAATCAGTCCTACAATGCTTTCAGATCCTTCCAATTTGACTAAATCCATGGCCAAATAAGAGCACTCCCTCAT

Coding sequence (CDS)

ATGGATCGGAAGCTTGTGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGAATGCGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGGAAAGAGGGAGTACTCAAGGGAAAGAAGGGAGCTGGGAGAGTCATTTTGAGAAATATGGAGAAATAACAGATCTTTACATGCCGAAGGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAATTCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAACTAGGAGGTTCTGCAGTGGATGATGATTTCAGACCCATAGGGAAAATGCCGCGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTCGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCACGAGATTTGTGGACAACAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCGTACTGA

Protein sequence

MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSNEHFLGNRMLEVKVATPKERGSTQGKEGSWESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAVDDDFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFWGYGVGGGRPSRADWRYRPY

Homology

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BLAST of Cp4.1LG05g11040 vs. ExPASy Swiss-Prot
Match: O94432 (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.1e-19
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 2   DRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL 61
           D K+ + G+ W+   + LRDY  +FGE+ DC VM++ +TGRSRGFG++TF   +     +
Sbjct: 162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221

Query: 62  SNEHFLGNRMLEVKVATPKERGSTQGK-----------EGSWESHFEKYGEITDLYMPKD 121
           S EH L  ++++ K A P+E      K           E  + + F ++G + D  +  D
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD 281

Query: 122 QGSKIHRGIGFITFAN 127
           + +   RG GF+T+ N
Sbjct: 282 KDTGRPRGFGFVTYEN 297

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BLAST of Cp4.1LG05g11040 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-18
Identity = 65/214 (30.37%), Postives = 101/214 (47.20%), Query Frame = 0


Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL V GI W+ D + LR++ + +GE+   IVM+++ TGR RGFG+V F+        L  
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 64  EHFLGNRMLEVKVATPKERGSTQGKEGS-------------------------------W 123
           +H +  R ++VK A  +E     G+ G+                               +
Sbjct: 67  KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126

Query: 124 ESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAET-HELG 183
             +FE YG +TD+ +  DQ +   RG GF++F +           D+V++++ +T H+L 
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE----------DAVDSVLHKTFHDLS 186

Query: 184 GSAVD-DDFRPIGKMPRGGGGGGGGGGGGGYGAY 185
           G  V+     P    P GGG   GGGG GGY  Y
Sbjct: 187 GKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGY 210

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy Swiss-Prot
Match: P04256 (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus OX=10116 GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-15
Identity = 62/200 (31.00%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 3   RKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL- 62
           RKL + G+ ++   E LR +  ++G L DC+VM++ +T RSRGFG+VT+AT E+   A+ 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 63  SNEHFLGNRMLEVKVATPKERGSTQG-------------KEGSWESH----FEKYGEITD 122
           +  H +  R++E K A  +E     G             KE + E H    FE+YG+I  
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 123 LYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAVDDDFRPIGK 182
           + +  D+GS   RG  F+TF +  +   +  ++     +     E+  +    +      
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDS--VDKIVIQKYHTVNGHNCEVRKALCKQEMASASS 193

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy Swiss-Prot
Match: P09867 (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus OX=9913 GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-15
Identity = 62/200 (31.00%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 3   RKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL- 62
           RKL + G+ ++   E LR +  ++G L DC+VM++ +T RSRGFG+VT+AT E+   A+ 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 63  SNEHFLGNRMLEVKVATPKERGSTQG-------------KEGSWESH----FEKYGEITD 122
           +  H +  R++E K A  +E     G             KE + E H    FE+YG+I  
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 123 LYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAVDDDFRPIGK 182
           + +  D+GS   RG  F+TF +  +   +  ++     +     E+  +    +      
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDS--VDKIVIQKYHTVNGHNCEVRKALSKQEMASASS 193

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy Swiss-Prot
Match: P09651 (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-15
Identity = 62/200 (31.00%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 3   RKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL- 62
           RKL + G+ ++   E LR +  ++G L DC+VM++ +T RSRGFG+VT+AT E+   A+ 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 63  SNEHFLGNRMLEVKVATPKERGSTQG-------------KEGSWESH----FEKYGEITD 122
           +  H +  R++E K A  +E     G             KE + E H    FE+YG+I  
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 123 LYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAVDDDFRPIGK 182
           + +  D+GS   RG  F+TF +  +   +  ++     +     E+  +    +      
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDS--VDKIVIQKYHTVNGHNCEVRKALSKQEMASASS 193

[Close]

BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: XP_023534162.1 (RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 595 bits (1533), Expect = 1.47e-212
Identity = 311/383 (81.20%), Postives = 313/383 (81.72%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFANS          DSVENLMAETHELGGSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFANS----------DSVENLMAETHELGGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR
Sbjct: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF--------------------------- 330
           VSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF                           
Sbjct: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMSSAAESFGSYGGPMRTYGRMYGSLD 360

[Close]

BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: XP_022947989.1 (RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 586 bits (1511), Expect = 3.55e-209
Identity = 309/385 (80.26%), Postives = 312/385 (81.04%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKN 
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNV 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHELGGSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELGGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGG--YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE 240
           DFRPIGKMPRGGGGGGGGGGGGG  YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE
Sbjct: 181 DFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE 240

Query: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300
           FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA
Sbjct: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300

Query: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF------------------------- 330
           DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF                         
Sbjct: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGS 360

[Close]

BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: KAG6605269.1 (RNA-binding protein Musashi-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 578 bits (1489), Expect = 7.96e-206
Identity = 308/387 (79.59%), Postives = 311/387 (80.36%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHELGGSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELGGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGG----YGAYNAYISAATRYAALGAPTLYDHPVSVYGGR 240
           DFRPIGKMPRGGGGGGGGGGGGG    YGAYNAYISAATRYAALGAPTLYDHPVSVYG  
Sbjct: 181 DFRPIGKMPRGGGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYG-- 240

Query: 241 REFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDG 300
           REFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDG
Sbjct: 241 REFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDG 300

Query: 301 VADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF----------------------- 330
           VADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF                       
Sbjct: 301 VADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMY 360

[Close]

BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: XP_022947990.1 (RNA-binding protein Musashi homolog 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 577 bits (1487), Expect = 1.49e-205
Identity = 307/385 (79.74%), Postives = 310/385 (80.52%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKN 
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNV 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHELGGSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELGGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGG--YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE 240
           DFRPIGKMPRGGGGGGGGGGGGG  YGAYNAYISAATRYAALGAPTLYDHPVSVYG  RE
Sbjct: 181 DFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYG--RE 240

Query: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300
           FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA
Sbjct: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300

Query: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF------------------------- 330
           DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF                         
Sbjct: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGS 360

[Close]

BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: XP_023007075.1 (RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 573 bits (1477), Expect = 4.62e-204
Identity = 304/383 (79.37%), Postives = 307/383 (80.16%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHEL GSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELEGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMPRGG GGGGGGGG  YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR
Sbjct: 181 DFRPIGKMPRGGRGGGGGGGG--YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF--------------------------- 330
           VSRRSHEICGQQVAIDSATPLDDAGAAG SG F                           
Sbjct: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGASGTFVMNSAAESFGSYGGPMRTYGRMYGSLD 360

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy TrEMBL
Match: A0A6J1G8I8 (RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451705 PE=4 SV=1)

HSP 1 Score: 586 bits (1511), Expect = 1.72e-209
Identity = 309/385 (80.26%), Postives = 312/385 (81.04%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKN 
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNV 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHELGGSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELGGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGG--YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE 240
           DFRPIGKMPRGGGGGGGGGGGGG  YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE
Sbjct: 181 DFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE 240

Query: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300
           FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA
Sbjct: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300

Query: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF------------------------- 330
           DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF                         
Sbjct: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGS 360

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy TrEMBL
Match: A0A6J1G8F8 (RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451705 PE=4 SV=1)

HSP 1 Score: 577 bits (1487), Expect = 7.22e-206
Identity = 307/385 (79.74%), Postives = 310/385 (80.52%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKN 
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNV 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHELGGSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELGGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGG--YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRRE 240
           DFRPIGKMPRGGGGGGGGGGGGG  YGAYNAYISAATRYAALGAPTLYDHPVSVYG  RE
Sbjct: 181 DFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYG--RE 240

Query: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300
           FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA
Sbjct: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300

Query: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF------------------------- 330
           DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF                         
Sbjct: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGS 360

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy TrEMBL
Match: A0A6J1L1Z7 (RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499677 PE=4 SV=1)

HSP 1 Score: 573 bits (1477), Expect = 2.24e-204
Identity = 304/383 (79.37%), Postives = 307/383 (80.16%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHEL GSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELEGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMPRGG GGGGGGGG  YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR
Sbjct: 181 DFRPIGKMPRGGRGGGGGGGG--YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF--------------------------- 330
           VSRRSHEICGQQVAIDSATPLDDAGAAG SG F                           
Sbjct: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGASGTFVMNSAAESFGSYGGPMRTYGRMYGSLD 360

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy TrEMBL
Match: A0A6J1KZI2 (RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499677 PE=4 SV=1)

HSP 1 Score: 564 bits (1453), Expect = 9.40e-201
Identity = 302/383 (78.85%), Postives = 305/383 (79.63%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LSNEHFLGNRMLEVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSNEHFLGNRMLEVKVATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVENLMAETHEL GSAV        DD
Sbjct: 121 YMPKDQGSKIHRGIGFITFASS----------DSVENLMAETHELEGSAVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMPRGG GGGGGGGG  YGAYNAYISAATRYAALGAPTLYDHPVSVYG  REFR
Sbjct: 181 DFRPIGKMPRGGRGGGGGGGG--YGAYNAYISAATRYAALGAPTLYDHPVSVYG--REFR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGPSGPF--------------------------- 330
           VSRRSHEICGQQVAIDSATPLDDAGAAG SG F                           
Sbjct: 301 VSRRSHEICGQQVAIDSATPLDDAGAAGASGTFVMNSAAESFGSYGGPMRTYGRMYGSLD 360

[Close]

BLAST of Cp4.1LG05g11040 vs. ExPASy TrEMBL
Match: A0A6J1EWL0 (heterogeneous nuclear ribonucleoprotein D0-like OS=Cucurbita moschata OX=3662 GN=LOC111438656 PE=4 SV=1)

HSP 1 Score: 553 bits (1425), Expect = 7.16e-195
Identity = 292/386 (75.65%), Postives = 305/386 (79.02%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWD+DTE LR+YMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 99  MDRKLVVLGIPWDVDTEALREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 158

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LS+EHFLGNRM+EVK+ATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 159 LSSEHFLGNRMMEVKIATPKEEMRAPPKRVTRIFVARISQSVTEAAFRSHFEKYGEITDL 218

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSKIHRGIGFITFA+S          DSVE+LMAETHELGGS V        DD
Sbjct: 219 YMPKDQGSKIHRGIGFITFASS----------DSVESLMAETHELGGSTVVVDRATPKDD 278

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMP+GGGGGGGGGGGGGYGAY+AYISAATRYAALGAPTLYDHP  VYG RREFR
Sbjct: 279 DFRPIGKMPQGGGGGGGGGGGGGYGAYSAYISAATRYAALGAPTLYDHPGPVYG-RREFR 338

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIF+GRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 339 GMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 398

Query: 301 VSRRSHEICGQQVAIDSATPLDD---AGAAGPSGPF------------------------ 330
           VSRRSHEICGQQVAIDSATPLDD   AGAAG SG F                        
Sbjct: 399 VSRRSHEICGQQVAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYG 458

[Close]

BLAST of Cp4.1LG05g11040 vs. TAIR 10
Match: AT4G36960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 431.8 bits (1109), Expect = 5.0e-121
Identity = 238/389 (61.18%), Postives = 270/389 (69.41%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWDID++GL+DYMSKFG+LEDCIVMK+RSTGRSRGFGYVTFA+ EDAKNA
Sbjct: 1   MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGK---------------EGSWESHFEKYGEITDL 120
           L  EHFLGNR+LEVKVATPKE      K               E  + SHFE+YGEITDL
Sbjct: 61  LKGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKD  SK HRGIGFITF+++          DSVE+LM +TH+LGG+ V        +D
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSA----------DSVEDLMEDTHDLGGTTVAVDRATPKED 180

Query: 181 DF----RPIGKMPRGGGG-GGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYG- 240
           D      P+ +M R      GG G  GGYGAY+AYISAATRYAALGAPTLYD+P + YG 
Sbjct: 181 DHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGR 240

Query: 241 GRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAE 300
           G    RG+G KIF+GRLPQEAS DDLR YFGRFG I D Y+PKDPKRSGHRGFGFVTFAE
Sbjct: 241 GEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 300

Query: 301 DGVADRVSRRSHEICGQQVAIDSATPLDDAGAA----------------GPSGPF----- 331
           +GVADRV+RRSHEICGQ+VAIDSATPLD+AG +                G  GP      
Sbjct: 301 NGVADRVARRSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGR 360

[Close]

BLAST of Cp4.1LG05g11040 vs. TAIR 10
Match: AT4G36960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 431.8 bits (1109), Expect = 5.0e-121
Identity = 238/389 (61.18%), Postives = 270/389 (69.41%), Query Frame = 0


Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWDID++GL+DYMSKFG+LEDCIVMK+RSTGRSRGFGYVTFA+ EDAKNA
Sbjct: 1   MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGK---------------EGSWESHFEKYGEITDL 120
           L  EHFLGNR+LEVKVATPKE      K               E  + SHFE+YGEITDL
Sbjct: 61  LKGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKD  SK HRGIGFITF+++          DSVE+LM +TH+LGG+ V        +D
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSA----------DSVEDLMEDTHDLGGTTVAVDRATPKED 180

Query: 181 DF----RPIGKMPRGGGG-GGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYG- 240
           D      P+ +M R      GG G  GGYGAY+AYISAATRYAALGAPTLYD+P + YG 
Sbjct: 181 DHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGR 240

Query: 241 GRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAE 300
           G    RG+G KIF+GRLPQEAS DDLR YFGRFG I D Y+PKDPKRSGHRGFGFVTFAE
Sbjct: 241 GEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 300

Query: 301 DGVADRVSRRSHEICGQQVAIDSATPLDDAGAA----------------GPSGPF----- 331
           +GVADRV+RRSHEICGQ+VAIDSATPLD+AG +                G  GP      
Sbjct: 301 NGVADRVARRSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGR 360

[Close]

BLAST of Cp4.1LG05g11040 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 95.9 bits (237), Expect = 6.5e-20
Identity = 76/252 (30.16%), Postives = 114/252 (45.24%), Query Frame = 0


Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL + GI WD D   LR+Y S FGE+    VM+E++TGR RGFG+V F+        L +
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

Query: 64  EHFLGNRMLEVKVATPKERGSTQGKEGS-------------------------------W 123
           +H + NR ++VK A  +E  S  G+ G+                               +
Sbjct: 67  KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEF 126

Query: 124 ESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAET-HELG 183
            ++FE YG ++D  +  DQ ++  RG GF++F +           DSV+ ++ +T H+L 
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSE----------DSVDLVLHKTFHDLN 186

Query: 184 GSAVDDDFRPIGKMPRGG---GGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVS 221
           G  V+   R + K    G   GGG G GG GG+  Y    S  + Y        Y  P +
Sbjct: 187 GKQVEVK-RALPKDANPGIASGGGRGSGGAGGFPGYGG--SGGSGYEGRVDSNRYMQPQN 245

[Close]

BLAST of Cp4.1LG05g11040 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-19
Identity = 65/214 (30.37%), Postives = 101/214 (47.20%), Query Frame = 0


Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL V GI W+ D + LR++ + +GE+   IVM+++ TGR RGFG+V F+        L  
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 64  EHFLGNRMLEVKVATPKERGSTQGKEGS-------------------------------W 123
           +H +  R ++VK A  +E     G+ G+                               +
Sbjct: 67  KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126

Query: 124 ESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAET-HELG 183
             +FE YG +TD+ +  DQ +   RG GF++F +           D+V++++ +T H+L 
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE----------DAVDSVLHKTFHDLS 186

Query: 184 GSAVD-DDFRPIGKMPRGGGGGGGGGGGGGYGAY 185
           G  V+     P    P GGG   GGGG GGY  Y
Sbjct: 187 GKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGY 210

[Close]

BLAST of Cp4.1LG05g11040 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-17
Identity = 63/209 (30.14%), Postives = 105/209 (50.24%), Query Frame = 0


Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL + GI WD + E L++Y S FGE+ + +++K+R+TGR+RGFG+V FA    A+  ++ 
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 64  EHFLGNRMLEVKVATPKE-------------RGSTQG----------------KEGSWES 123
           +H +  R++E K A P++             +GS  G                 E  +++
Sbjct: 67  KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126

Query: 124 HFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAET-HELGGS 183
           +FE++G  TD+ +  D  ++  RG GFIT+ +           ++VE ++ +T HEL G 
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE----------EAVEKVLLKTFHELNGK 186

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g11040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O94432	4.1e-19	33.09	Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain...	[more]
Q8W034	2.0e-18	30.37	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
P04256	2.7e-15	31.00	Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus OX=10116 GN=Hnrn...	[more]
P09867	3.6e-15	31.00	Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus OX=9913 GN=HNRNPA1 PE=1...	[more]
P09651	3.6e-15	31.00	Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE...	[more]

BLAST of Cp4.1LG05g11040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534162.1	1.47e-212	81.20	RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022947989.1	3.55e-209	80.26	RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita moschata]	[more]
KAG6605269.1	7.96e-206	79.59	RNA-binding protein Musashi-like 2, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022947990.1	1.49e-205	79.74	RNA-binding protein Musashi homolog 2-like isoform X2 [Cucurbita moschata]	[more]
XP_023007075.1	4.62e-204	79.37	RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g11040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8I8	1.72e-209	80.26	RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1G8F8	7.22e-206	79.74	RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1L1Z7	2.24e-204	79.37	RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1KZI2	9.40e-201	78.85	RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A6J1EWL0	7.16e-195	75.65	heterogeneous nuclear ribonucleoprotein D0-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cp4.1LG05g11040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36960.1	5.0e-121	61.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G36960.2	5.0e-121	61.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G33410.1	6.5e-20	30.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	1.4e-19	30.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.1	2.3e-17	30.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 222..293 e-value: 1.1E-15 score: 68.2 coord: 4..75 e-value: 8.9E-22 score: 88.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 223..277 e-value: 1.2E-12 score: 47.5 coord: 94..127 e-value: 1.8E-4 score: 21.3 coord: 5..70 e-value: 8.0E-15 score: 54.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 3..79 score: 16.517189
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 221..297 score: 16.005526
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..92 e-value: 1.7E-24 score: 88.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 93..189 e-value: 4.3E-9 score: 38.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 219..301 e-value: 2.8E-20 score: 74.2
None	No IPR available	PANTHER	PTHR48027:SF15	OS01G0945800 PROTEIN	coord: 1..305
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..305
None	No IPR available	CDD	cd12322	RRM2_TDP43	coord: 221..296 e-value: 2.83785E-30 score: 107.738
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 221..322
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g11040.1	Cp4.1LG05g11040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding