Cp4.1LG05g10080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g10080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NAD(P)H-quinone oxidoreductase subunit N
Location	Cp4.1LG05: 6624110 .. 6626217 (+)
RNA-Seq Expression	Cp4.1LG05g10080
Synteny	Cp4.1LG05g10080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAAGAACAGCGAAAGCGGACGGGGAGCTTTATCTCCATTTTCATCCACACAAACCACGGCCATGGCATCTGTGCATAGCTTCAACCTTCTCTTAATTCCTCAGCCATGGCTTCCTTTCGTTCTCCTATCCTCATTGTCCTTCTTCATTCCAATTCCTTTTCGCTAATAAACCCACACCATGCCTCCTCTAGCCTCCATGCTTAATGGAGCTGCACTAGCGCCGTCGCTCCATCTTCATCCAAGGCGGCTCCGTCCACCGACCTCGGCTGCGACGCTGCAGGTGATCGGGCGGAGGACCAGATTCGGTACCGGCAAAGGCAGGGCAGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTGAAATTCGACCTAGGTCAGTGGCTATCGGATGTGGAGGAACACAAAGCCCTAGCGATTTACTCGCCGCACGAAGGCGGCTACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCACGCGGCCTCGGTGATCCTGAGACCACTCTCACCAAGATTCACCCCGTTTGCCCTGTCCGTTCAATCGAATCCCTACGGCTAATTCAATTTTTTTCCCCCTAGGGTTTGTTCGATTGATCTTACTTCGGCTTCGAATTGCAGGCTCATTTAGGGAAGCAGCCAATCGCTCGGTGGTATTTCCCACCGGAAGTCGATTACAGGCTCGAGGCTCTGCCGCCGAACGCCAAGGGACTGGTGGTGTGGATAATCGAGGCTAAGGTGAGATTCTTAAATCTGCCATTAACGATTTCAGAATCAATTACGGAATTGAAAACACTGTTCAGGTTCTGTCGAAGGCGGAGTTGCAGTTCCTTGCTCTGCTGCCGACTCTCCGGCCAAAAGTCCGAGTCATCGCGGAGTGCGGGAACTGGTAGCTTTCTTCTCTGCTATCTCCATTTTCAACCAAACATATATATATATATATAGATATAAGCTGAAAGATTGAGTTTGGCGTTGCTGCAGGAGGAAGTTCATGTGGAAGCCGCTCAAGGAGATCGCAGGAGGAGCTTAAGAACACCATAAACAAGAATAATACAGCTTCTTCCTTTTTTCTTCCTCTTTTTTTCAATGAATTAATTCAATTTCTTGGTAAAAACGACGAAGAAGATGATGGTGTTTTACCATTTAGGGTTAAATTATGATTATTATGCAAATATTATTACTTCATAAAATGATTTATTACATATTTTAAGATCTTTAAACTCACCGATACACCACGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGTCAACAACGGCTGAACTAACTAATTAAATTATGTACTATACTTGCAGGATTCAGGATTCAAATCATAATCGAGGTACATGTCAATTCTTGATCGTTGATCATACTCATTTACCACATTAGAATAATCAAAAACTGCCTTCCAACTACAAATGGTTTATCAAATCCTCACACCATCCAAATTATAATTGATTAAAGATGAAGAAAATCACACACAGCTTACAGTTTTGCTTCTGCTTCTGTTTTTGTCACTGGCGGCAAGAAAATCTCCCACCATCCATATTCATACTTGGGGTAGGGAGCCTCCCATTTTTCGGGCTTCTCAAACTCGATGTTGGTCGGGTTAGAAGCCAATGCTTGTTCTAAGCTATCGGCTTCGTAGCTTTCGGCTAAAACTCGGTCCAGTCTCAGCTTCATGAACCTGCACATATCAACAAAAGAAAGGACTAAAATGGGTTGTCGAACAAAGACATTGTTGCAGGAGTATTTGAGTTTCGAGCTCCTTTTGTAGTAATTGTAAACATTTAACTTCGCCCACGATATAGGATTTCATATCGAACACGAGGCCTTTTACAATGAGGTTATTAAACATAAATGAGTTTCAGTTGCTGTTGCTAAACAACTTCTCAACAAGGTAAGTTTGCATTACAGCATCTATAGAAACTAGGAATCCAAAAAGCATCTATAGAAACAAGATGGGAGTAAATGTTGTTCTGTCAGCATATGCAAATAACAAAGCACTATAAAATTAAGATGCATT

mRNA sequence

AAAATAAGAACAGCGAAAGCGGACGGGGAGCTTTATCTCCATTTTCATCCACACAAACCACGGCCATGGCATCTGTGCATAGCTTCAACCTTCTCTTAATTCCTCAGCCATGGCTTCCTTTCGTTCTCCTATCCTCATTGTCCTTCTTCATTCCAATTCCTTTTCGCTAATAAACCCACACCATGCCTCCTCTAGCCTCCATGCTTAATGGAGCTGCACTAGCGCCGTCGCTCCATCTTCATCCAAGGCGGCTCCGTCCACCGACCTCGGCTGCGACGCTGCAGGTGATCGGGCGGAGGACCAGATTCGGTACCGGCAAAGGCAGGGCAGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTGAAATTCGACCTAGGTCAGTGGCTATCGGATGTGGAGGAACACAAAGCCCTAGCGATTTACTCGCCGCACGAAGGCGGCTACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCACGCGGCCTCGGTGATCCTGAGACCACTCTCACCAAGATTCACCCCGTTTGCCCTGCTCATTTAGGGAAGCAGCCAATCGCTCGGTGGTATTTCCCACCGGAAGTCGATTACAGGCTCGAGGCTCTGCCGCCGAACGCCAAGGGACTGGTGGTGTGGATAATCGAGGCTAAGGTTCTGTCGAAGGCGGAGTTGCAGTTCCTTGCTCTGCTGCCGACTCTCCGGCCAAAAGTCCGAGTCATCGCGGAGTGCGGGAACTGGAGGAAGTTCATGTGGAAGCCGCTCAAGGAGATCGCAGGAGGAGCTTAAGAACACCATAAACAAGAATAATACAGCTTCTTCCTTTTTTCTTCCTCTTTTTTTCAATGAATTAATTCAATTTCTTGGTAAAAACGACGAAGAAGATGATGGTGTTTTACCATTTAGGGTTAAATTATGATTATTATGCAAATATTATTACTTCATAAAATGATTTATTACATATTTTAAGATCTTTAAACTCACCGATACACCACGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGTCAACAACGGCTGAACTAACTAATTAAATTATGTACTATACTTGCAGGATTCAGGATTCAAATCATAATCGAGGTACATGTCAATTCTTGATCGTTGATCATACTCATTTACCACATTAGAATAATCAAAAACTGCCTTCCAACTACAAATGGTTTATCAAATCCTCACACCATCCAAATTATAATTGATTAAAGATGAAGAAAATCACACACAGCTTACAGTTTTGCTTCTGCTTCTGTTTTTGTCACTGGCGGCAAGAAAATCTCCCACCATCCATATTCATACTTGGGGTAGGGAGCCTCCCATTTTTCGGGCTTCTCAAACTCGATGTTGGTCGGGTTAGAAGCCAATGCTTGTTCTAAGCTATCGGCTTCGTAGCTTTCGGCTAAAACTCGGTCCAGTCTCAGCTTCATGAACCTGCACATATCAACAAAAGAAAGGACTAAAATGGGTTGTCGAACAAAGACATTGTTGCAGGAGTATTTGAGTTTCGAGCTCCTTTTGTAGTAATTGTAAACATTTAACTTCGCCCACGATATAGGATTTCATATCGAACACGAGGCCTTTTACAATGAGGTTATTAAACATAAATGAGTTTCAGTTGCTGTTGCTAAACAACTTCTCAACAAGGTAAGTTTGCATTACAGCATCTATAGAAACTAGGAATCCAAAAAGCATCTATAGAAACAAGATGGGAGTAAATGTTGTTCTGTCAGCATATGCAAATAACAAAGCACTATAAAATTAAGATGCATT

Coding sequence (CDS)

ATGCCTCCTCTAGCCTCCATGCTTAATGGAGCTGCACTAGCGCCGTCGCTCCATCTTCATCCAAGGCGGCTCCGTCCACCGACCTCGGCTGCGACGCTGCAGGTGATCGGGCGGAGGACCAGATTCGGTACCGGCAAAGGCAGGGCAGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTGAAATTCGACCTAGGTCAGTGGCTATCGGATGTGGAGGAACACAAAGCCCTAGCGATTTACTCGCCGCACGAAGGCGGCTACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCACGCGGCCTCGGTGATCCTGAGACCACTCTCACCAAGATTCACCCCGTTTGCCCTGCTCATTTAGGGAAGCAGCCAATCGCTCGGTGGTATTTCCCACCGGAAGTCGATTACAGGCTCGAGGCTCTGCCGCCGAACGCCAAGGGACTGGTGGTGTGGATAATCGAGGCTAAGGTTCTGTCGAAGGCGGAGTTGCAGTTCCTTGCTCTGCTGCCGACTCTCCGGCCAAAAGTCCGAGTCATCGCGGAGTGCGGGAACTGGAGGAAGTTCATGTGGAAGCCGCTCAAGGAGATCGCAGGAGGAGCTTAA

Protein sequence

MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA

Homology

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BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: Q9LVM2 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhN PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.3e-78
Identity = 141/197 (71.57%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 22  RRLRPPTSAAT----LQVIGRRTRFGTGKGRAAT-VRCEGIGIGDFIGGDLLKFDLGQWL 81
           +R+ PP   A+    ++ +G        K R +T V+C    I D+IGGDL+K D+GQWL
Sbjct: 9   QRVAPPCFEASQVKKIKTVGSFLVNTRSKRRRSTGVKCS--SIADYIGGDLVKPDIGQWL 68

Query: 82  SDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHL 141
            DVEEHKA+AIY+PHEGGYEGRYLNRL+ QGYYFLD+SARGLGDPETTL K +PVCPAHL
Sbjct: 69  QDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGDPETTLLKNYPVCPAHL 128

Query: 142 GKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVRVIA 201
           GKQPIARWY+PPEVDYRL ALPP+AKGLVVW++EAKVLSK+ELQFLALLP+LRP VRVIA
Sbjct: 129 GKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKVLSKSELQFLALLPSLRPNVRVIA 188

Query: 202 ECGNWRKFMWKPLKEIA 214
           ECGNWRKF+WKPL EIA
Sbjct: 189 ECGNWRKFVWKPLAEIA 203

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BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: B8HUU1 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=ndhN PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.1e-36
Identity = 73/150 (48.67%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 133
           Q++ D+E+  AL IY P EGG+EGRY  RLR  GY  L +SA GLGD  + LT++H V P
Sbjct: 9   QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRP 68

Query: 134 AHLGKQP-------IARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGK         +  ++ PP V+Y LE LPP A+GLV+W+I+ K LS+ EL +L++LP
Sbjct: 69  PHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGGA 217
              PKV+++ E G  R+F W+PLKE+A  A
Sbjct: 129 AQEPKVKIVIELGGDRQFRWQPLKEMAAAA 158

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BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: B7JYJ3 (NAD(P)H-quinone oxidoreductase subunit N OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=ndhN PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.0e-34
Identity = 69/141 (48.94%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 79  VEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHLGK 138
           +E+  +LA+Y+P EGG+EGRY  RLR  GY+   L+ARGLGD    L  +H V P HLGK
Sbjct: 14  LEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPPHLGK 73

Query: 139 QPIAR-------WYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPK 198
           + I +       ++ PP   Y+LE LPP +KGLV+WI+E  +LS+ EL++LA LPTL P+
Sbjct: 74  KNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPTLEPR 133

Query: 199 VRVIAECGNWRKFMWKPLKEI 213
           ++V+ E G  R F WKPL E+
Sbjct: 134 LKVVIELGGERYFSWKPLPEV 154

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BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: Q31L05 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=ndhN PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-33
Identity = 74/150 (49.33%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 133
           ++L  +E+  ALA+Y+P EGGYEGRYL RLR +GY  L  SARGLGDP   L  IH V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 134 AHLGKQPIAR-------WYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGKQ I          Y  P V Y L+ LP NAKGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGGA 217
              P+++V+ E G  R F W+PL  +A  A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVAEAA 158

[Close]

BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: Q5N0W6 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=ndhN PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-33
Identity = 74/150 (49.33%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 133
           ++L  +E+  ALA+Y+P EGGYEGRYL RLR +GY  L  SARGLGDP   L  IH V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 134 AHLGKQPIAR-------WYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGKQ I          Y  P V Y L+ LP NAKGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGGA 217
              P+++V+ E G  R F W+PL  +A  A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVAEAA 158

[Close]

BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_023533875.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444 bits (1142), Expect = 1.82e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216

[Close]

BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_022947360.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita moschata])

HSP 1 Score: 443 bits (1139), Expect = 5.23e-157
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL+ALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLDALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216

[Close]

BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_023007243.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita maxima])

HSP 1 Score: 438 bits (1127), Expect = 3.54e-155
Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           MPPLASMLNGAALAPSLHLHPRRLRP TS ATLQVIGRRTRFGTGKGRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPLTSPATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216

[Close]

BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: KAG6605370.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035327.1 NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 437 bits (1125), Expect = 6.88e-155
Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRA TVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAVTVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL+ALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLDALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

[Close]

BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_008456262.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 390 bits (1002), Expect = 3.90e-136
Identity = 191/214 (89.25%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           M P+ASM NGA LAP LHLH  R  P TS A + +  RR+ F  G GRAATVRCEGIGIG
Sbjct: 1   MAPVASMFNGAPLAPPLHLHSSRHHPLTSPAMVPINNRRSSFRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

[Close]

BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A6J1G6N3 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451247 PE=4 SV=1)

HSP 1 Score: 443 bits (1139), Expect = 2.53e-157
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL+ALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLDALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216

[Close]

BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A6J1L763 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499786 PE=4 SV=1)

HSP 1 Score: 438 bits (1127), Expect = 1.71e-155
Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           MPPLASMLNGAALAPSLHLHPRRLRP TS ATLQVIGRRTRFGTGKGRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPLTSPATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA 216

[Close]

BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A1S3C430 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496258 PE=4 SV=1)

HSP 1 Score: 390 bits (1002), Expect = 1.89e-136
Identity = 191/214 (89.25%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           M P+ASM NGA LAP LHLH  R  P TS A + +  RR+ F  G GRAATVRCEGIGIG
Sbjct: 1   MAPVASMFNGAPLAPPLHLHSSRHHPLTSPAMVPINNRRSSFRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

[Close]

BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A0A0KEC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133810 PE=4 SV=1)

HSP 1 Score: 389 bits (998), Expect = 7.68e-136
Identity = 191/214 (89.25%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           M PLASM NGA LAP LH H  R  P TS A L +  RR+    G GRAATVRCEGIGIG
Sbjct: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

[Close]

BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A5A7SWJ9 (NAD(P)H-quinone oxidoreductase subunit N OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00760 PE=4 SV=1)

HSP 1 Score: 362 bits (930), Expect = 1.33e-125
Identity = 178/201 (88.56%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60
           M P+ASM NGA LAP LHLH  R  P TS A + +  RR+ F  G GRAATVRCEGIGIG
Sbjct: 1   MAPVASMFNGAPLAPPLHLHSSRHHPLTSPAMVPINNRRSSFRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNW 201
           FLALLPTLRPKVRVIAECGNW
Sbjct: 181 FLALLPTLRPKVRVIAECGNW 201

[Close]

BLAST of Cp4.1LG05g10080 vs. TAIR 10
Match: AT5G58260.1 (oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor )

HSP 1 Score: 292.7 bits (748), Expect = 2.4e-79
Identity = 141/197 (71.57%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 22  RRLRPPTSAAT----LQVIGRRTRFGTGKGRAAT-VRCEGIGIGDFIGGDLLKFDLGQWL 81
           +R+ PP   A+    ++ +G        K R +T V+C    I D+IGGDL+K D+GQWL
Sbjct: 9   QRVAPPCFEASQVKKIKTVGSFLVNTRSKRRRSTGVKCS--SIADYIGGDLVKPDIGQWL 68

Query: 82  SDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHL 141
            DVEEHKA+AIY+PHEGGYEGRYLNRL+ QGYYFLD+SARGLGDPETTL K +PVCPAHL
Sbjct: 69  QDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGDPETTLLKNYPVCPAHL 128

Query: 142 GKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVRVIA 201
           GKQPIARWY+PPEVDYRL ALPP+AKGLVVW++EAKVLSK+ELQFLALLP+LRP VRVIA
Sbjct: 129 GKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKVLSKSELQFLALLPSLRPNVRVIA 188

Query: 202 ECGNWRKFMWKPLKEIA 214
           ECGNWRKF+WKPL EIA
Sbjct: 189 ECGNWRKFVWKPLAEIA 203

[Close]

BLAST of Cp4.1LG05g10080 vs. TAIR 10
Match: AT5G58260.2 (oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor )

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-57
Identity = 106/157 (67.52%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 22  RRLRPPTSAAT----LQVIGRRTRFGTGKGRAAT-VRCEGIGIGDFIGGDLLKFDLGQWL 81
           +R+ PP   A+    ++ +G        K R +T V+C    I D+IGGDL+K D+GQWL
Sbjct: 9   QRVAPPCFEASQVKKIKTVGSFLVNTRSKRRRSTGVKCS--SIADYIGGDLVKPDIGQWL 68

Query: 82  SDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHL 141
            DVEEHKA+AIY+PHEGGYEGRYLNRL+ QGYYFLD+SARGLGDPETTL K +PVCPAHL
Sbjct: 69  QDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGDPETTLLKNYPVCPAHL 128

Query: 142 GKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKV 174
           GKQPIARWY+PPEVDYRL ALPP+AKGLVVW++EAKV
Sbjct: 129 GKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKV 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVM2	3.3e-78	71.57	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana ...	[more]
B8HUU1	9.1e-36	48.67	NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / AT...	[more]
B7JYJ3	5.0e-34	48.94	NAD(P)H-quinone oxidoreductase subunit N OS=Rippkaea orientalis (strain PCC 8801...	[more]
Q31L05	5.5e-33	49.33	NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC ...	[more]
Q5N0W6	5.5e-33	49.33	NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144...	[more]

BLAST of Cp4.1LG05g10080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533875.1	1.82e-157	100.00	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022947360.1	5.23e-157	99.54	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita moschata]	[more]
XP_023007243.1	3.54e-155	99.07	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita maxima]	[more]
KAG6605370.1	6.88e-155	99.07	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic, partial [Cucurbita argy...	[more]
XP_008456262.1	3.90e-136	89.25	PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis melo...	[more]

BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6N3	2.53e-157	99.54	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1L763	1.71e-155	99.07	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A1S3C430	1.89e-136	89.25	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0KEC3	7.68e-136	89.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133810 PE=4 SV=1	[more]
A0A5A7SWJ9	1.33e-125	88.56	NAD(P)H-quinone oxidoreductase subunit N OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Cp4.1LG05g10080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58260.1	2.4e-79	71.57	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as accepto...	[more]
AT5G58260.2	2.5e-57	67.52	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as accepto...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020874	NAD(P)H-quinone oxidoreductase, subunit N	PFAM	PF11909	NdhN	coord: 74..211 e-value: 1.8E-56 score: 190.1
IPR020874	NAD(P)H-quinone oxidoreductase, subunit N	PANTHER	PTHR35515	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT N, CHLOROPLASTIC	coord: 39..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g10080.1	Cp4.1LG05g10080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0016020	membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding