Cp4.1LG05g10970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g10970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRoot meristem growth factor 9-like protein
LocationCp4.1LG05: 7300812 .. 7301208 (+)
RNA-Seq ExpressionCp4.1LG05g10970
SyntenyCp4.1LG05g10970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCATGCAAACGCCTCGTCCTCGTCCTCCTCGTCCTCCTCGTTCTTCTACGTTGCTTCTCGAACACAGCTATAGGTATCTTTCTCTATCTAATTAATTCATTACAATAAATTCAAGATCTGTTATTCTTTAAAACAAATCAAGGAGCACTCTTTTTAACACTAAAAATGTCACCATATTGGATTCTTTGTACAAAGTTCGAATCGGGTCGTTTTATTTTTCAATCGAATCGTTGATTTGTTGTTTGCAGAAGCAAGAAGTTTGGGAGTGGCTGAGGTTAAGAAGGATGATCATAGTCTCAAAGTTGATGATGAAGAACATTTTATGAGCACTGATGATTTGGTGGCTATGGATTATACTCAGGCTTCCAAGAAGCCTCCAATCCACAACTGA

mRNA sequence

ATGGCTCCATGCAAACGCCTCGTCCTCGTCCTCCTCGTCCTCCTCGTTCTTCTACGTTGCTTCTCGAACACAGCTATAGAAGCAAGAAGTTTGGGAGTGGCTGAGGTTAAGAAGGATGATCATAGTCTCAAAGTTGATGATGAAGAACATTTTATGAGCACTGATGATTTGGTGGCTATGGATTATACTCAGGCTTCCAAGAAGCCTCCAATCCACAACTGA

Coding sequence (CDS)

ATGGCTCCATGCAAACGCCTCGTCCTCGTCCTCCTCGTCCTCCTCGTTCTTCTACGTTGCTTCTCGAACACAGCTATAGAAGCAAGAAGTTTGGGAGTGGCTGAGGTTAAGAAGGATGATCATAGTCTCAAAGTTGATGATGAAGAACATTTTATGAGCACTGATGATTTGGTGGCTATGGATTATACTCAGGCTTCCAAGAAGCCTCCAATCCACAACTGA

Protein sequence

MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKDDHSLKVDDEEHFMSTDDLVAMDYTQASKKPPIHN
Homology
BLAST of Cp4.1LG05g10970 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121 bits (304), Expect = 3.51e-34
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVA--EVKKDDHSLKVD------DEEHFM 60
          MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGV   ++KKDDHSLKVD      DEEHFM
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKVDGDLNVDDEEHFM 60

Query: 61 STDDLVAMDYTQASKKPPIHN 73
          ST DLVAMDYTQASKKPPIHN
Sbjct: 61 STVDLVAMDYTQASKKPPIHN 81

BLAST of Cp4.1LG05g10970 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 3.90e-19
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKD-----------DHSLKV---- 60
          M PCKR++++ L++L+LL CFSNTAI ARS+GVAE+K +           D   KV    
Sbjct: 3  MLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHNNN 62

Query: 61 DDEEHFMSTDDLVAMDYTQASKKPPIHN 73
          D+E +F STDDL AMDYT ASKKPPIHN
Sbjct: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Cp4.1LG05g10970 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 7.45e-19
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKDDHSLKV-------------DD 60
          M PCKR++ + +++LVLL CFSN AI ARS+GVAE+K +  + KV             D+
Sbjct: 3  MLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNNDE 62

Query: 61 EEHFMSTDDLVAMDYTQASKKPPIHN 73
          E +F STDDL AMDYT ASKKPPIHN
Sbjct: 63 EHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Cp4.1LG05g10970 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 1.55e-18
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKDDHSLK------VDDEEHFMST 60
          MA  KR   VL+++LVLL  FSN  I  RSLGV ++KKDDH LK      V +EEHF ST
Sbjct: 1  MAMNKR---VLVLVLVLLCSFSNKVIATRSLGVPQIKKDDHKLKGNDDLAVHEEEHFSST 60

Query: 61 DDLVAMDYTQASKKPPIHN 73
          DDL AMDYT ASKKPPIHN
Sbjct: 61 DDLGAMDYTPASKKPPIHN 76

BLAST of Cp4.1LG05g10970 vs. NCBI nr
Match: KAB2597277.1 (hypothetical protein D8674_000197 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 54.7 bits (130), Expect = 9.27e-08
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 3  PCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKDDHSLKVDDEEHFMSTD---DLVA 62
          PCK LV+V   LL    CF +   + RSLGV   +  D   K +D++  +  D   DL+A
Sbjct: 5  PCKNLVVVAFFLL----CFISITAQGRSLGVVSKRAGDAYQKNEDDQAVVQQDESNDLLA 64

Query: 63 MDYTQASKKPPIHN 73
          MDYT A KKPPIHN
Sbjct: 65 MDYTPARKKPPIHN 74

BLAST of Cp4.1LG05g10970 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.89e-19
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKD-----------DHSLKV---- 60
          M PCKR++++ L++L+LL CFSNTAI ARS+GVAE+K +           D   KV    
Sbjct: 3  MLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHNNN 62

Query: 61 DDEEHFMSTDDLVAMDYTQASKKPPIHN 73
          D+E +F STDDL AMDYT ASKKPPIHN
Sbjct: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Cp4.1LG05g10970 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.61e-19
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKDDHSLKV-------------DD 60
          M PCKR++ + +++LVLL CFSN AI ARS+GVAE+K +  + KV             D+
Sbjct: 3  MLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNNDE 62

Query: 61 EEHFMSTDDLVAMDYTQASKKPPIHN 73
          E +F STDDL AMDYT ASKKPPIHN
Sbjct: 63 EHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Cp4.1LG05g10970 vs. ExPASy TrEMBL
Match: A0A5N5F2S8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_000197 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.49e-08
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 3  PCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKDDHSLKVDDEEHFMSTD---DLVA 62
          PCK LV+V   LL    CF +   + RSLGV   +  D   K +D++  +  D   DL+A
Sbjct: 5  PCKNLVVVAFFLL----CFISITAQGRSLGVVSKRAGDAYQKNEDDQAVVQQDESNDLLA 64

Query: 63 MDYTQASKKPPIHN 73
          MDYT A KKPPIHN
Sbjct: 65 MDYTPARKKPPIHN 74

BLAST of Cp4.1LG05g10970 vs. ExPASy TrEMBL
Match: A0A314YKW1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_08970 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.62e-07
Identity = 39/84 (46.43%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 3  PCKRLVLVLLVLLVLLRCFSNTAIEARSLGVAEVKKDD-----HSL------KVDDEEHF 62
          P K L+LV  +LL    CF +   E RSLGV     DD     H L      K +D E  
Sbjct: 5  PFKHLLLVAFILL----CFISITAEGRSLGVVSKSADDGHQKSHDLHDPFKQKEEDHEGL 64

Query: 63 MS--TDDLVAMDYTQASKKPPIHN 73
          +S  ++DL+AMDYT ASKKPPIHN
Sbjct: 65 LSDESNDLLAMDYTPASKKPPIHN 84

BLAST of Cp4.1LG05g10970 vs. ExPASy TrEMBL
Match: A0A2P5BTZ6 (Root meristem growth factor OS=Trema orientale OX=63057 GN=TorRG33x02_308880 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.81e-07
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSL---GVAEVKKDDHSLKVDDEEHFMSTDDL 60
          M PCKRLV+  LVL      F +T   AR L   G    K +D  LK + E   + +D+L
Sbjct: 3  MLPCKRLVIATLVLFF----FVSTTARARILQEAGDVAKKSNDDQLKPNQERELIDSDEL 62

Query: 61 VAMDYTQASKKPPIHN 73
          V+MDY+ A K PPIHN
Sbjct: 63 VSMDYSPAGKNPPIHN 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605281.13.51e-3485.19hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0045905.13.90e-1955.68Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684... [more]
KGN62102.17.45e-1954.65hypothetical protein Csa_006036 [Cucumis sativus][more]
KAG6571377.11.55e-1863.29hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB2597277.19.27e-0845.95hypothetical protein D8674_000197 [Pyrus ussuriensis x Pyrus communis][more]
Match NameE-valueIdentityDescription
A0A5A7TWX61.89e-1955.68Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0LMV63.61e-1954.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1[more]
A0A5N5F2S84.49e-0845.95Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A314YKW11.62e-0746.43Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_089... [more]
A0A2P5BTZ61.81e-0744.74Root meristem growth factor OS=Trema orientale OX=63057 GN=TorRG33x02_308880 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33743:SF16ROOT MERISTEM GROWTH FACTOR 9coord: 1..73
IPR039337Protein GOLVEN 2PANTHERPTHR33743FAMILY NOT NAMEDcoord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g10970.1Cp4.1LG05g10970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity