Cp4.1LG05g09390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g09390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription initiation factor IIA subunit 1
Location	Cp4.1LG05: 6151848 .. 6159130 (-)
RNA-Seq Expression	Cp4.1LG05g09390
Synteny	Cp4.1LG05g09390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTCTTTATTCTCTCTTTCTTGTCCGCCTCTCTCCTCTTCCCCTTTCTCTCTCCTCCTTCTCTCTCTTCTCTCTTCTCTCTTCGTCTTCTCGTTTACCTTCTCCCTCGCCTCGTCTGCCCTTTTACTTCACAGAACTCTACAAATCCAAGAAGTTCGTACGGATCGTATGGATCTTGTTTCTTGATTTTTCTCTCCAATTTTCTCGGAGTCTCGATTCTGGGGTTCGCTAGTGGAGGGAATCGGAGGTAGACAGAGCGAGGCGGATCCGTTATGACGACTTCGACGAGCTCTATCTACATCAATGTCATCGAAGATGTCATCAACAAGCTTCGCAACGAGTTCGTTGATAATGGTCCTGGAGAGGATGTTCTCAAGGAGCTTCAAGGAGTAATTATTGATCTCCAATCTTGAAAATCGTGTTATTCTTCTTTGCTTTATACTCTTAGCTTCTCTAGTAAAATGAACATTTGCCTTTTTTTTTTTGTTTGTTTCTTCAATCTATTTGAAGGAATCCATAGAATTTTTCCGGTGATCACCGTCGGGTTTTGATCCGATTCTTTCTAGGGTTTTGAAGCTAATTTAAGCTGTGGTTGGGCTGATTGTCTTTGTTTATGGGAACTTTTAGATGTGGGAGGCGAAAATGATGCAAGCGGGTGCTGTAACCGGTCCCATAGAGAGGTCTGCGCCATCTAAGCCCACTCCCGGAGGTCCAATAACTCCGGTTCACGATCTCAATGTTCCGTACGAGGGGACTGAAGAGTACGAAACTCCCACTGCTGATCTACTCTTTCCACCGGTTAGTACTTCTGTCCTCTCCACTAAATGGTTTCCGAAGTTCGTATTTAATAATCGAAGCGATTTTGGAAATTGTAGACGCCATTACAAACTCCAATTCAAACCCCTTTACCGGGAACTGCTGACAACGGAATGTATAACATTCCTACTGGACCTAGTGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCTACCACTCCTGGAGGTAGTGCTAATAATGTTGATGTCAGATCTGGAAGGCCAACCCCGTTTATGGTAATTACTGCTTGACTCTGGTTCCACTGCCACTCTTTATATTTTCTCATTTCCTGCAGTTTACCCGATCCATACTGTCATGATTGCTGTATTTTCTTCAAAAAGGAATGGTTATATGTAGTCATGGTGGCTGTTAATTTGATTTAAAGTGGAAGAATGGCATAGATATGATTTTTGCCATCAACATTTTGAAGTATTTTGTTGATAGTTGAACATGACGTCAATTGGGGTATTTGACAAACGTCTACATTATTGTTTCAGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGGTGAGTTTATTGTTGAGGCAGTGAAAAAGTTACCACACCAAGAATTCTGCAGTAATATATATTGATTGCACTTTGTAGCCTATGTGGAGGGGCGTGAGGAAACAGACAGGGGAGCTGCTCACCCATCCCTTACACAGGTAACTCCTTTCTCATCTCACTCTTCCATCATGAAAAAGTTTGTTGCCTAATGTGAAACCCAAACCTTCCCTGTGAATTTCATCTGCTAAAGTGATTTCAAATTACTCAACTCCTTGCTGCCATATATCTAGCGGCACACACTTCAGTATGATGTTTTAACTTAGGGAGACAATTTTCAGGACTTTTTCACGATGAATGCTGGGAAGCGAAAGCGTGATGATTTTGCATCCCAGTACCAGACTAGTGGGTTTATACCGCAGCAAGATGGAGCTGTAGATGCTGACAGTAGTGTCTTTGAGATTGAGGTTTTGTTTCCTTACCTACAGTCAGTGCTCGTATATTTTTTTTTCCGGCCTTGGACTTGTATGCCAATTTTCTTTTACATAATTTCAGTTTCTAGTCTTTTGTGAGCACGAGCTAGTAATAGCAACAACCATAACAACATTCTCTATTTTTCTTTTCTTTCACTAGGGTGGATGCTTATAATTCTTTTTCCAGCACGATTGGTCATGTACATGATATATTGAGACATTCTAACACATGGAGTCAAGCTACTTCCAAATAAGCTAAGGAATGTAGTAATTCCACTTCATTTCAAGGAAACCTTTCTTTTATGGGAATTTAAGGAGACCTTTTAAACACATATTTTTGGTTTACGTGTATATGATACAAAATCAATATTTGAGGTGGAAACTTCTACTGCTATTTTCCATTGCTATCAAAAACCACTCAAAATGAATTTCACCTTGGAGAGGAAAGCAACTAACCTGGGTTGATTTTGTGGTCAAGAACGGCCAATGTAAATAATAAAAGACTTAGTTACCTTGGCAACTAAATATAGTAGGGTTACATGGTTGTCCTTTCAGAATGGTCGAGATGTACACATACTGGCCCAGATGCTAACAAATATTAAAAGAAAACATTGGAGGGAAAGCGACAATTTTATATTCAAGCTCAGCTATACATGCATTCTCTTTATGTAAATTGAAAAATCCTAAACTATTTGAGCGGCCTATTCTTTTGTTTTCGAGCTGATTCTAGTTTTCAAATGCCCTAAAAAATTGTCAATGATTATCTTAAATACTTATCTTGCTAACAAATGCCAACGTGGGGATGCTCTATGCCAACCTCCAAGTCATCCGCTAATGGAACTAACAACTAACTGCCTTATCTTGCTTACAGATTTGGCTCCCTCAATTCACCAGCTTGCTTATGCTGCCTCACGTATGTAATGTGGATTGTAGGTTGCTAGTGTCTATAAGAGAAATTAGAAATCTTAGAACTCTTTCTCGATGCCTTACATTCTTGACTGTAAATTCTGACCCTTATATTCTCTTAAAACTCAAAACTTTTTTCGGTGTACTAGACTCTGAGGGCACAAGATAATCTAGGAAGACAAGTTAAGTGGTGGTGGTTCTTCATTGTGGATAGAGCTAGAAATGGCTATCTGTTTCAGATCTAATTTACGGGTTGAACAATTTGTGTTGCTATTTGAATTTGCTAGAGGTCAAGGCAATCCTCCTAGGTGTCTATTTTAGAGGAACTGTTTGCAAAGGCTGCACTATGATCTGTGGCATTTGGATCTTCAGTCATCTTCTCAATGAGGCTGTCTATCTTTTCTAACTATGAGACCCCAATCCTCTGACCACCCGAAGTTATGAGCTAAGAAGCATGGAAAATAAAAGACATGGACACGCCTTAATTTCTAAAAGTCTAGGATAGGATAGGGCATTCACAATTATTCCAACTTAATTAAGATATATATATTATTTTTAAGTTAACACACACACACACGCACTTCAATGATTCTCATACTTGAAGTTTGTCTTAGTTTATGATCCTTATGCTTTTATGATACAATATTATATGTCGATATTCATGGATACATCCCACTAACTAATCAAATTTTATAGGAAACCAACTTTCATTAAGAAGATGTCCAAGGAGGAGATTTGGAATATAATTAGGCTTAATACCTCTTTGTAGGTCTATTTGTAAGGTTCTTTGTAATGGGGAGGGAGTCCCATTTCAGTAGTTAGACTCATCATCCTTGAAGGTTTTAACAAGAAACATAGCGTGGGACTTCTTTTGTCGGGCTGTTGCTTTTGTGTGCCCTTGCATATTCTTTCATTTCTATATGAGTGAAAACTAGGTTATAAAAAAAACTTCAAAATACGAGGAAAGATCCACTGAAATACCGGTCTTATGGAAGCAAGGAAATTCTTTCATTTTTCTCAATGTTAGTGAAAACTTGGCTTTTTACTGAGAGAAACTTTCATTAAGAAGATGAAAGATTAAAATGCATGGATAGAGGATTACATAAAGGGCTCGCAAATCTTTGTAACAAAAAATAGAGAATAATTATGAAAAAGTTCAGAATTGAGAGACCTATGAGAAGTATTAAAAAAAGTCACTTTCCAAACATTTTCCCAAGTAACTCTTTCTTTCGAGGAACACTTTCCTTTTCCTTTCCCGCTAGATAAATCACAAAATAACTTAATCCATGTGCCAAAAAATCCCTCCCTTGGAATGAAGAATTCTCCACAGCCTTTCCTAACGCCTCTTGAATGCTCTATCTCTGCATAACGAACAAACTTATCAATTTTTTAAGTGATCTAACATCTTAACAAAATGTAAATTTAAATTCGATTCTGCTTTTGCGTTGATTAATACTGTTTTTTCTTTGTCACGTAATGCAATTTAATTTCTCTTTTCATCTATGCTGATTGTATATGTCCTATATCTGCTGCTGTAGTTTCTAAGAGTTAGAATATTTTAGCTTGTTTGACGAATTTTTGAAAATTAAACCATTAACAATTATGATTTAATAGAACTGACGTGATTAAATTTTGCTGAATGCCTTTTAAATTGTGATCGGTCTTTGAAACTTCATAGTGGTAAGCTTTTGCAGATAAGTGGATGCAATGCTTCTGATGGGATACCTGACTTTAGCACTTCTGCAAACAATGCAACATCATCACGTATTGCAAGATCATTATTGAAAATTCCTCAACTTGATGGACCAATGCCTGATCCTTATGATGATGAGCTTTCGACACCCAATGTTAGCTCTCTCTCTCCCCTCCCCTTAAAGGTTTTACAAGTGTGTATTTTTAAAGCAATGGACTATTTATATAACTAAAACATAAATTTTATACTTTTACCCTTCTTGTCATGGATATCATTGAAGCAAGGGATTGTTTGTTTGGGATTAGAACCTTCCTGAATGAAAACAAATTGAAACATGTTGAATTGCATGCTCAGTCACAAAATAAACAAGAATTTGTTTAACCAAGAATTTTTGTAGTGCGATTTACTGGCTTCTTTCTAATTATTAATATTAGAGCTTATGAAGGTGATTGACTTTTGTTGTCGATGGAAGACAAAATATCATTCTAATAATTATCAAGGTTCCGTGTTGGCTAAAATAACAAGCAAGAATATGACCTGGTGACTGACACTAAAATAGCTTCGTGAAATATGCTTATTTAAACAGCAACAGATAAACTTCATTCTTGCTCTTGGTTAAAGACGCTAGTGAATGTTCCCTCTAGTTGTTTATCAAGTAAAGAAACAAAATTATAGCTCGTAGATAAAATCCCAATCAATCTGTACATTTCAGAGGTGTTCCTGGATCTGCACATTTTCTATGGTCAAGATAGTTCACTGTATGGTCAAATCAAATAAGAAGTTATTTCCCTTTCTTGTCATAATTAATTACTTGTAACACGGGATTTCTTTGCTCGCTATATTGGATATGCTGCCTACAATTGTTCGATTCTTCTGATATCTGTTGTGTTCATCCTGTGCGTTTCCTGGGTGATTTTTTTATTCAAGTTTTAGTTCACTGTGTGGCCAAATCATTTAAGAAGCTATTTCCCTTTCTTGTCACAATTAATACTTGTAACACGGGATTTCTTTGCTCGCTATATTGGATATGCTGCCTACAATTGTTCGATTCTTCTGATATCTGTTGTGTTCATCCTGTGCGTTTCCTGGGTGATTTTTTTATTCAAGTTTTAGTTCACTGTGTGGCCAAATCATTTAAGAAGCTATTTCCCTTTCTTGTCACAATTAATACTTGTAACACGGGATTTCTTTGCTCGCTATATTGGATATGCTGCCTACAATTGTTCGATTCTTCTGATATCTGTTGTGTTCATCCTGTGCGTTTCCTGGGTTGATTTTTTTATTCAAGTTTTAGTTCACTGTGTGGCCAAATCAAATAAGAAGTTATTTCCCTTTCTTGTCACAATTAATTACTTGTAACACGGGAATTCTTTGCTCGCTATATTGGATATGCTGCCTACAATTGTTCGATTCCTCTGATATCTGTTGTGTTCATCCTTCCTGGGTTGATTTTTTTAATCAATGAGATGGATACTTTTCTTTGAGATTGAAATCCTGAAATCATAATTAATGAAAATGTTGTTCCTATTGCTCTCCTTCCACTGAGTTTATTTTTTGTTTTATCTTTCCATAAAACTTATTCAACATTTCTGACATCTTTTGCAGATCTACAATTACCAGGGTGTCTTTAATGAAGACTACAACATTGCAAATACACCAGCACCTAATGGTAAATTTTGTAAAGGATGTCTTGATGATAGTGATTGTTTATGGAAAGGACGAAAATTTTGTTGTTTTTTTTATTGTCATTGGAAAAAGATACTAAACGAAAGGTTTAAGTTCAATTTCTGTTATGAACTTCCACATCTAAATACTTTGGCATGGTCTCTCTAAGTTTTCATAAATTTGTTATGGTTTTTCTTGTTAAACTTTTGCATTGTATTTAATGGAAATCTTTAAGTCGCCCTTTTTAAAACTTGTTATCTGACATCAATGATATGTGTTGTTTATATTAACTTTTATGATGTGTTATCAAAATTTAGCGATTGGATTATATGTAATTTAAGGATCAGAATTGAACATTTGAAAGAATAAAAAACATCAGAACAAGGATGAAAGCTAAGGTTCCTAATGTTAACATGTTGTCTGTTACTTCTTCTTGACAGACCCACCAGCTGGCACTCCTGCCGTTGTCGTTCAGGATGATGTTGGTGAGGAGGAGGAGGATAGTGAGCCTTCATTGAATGAGGATGACGACGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTTTTAGCTCAGTTTGATAAGGTACTTTAGTCCTGGTTGGTAGGTGCGGGTTCAGCATATGCTTGAGCATTTGGTTTTGAAATTCTCAGAATTTAATGCACCATTGGATTAATTTTATGTGAAAGGTTACTCGGACCAAGAGTAGGTGGAAATGTACACTAAAGGATGGAATCATGCATATTAACAATAAGGACATTCTCTTCAACAAGGTGAATTCCCCCCCTCTCCCAAAACTACAAGTTATAGATATTAACCGACCTCGGTTTTCATGTAAGCTCGTTTCTTTGCAGGCGACTGGGGAATTCGACTTCTGATTTTTAATGTAGGTGCACCTTCATCGGTCGGTTATCGGTAGGAGCAGTGTTTCAAAAGAATTCCAGGAAGTTGGTTCATTGGGTGTTTAGTTGTCTTCAGTTAATATTTGTTTTGTGAACGCAGGAGGGAAAATGACATGTTGATTCCTTATTATCATTTTGATGAATGTTATTAGCGTTTTGTATATAACGGATGAGAGCTCTTTCGGCCTTCAATGCATATCATATGGCAACTTGAGGATTTTCGACCAAATTTGTCATTGCTCTAATGGAATTTATTTGTAACTTCAACCCCCTTTTCT

mRNA sequence

CACTCTTTATTCTCTCTTTCTTGTCCGCCTCTCTCCTCTTCCCCTTTCTCTCTCCTCCTTCTCTCTCTTCTCTCTTCTCTCTTCGTCTTCTCGTTTACCTTCTCCCTCGCCTCGTCTGCCCTTTTACTTCACAGAACTCTACAAATCCAAGAAGTTCGTACGGATCGTATGGATCTTGTTTCTTGATTTTTCTCTCCAATTTTCTCGGAGTCTCGATTCTGGGGTTCGCTAGTGGAGGGAATCGGAGGTAGACAGAGCGAGGCGGATCCGTTATGACGACTTCGACGAGCTCTATCTACATCAATGTCATCGAAGATGTCATCAACAAGCTTCGCAACGAGTTCGTTGATAATGGTCCTGGAGAGGATGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAAATGATGCAAGCGGGTGCTGTAACCGGTCCCATAGAGAGGTCTGCGCCATCTAAGCCCACTCCCGGAGGTCCAATAACTCCGGTTCACGATCTCAATGTTCCGTACGAGGGGACTGAAGAGTACGAAACTCCCACTGCTGATCTACTCTTTCCACCGACGCCATTACAAACTCCAATTCAAACCCCTTTACCGGGAACTGCTGACAACGGAATGTATAACATTCCTACTGGACCTAGTGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCTACCACTCCTGGAGGTAGTGCTAATAATGTTGATGTCAGATCTGGAAGGCCAACCCCGTTTATGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTATGTGGAGGGGCGTGAGGAAACAGACAGGGGAGCTGCTCACCCATCCCTTACACAGGACTTTTTCACGATGAATGCTGGGAAGCGAAAGCGTGATGATTTTGCATCCCAGTACCAGACTAGTGGGTTTATACCGCAGCAAGATGGAGCTGTAGATGCTGACAGTAGTGTCTTTGAGATTGAGATTTGGCTCCCTCAATTCACCAGCTTGCTTATGCTGCCTCACATAAGTGGATGCAATGCTTCTGATGGGATACCTGACTTTAGCACTTCTGCAAACAATGCAACATCATCACGTATTGCAAGATCATTATTGAAAATTCCTCAACTTGATGGACCAATGCCTGATCCTTATGATGATGAGCTTTCGACACCCAATATCTACAATTACCAGGGTGTCTTTAATGAAGACTACAACATTGCAAATACACCAGCACCTAATGACCCACCAGCTGGCACTCCTGCCGTTGTCGTTCAGGATGATGTTGGTGAGGAGGAGGAGGATAGTGAGCCTTCATTGAATGAGGATGACGACGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTTTTAGCTCAGTTTGATAAGGTTACTCGGACCAAGAGTAGGTGGAAATGTACACTAAAGGATGGAATCATGCATATTAACAATAAGGACATTCTCTTCAACAAGGCGACTGGGGAATTCGACTTCTGATTTTTAATGTAGGTGCACCTTCATCGGTCGGTTATCGGAGGGAAAATGACATGTTGATTCCTTATTATCATTTTGATGAATGTTATTAGCGTTTTGTATATAACGGATGAGAGCTCTTTCGGCCTTCAATGCATATCATATGGCAACTTGAGGATTTTCGACCAAATTTGTCATTGCTCTAATGGAATTTATTTGTAACTTCAACCCCCTTTTCT

Coding sequence (CDS)

ATGACGACTTCGACGAGCTCTATCTACATCAATGTCATCGAAGATGTCATCAACAAGCTTCGCAACGAGTTCGTTGATAATGGTCCTGGAGAGGATGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAAATGATGCAAGCGGGTGCTGTAACCGGTCCCATAGAGAGGTCTGCGCCATCTAAGCCCACTCCCGGAGGTCCAATAACTCCGGTTCACGATCTCAATGTTCCGTACGAGGGGACTGAAGAGTACGAAACTCCCACTGCTGATCTACTCTTTCCACCGACGCCATTACAAACTCCAATTCAAACCCCTTTACCGGGAACTGCTGACAACGGAATGTATAACATTCCTACTGGACCTAGTGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCTACCACTCCTGGAGGTAGTGCTAATAATGTTGATGTCAGATCTGGAAGGCCAACCCCGTTTATGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTATGTGGAGGGGCGTGAGGAAACAGACAGGGGAGCTGCTCACCCATCCCTTACACAGGACTTTTTCACGATGAATGCTGGGAAGCGAAAGCGTGATGATTTTGCATCCCAGTACCAGACTAGTGGGTTTATACCGCAGCAAGATGGAGCTGTAGATGCTGACAGTAGTGTCTTTGAGATTGAGATTTGGCTCCCTCAATTCACCAGCTTGCTTATGCTGCCTCACATAAGTGGATGCAATGCTTCTGATGGGATACCTGACTTTAGCACTTCTGCAAACAATGCAACATCATCACGTATTGCAAGATCATTATTGAAAATTCCTCAACTTGATGGACCAATGCCTGATCCTTATGATGATGAGCTTTCGACACCCAATATCTACAATTACCAGGGTGTCTTTAATGAAGACTACAACATTGCAAATACACCAGCACCTAATGACCCACCAGCTGGCACTCCTGCCGTTGTCGTTCAGGATGATGTTGGTGAGGAGGAGGAGGATAGTGAGCCTTCATTGAATGAGGATGACGACGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTTTTAGCTCAGTTTGATAAGGTTACTCGGACCAAGAGTAGGTGGAAATGTACACTAAAGGATGGAATCATGCATATTAACAATAAGGACATTCTCTTCAACAAGGCGACTGGGGAATTCGACTTCTGA

Protein sequence

MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPTGPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGREETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQFTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF

Homology

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BLAST of Cp4.1LG05g09390 vs. ExPASy Swiss-Prot
Match: Q9USU9 (Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-12
Identity = 105/426 (24.65%), Postives = 165/426 (38.73%), Query Frame = 0


Query: 8   IYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSKPTPGG 67
           +Y +VI DVI   R++F +NG  +  L+ELQ +W++K++     T P  ++      P G
Sbjct: 9   VYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVATFPWAQA------PVG 68

Query: 68  PITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPTGPSDHSA 127
              P+  L  P  G     T + D+   P    +PI   +   A   +  + T    H  
Sbjct: 69  TF-PIGQLFDPVSG---LRTDSLDVT-APAVANSPILNNI--AAIRAVQQMDTFAQQHGN 128

Query: 128 SGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGREETDRGAA 187
           S   + P  + P  SA N+   S                       A    +   +  A 
Sbjct: 129 SNYYSPPTPSLP-QSATNISFDSS----------------------AIPNVQSNPNNTAP 188

Query: 188 HPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQ-QDGAVDADSSVFEIEIWLPQFTSLLM 247
            PS + +   +   +       + + T+      Q+ A D+ S+          F  LL+
Sbjct: 189 FPSYSSNSLQLPTNQTADSPIINDHSTANVTSTGQEHAPDSSST--------NSFGGLLL 248

Query: 248 LPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN------ 307
               S   +  G     T ++N T    A S   +PQ DG + D  DD  S  N      
Sbjct: 249 PNQNSPKKSELG----ETESSNTTP---ANSRNDVPQTDGAIHD-LDDAGSPSNFESNRF 308

Query: 308 ------------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLN 367
                       +     +   D  I +      PP  TP              S+ ++N
Sbjct: 309 AIAQKADAEIYEVLKKNRILQIDGTIEDNEDEKKPPVDTP--------------SDEAIN 368

Query: 368 EDDDDDDLDDVDQGEELST--QHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKA 413
            D DD D D+  + EE S   Q +VL  +DKV   K++WKC  +DG++ +N KD LF KA
Sbjct: 369 SDLDDPDSDEAPETEEGSDIGQAIVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKA 368

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy Swiss-Prot
Match: Q54G80 (Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2a1 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-10
Identity = 59/184 (32.07%), Postives = 89/184 (48.37%), Query Frame = 0


Query: 251 SGCNASDGIPDFSTSANNATSSRIARSLLKI----PQLDGPMPDPYDDELSTPNIYNYQG 310
           +G N ++   + + S+N++ ++ +  SL  I    PQ DG + +  +D+ +  N  +   
Sbjct: 133 NGSNNNNNNNNSNNSSNSSNNNNLPSSLRSIMNPMPQNDGTLDESDNDDDNNNNNNDNDN 192

Query: 311 VFNED---------------YNIANTPAPNDPPAGTPAVVVQDDVGEEE------EDSEP 370
             N+D               +N       ND       +   DD+ +EE      +  E 
Sbjct: 193 ENNKDNIDKLIIDGFKKNFNFNGDEVIPQND------GLNDDDDLDDEEIGGGGGKVEED 252

Query: 371 SLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 410
           SL  D DDDD DD D       +H VL Q++KV+R K++ KC  KDGIMH+N KD LFNK
Sbjct: 253 SLGSDLDDDDDDDPDP----IIEHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNK 306

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy Swiss-Prot
Match: O08949 (Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2a1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.8e-09
Identity = 102/435 (23.45%), Postives = 165/435 (37.93%), Query Frame = 0


Query: 2   TTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG-------- 61
           T +   +Y +VIEDVIN +R+ F+D+G  E VL EL+ +WE K+MQ+ AV G        
Sbjct: 7   TNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQL 66

Query: 62  PIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN 121
            ++     +P         H      + T   +  T  +L P +   T  Q  +P +   
Sbjct: 67  LLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLI 126

Query: 122 GMYNIPTGPSDHSASGTDASPAATTP--------GGSANNVDVRSGRPTPFMQPPSWMGQ 181
              N  +  S  + + T A PA  TP        G     V   +G    F    S + Q
Sbjct: 127 QHMNASSITSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQ 186

Query: 182 RTPVDVNIAYVEGREETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAV 241
           +  +          +    G   P + Q    +  G                I  Q G +
Sbjct: 187 QQVIP---------QMQPGGVQAPVIQQVLAPLPGG----------------ISPQTGVI 246

Query: 242 DADSSVFEIEIWLPQFTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLD 301
                +         FT           N +  IP    +   A +        +IP   
Sbjct: 247 IQPQQIL--------FTG----------NKTQVIPTTVAAPTPAQA--------QIPAAG 306

Query: 302 GPMPDPYDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEP 361
              P     +   P +    G         +T +  D          +D   +EEED E 
Sbjct: 307 QQQPQAQPAQQQAPLVLQVDGT-------GDTSSEEDEDE------EEDYDDDEEEDKEK 366

Query: 362 SLNED--------DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHIN 413
              ED        + +DD+ D +  E   T+++V+ Q+DK+ R+K++WK  LKDGIM++N
Sbjct: 367 DGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 377

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy Swiss-Prot
Match: P52654 (Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227 GN=TfIIA-L PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-08
Identity = 96/431 (22.27%), Postives = 167/431 (38.75%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSK 62
           TS   +Y  VIEDVI  +R+ F+D G  E VL+E++ +W  K++ + AV    +    S 
Sbjct: 6   TSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELSPDSGDGSH 65

Query: 63  PTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPTGP 122
           P P           +     + ++   A             +     TA     +I    
Sbjct: 66  PPP-----------IVANNPKSHKAANA-----------KAKKAAAATAVTSHQHIGGNS 125

Query: 123 SDHSASGTDASPAATTPGGSANNV-----DVRSGRPTPFMQPPSWMGQRTPVDVNIAYVE 182
           S  S  G  +S       G  N +     +V S  P P + P S            A + 
Sbjct: 126 SMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPP-LHPTS-----------AASMM 185

Query: 183 GREETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEI- 242
            +++    +   S+     T++  +    +          +P   G+  ++S V  I++ 
Sbjct: 186 QKQQQAASSGQGSI-PIVATLDPNRIMPVNIT--------LPSPAGSASSESRVLTIQVP 245

Query: 243 -------WLPQFTSLLMLPHISGCNASDGIPDFSTSANNATSS-RIARSLLKIPQLDGPM 302
                   L Q  +  ++  I     +          N A SS    ++L    QLDG +
Sbjct: 246 ASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQKTLAAAKQLDGAL 305

Query: 303 PDPYDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLN 362
               +DE               D NI N                 DD   +++D E + +
Sbjct: 306 DSSDEDESE-----------ESDDNIDN----------------DDDDDLDKDDDEDAEH 365

Query: 363 ED-------DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDI 413
           ED       + +DD+ D D  E   T ++++ Q+DK+TR++++WK  LKDGIM++  KD 
Sbjct: 366 EDAAEEEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDY 366

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy Swiss-Prot
Match: Q99PM3 (Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-08
Identity = 102/436 (23.39%), Postives = 167/436 (38.30%), Query Frame = 0


Query: 2   TTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG-------- 61
           T +   +Y +VIEDVIN +R+ F+D+G  E VL EL+ +WE K+MQ+ AV G        
Sbjct: 7   TNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQL 66

Query: 62  --PIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTA 121
              +++    +          H    P + T   +  T  +L P +   T  Q  +P + 
Sbjct: 67  LLQVQQQHQPQQQQHHHHHHQHQQAQPQQ-TVPQQAQTQQVLIPASQQATAPQVIVPDSK 126

Query: 122 DNGMYNIPTGPSDHSASGTDASPAATTP-------GGSANNVDVRSGRPTPFMQPPSWMG 181
                N  +  S  + + T A PA  TP        G    V VR+     ++  P    
Sbjct: 127 LLQHMNASSITSAAATAATLALPAGVTPVQQLLTNSGQLLQV-VRAANGAQYILQPQ--- 186

Query: 182 QRTPVDVNIAYVEGREETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGA 241
           Q   +   +      +    G   P + Q    +  G                I  Q G 
Sbjct: 187 QSVVLQQQVI----PQMQPGGVQAPVIQQVLAPLPGG----------------ISPQTGV 246

Query: 242 VDADSSVFEIEIWLPQFTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQL 301
           +     +         FT           N +  IP         T +  A +   +P  
Sbjct: 247 IIQPQQIL--------FTG----------NKTQVIP--------TTVAAPAPAQAPMPAA 306

Query: 302 DGPMPDPYDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSE 361
               P     +   P +    G         +T +  D          +D   +EEED E
Sbjct: 307 GQQQPQAQPAQQQAPLVLQVDGT-------GDTSSEEDEDE------EEDYDDDEEEDKE 366

Query: 362 PSLNED--------DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHI 413
               ED        + +DD+ D +  E   T+++V+ Q+DK+ R+K++WK  LKDGIM++
Sbjct: 367 KDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 378

[Close]

BLAST of Cp4.1LG05g09390 vs. NCBI nr
Match: XP_023532247.1 (transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 788 bits (2036), Expect = 2.29e-287
Identity = 398/412 (96.60%), Postives = 398/412 (96.60%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180
           GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180

Query: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQ 240
           ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEI    
Sbjct: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEI---- 240

Query: 241 FTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300
                     SGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN
Sbjct: 241 ----------SGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300

Query: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360
           IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD
Sbjct: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360

Query: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Cp4.1LG05g09390 vs. NCBI nr
Match: XP_022946939.1 (transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 787 bits (2033), Expect = 6.55e-287
Identity = 397/412 (96.36%), Postives = 398/412 (96.60%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180
           GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180

Query: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQ 240
           ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDAD+SVFEIEI    
Sbjct: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEI---- 240

Query: 241 FTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300
                     SGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN
Sbjct: 241 ----------SGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300

Query: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360
           IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD
Sbjct: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360

Query: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Cp4.1LG05g09390 vs. NCBI nr
Match: KAG6605439.1 (hypothetical protein SDJN03_02756, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 783 bits (2022), Expect = 3.11e-285
Identity = 395/412 (95.87%), Postives = 396/412 (96.12%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
            KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  PKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180
           GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180

Query: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQ 240
           ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDAD+SVFEIEI    
Sbjct: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEI---- 240

Query: 241 FTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300
                     SGCNASDGIPDFSTSANNATS RIARSLLKIPQLDGPMPDPYDDELSTPN
Sbjct: 241 ----------SGCNASDGIPDFSTSANNATSLRIARSLLKIPQLDGPMPDPYDDELSTPN 300

Query: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360
           IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD
Sbjct: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360

Query: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Cp4.1LG05g09390 vs. NCBI nr
Match: XP_023007009.1 (transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 782 bits (2019), Expect = 8.91e-285
Identity = 394/412 (95.63%), Postives = 395/412 (95.87%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180
           GPSDHSASGTDASPAATTPGGS NNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE
Sbjct: 121 GPSDHSASGTDASPAATTPGGSTNNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180

Query: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQ 240
           ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDAD+SVFEIEI    
Sbjct: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEI---- 240

Query: 241 FTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300
                     SGCNASDGIPDFSTSANN TSS IARSLLKIPQLDGPMPDPYDDELSTPN
Sbjct: 241 ----------SGCNASDGIPDFSTSANNETSSHIARSLLKIPQLDGPMPDPYDDELSTPN 300

Query: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360
           IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD
Sbjct: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360

Query: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Cp4.1LG05g09390 vs. NCBI nr
Match: KAG7035387.1 (toa1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 777 bits (2006), Expect = 7.31e-282
Identity = 399/455 (87.69%), Postives = 402/455 (88.35%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
            KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  PKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180
           GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180

Query: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQ 240
           ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDAD+SVFEIE+  P 
Sbjct: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEVLFPY 240

Query: 241 FT-------------------------------------------SLLMLPHISGCNASD 300
            T                                           S L+   ISGCNASD
Sbjct: 241 LTYNLASSVHQLAYAASQVKAILLGVCFRGTVCKGCTMICGIWIFSHLLNAAISGCNASD 300

Query: 301 GIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYNIANT 360
           GIPDFSTSANNATS RIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYNIANT
Sbjct: 301 GIPDFSTSANNATSLRIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYNIANT 360

Query: 361 PAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDK 412
           PAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDK
Sbjct: 361 PAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDK 420

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy TrEMBL
Match: A0A6J1G5C0 (transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450969 PE=3 SV=1)

HSP 1 Score: 787 bits (2033), Expect = 3.17e-287
Identity = 397/412 (96.36%), Postives = 398/412 (96.60%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180
           GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180

Query: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQ 240
           ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDAD+SVFEIEI    
Sbjct: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEI---- 240

Query: 241 FTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300
                     SGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN
Sbjct: 241 ----------SGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300

Query: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360
           IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD
Sbjct: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360

Query: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy TrEMBL
Match: A0A6J1L3S0 (transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499632 PE=3 SV=1)

HSP 1 Score: 782 bits (2019), Expect = 4.32e-285
Identity = 394/412 (95.63%), Postives = 395/412 (95.87%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180
           GPSDHSASGTDASPAATTPGGS NNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE
Sbjct: 121 GPSDHSASGTDASPAATTPGGSTNNVDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGRE 180

Query: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWLPQ 240
           ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDAD+SVFEIEI    
Sbjct: 181 ETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEI---- 240

Query: 241 FTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPN 300
                     SGCNASDGIPDFSTSANN TSS IARSLLKIPQLDGPMPDPYDDELSTPN
Sbjct: 241 ----------SGCNASDGIPDFSTSANNETSSHIARSLLKIPQLDGPMPDPYDDELSTPN 300

Query: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360
           IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD
Sbjct: 301 IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVD 360

Query: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 361 QGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy TrEMBL
Match: A0A1S3CM61 (transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC103502057 PE=3 SV=1)

HSP 1 Score: 723 bits (1867), Expect = 7.02e-262
Identity = 370/415 (89.16%), Postives = 379/415 (91.33%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           M TSTSSIYINVIEDVINKLR+EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN MYN+PT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANN-VDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTD SPAATTPGGS NN V+VRSGRPTP+MQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 EETDRGAA--HPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIW 240
           EE DRGAA  HPSLTQDFF MN+GKRKRDDFASQYQ +GFIPQQDGA DA +SVFEIEI 
Sbjct: 181 EEADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEI- 240

Query: 241 LPQFTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELS 300
                        SGCN+SDG P   TSA +ATSS I RSLLKIPQLDGPMPDPYDD LS
Sbjct: 241 -------------SGCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLS 300

Query: 301 TPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLD 360
           TPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVV QDDV EEEEDSEPSLNEDDDDDDLD
Sbjct: 301 TPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLD 360

Query: 361 DVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           DVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 361 DVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 401

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy TrEMBL
Match: A0A0A0KE66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1)

HSP 1 Score: 721 bits (1862), Expect = 5.97e-259
Identity = 371/416 (89.18%), Postives = 380/416 (91.35%), Query Frame = 0


Query: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           M TSTSSIYINVIEDVINKLR+EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 135 MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 194

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN MYN+PT
Sbjct: 195 SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 254

Query: 121 GPSDHSASGTDASPAATTPGGSANN-VDVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTDASPAATTPGGS NN V+VRSGRPTP+MQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 255 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 314

Query: 181 EET-DRGAA--HPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEI 240
           EE  DRGAA  HPSLTQDFF MN+GKRKRDDFASQYQ +GFIPQQDGA DA +SVFEIEI
Sbjct: 315 EEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEI 374

Query: 241 WLPQFTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDEL 300
                         SGCN+SDG P   TSA +ATSS I RSLLKIPQLDGPMPDPYDD L
Sbjct: 375 --------------SGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVL 434

Query: 301 STPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDL 360
           STPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVV QDDV EEEEDSEPSLNEDDDDDDL
Sbjct: 435 STPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDL 494

Query: 361 DDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 412
           DDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 495 DDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 536

[Close]

BLAST of Cp4.1LG05g09390 vs. ExPASy TrEMBL
Match: A0A6J1G5F3 (uncharacterized protein LOC111450969 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450969 PE=3 SV=1)

HSP 1 Score: 712 bits (1838), Expect = 3.80e-258
Identity = 358/373 (95.98%), Postives = 359/373 (96.25%), Query Frame = 0


Query: 40  MWEAKMMQAGAVTGPIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPL 99
           MWEAKMMQAGAVTGPIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPL
Sbjct: 1   MWEAKMMQAGAVTGPIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPL 60

Query: 100 QTPIQTPLPGTADNGMYNIPTGPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQP 159
           QTPIQTPLPGTADNGMYNIPTGPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQP
Sbjct: 61  QTPIQTPLPGTADNGMYNIPTGPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQP 120

Query: 160 PSWMGQRTPVDVNIAYVEGREETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIP 219
           PSWMGQRTPVDVNIAYVEGREETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIP
Sbjct: 121 PSWMGQRTPVDVNIAYVEGREETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIP 180

Query: 220 QQDGAVDADSSVFEIEIWLPQFTSLLMLPHISGCNASDGIPDFSTSANNATSSRIARSLL 279
           QQDGAVDAD+SVFEIEI              SGCNASDGIPDFSTSANNATSSRIARSLL
Sbjct: 181 QQDGAVDADNSVFEIEI--------------SGCNASDGIPDFSTSANNATSSRIARSLL 240

Query: 280 KIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEE 339
           KIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEE
Sbjct: 241 KIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEE 300

Query: 340 EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNK 399
           EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNK
Sbjct: 301 EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNK 359

Query: 400 DILFNKATGEFDF 412
           DILFNKATGEFDF
Sbjct: 361 DILFNKATGEFDF 359

[Close]

BLAST of Cp4.1LG05g09390 vs. TAIR 10
Match: AT1G07470.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 444.5 bits (1142), Expect = 9.2e-125
Identity = 246/421 (58.43%), Postives = 301/421 (71.50%), Query Frame = 0


Query: 2   TTSTSSIYINVIEDVINKLRNEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 61
           TT+TS++YI+VIEDV+NK+R EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+ 
Sbjct: 4   TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63

Query: 62  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN-GMYNIP 121
            KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPPTPLQTP+ TPLPGTADN  MYNIP
Sbjct: 64  QKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIP 123

Query: 122 TGPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPS-WMGQRTPVDVNIAYVEG 181
           TG SD+   GT+          +  N+DV++ RP+P+M PPS W   R  +DVN+AYV+G
Sbjct: 124 TGSSDYPTPGTE----------NGVNIDVKA-RPSPYMPPPSPWTNPR--LDVNVAYVDG 183

Query: 182 REETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEIWL 241
           R+E +RG ++   TQD F  ++GKRKRDD ++ YQ  G IPQQDGA DA          +
Sbjct: 184 RDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDA----------I 243

Query: 242 PQFTSLLMLPHISGCNASDGIPDFSTSANNAT---SSRIARSLL----KIPQLDGPMPDP 301
           P+                    +F  +A   T     +I R L+    KIPQ+DGPMPDP
Sbjct: 244 PE-------------------ANFECAALRITYVGDRKIPRDLIGSSSKIPQVDGPMPDP 303

Query: 302 YDDELSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDD 361
           YD+ LSTPNIY+YQG  NE++N A TPAPN+    TP  V  D +    ED E  LNEDD
Sbjct: 304 YDEMLSTPNIYSYQGP-NEEFNEARTPAPNEIQTSTPVAVPNDII----EDDEELLNEDD 363

Query: 362 DDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFD 413
           DDD+LDD++ GE+++TQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKATGEFD
Sbjct: 364 DDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEFD 375

[Close]

BLAST of Cp4.1LG05g09390 vs. TAIR 10
Match: AT1G07480.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 442.2 bits (1136), Expect = 4.6e-124
Identity = 247/416 (59.38%), Postives = 306/416 (73.56%), Query Frame = 0


Query: 2   TTSTSSIYINVIEDVINKLRNEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 61
           TT+TS++YI+VIEDV+NK+R EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+ 
Sbjct: 4   TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63

Query: 62  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN-GMYNIP 121
            KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPPTPLQTP+ TPLPGTADN  MYNIP
Sbjct: 64  QKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIP 123

Query: 122 TGPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPS-WMGQRTPVDVNIAYVEG 181
           TG SD+   GT+          +  N+DV++ RP+P+M PPS W   R  +DVN+AYV+G
Sbjct: 124 TGSSDYPTPGTE----------NGVNIDVKA-RPSPYMPPPSPWTNPR--LDVNVAYVDG 183

Query: 182 REETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDA-DSSVFEIEIW 241
           R+E +RG ++   TQD F  ++GKRKRDD +  YQ  G IPQQDGA DA   + FE + +
Sbjct: 184 RDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECDAF 243

Query: 242 LPQFTSLLMLPHISGCNASDGIP-DFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDEL 301
             + TS+              +P DF +S++            KIPQ+DGPMPDPYD+ L
Sbjct: 244 --RITSI----------GDRKVPRDFFSSSS------------KIPQVDGPMPDPYDEML 303

Query: 302 STPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDL 361
           STPNIY+YQG  +E++N A TPAPN+    TP V VQ+D+    ED E  LNEDDDDD+L
Sbjct: 304 STPNIYSYQGP-SEEFNEARTPAPNEIQTSTP-VAVQNDI---IEDDEELLNEDDDDDEL 363

Query: 362 DDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 413
           DD++ GE+++TQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 364 DDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375

[Close]

BLAST of Cp4.1LG05g09390 vs. TAIR 10
Match: AT1G07480.2 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 442.2 bits (1136), Expect = 4.6e-124
Identity = 247/416 (59.38%), Postives = 306/416 (73.56%), Query Frame = 0


Query: 2   TTSTSSIYINVIEDVINKLRNEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 61
           TT+TS++YI+VIEDV+NK+R EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+ 
Sbjct: 4   TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63

Query: 62  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN-GMYNIP 121
            KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPPTPLQTP+ TPLPGTADN  MYNIP
Sbjct: 64  QKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIP 123

Query: 122 TGPSDHSASGTDASPAATTPGGSANNVDVRSGRPTPFMQPPS-WMGQRTPVDVNIAYVEG 181
           TG SD+   GT+          +  N+DV++ RP+P+M PPS W   R  +DVN+AYV+G
Sbjct: 124 TGSSDYPTPGTE----------NGVNIDVKA-RPSPYMPPPSPWTNPR--LDVNVAYVDG 183

Query: 182 REETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDA-DSSVFEIEIW 241
           R+E +RG ++   TQD F  ++GKRKRDD +  YQ  G IPQQDGA DA   + FE + +
Sbjct: 184 RDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECDAF 243

Query: 242 LPQFTSLLMLPHISGCNASDGIP-DFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDEL 301
             + TS+              +P DF +S++            KIPQ+DGPMPDPYD+ L
Sbjct: 244 --RITSI----------GDRKVPRDFFSSSS------------KIPQVDGPMPDPYDEML 303

Query: 302 STPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDL 361
           STPNIY+YQG  +E++N A TPAPN+    TP V VQ+D+    ED E  LNEDDDDD+L
Sbjct: 304 STPNIYSYQGP-SEEFNEARTPAPNEIQTSTP-VAVQNDI---IEDDEELLNEDDDDDEL 363

Query: 362 DDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 413
           DD++ GE+++TQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 364 DDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375

[Close]

BLAST of Cp4.1LG05g09390 vs. TAIR 10
Match: AT5G59230.1 (transcription factor-related )

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-13
Identity = 37/80 (46.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 333 QDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDG 392
           +D+   + +++E  LNEDDDD++ DD+D  ++++ QHLV+ QFDKV R+K++W+C    G
Sbjct: 109 RDEAIVDVDENEEPLNEDDDDEE-DDIDD-DDMNIQHLVMCQFDKVKRSKNKWECKFNAG 168

Query: 393 IMHINNKDILFNKATGEFDF 413
           +M IN K++LF++ATG+F+F
Sbjct: 169 VMQINGKNVLFSQATGDFNF 186

HSP 2 Score: 63.2 bits (152), Expect = 5.8e-10
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 2  TTSTSSIYINVIEDVINKLRNEFVDNGP-GEDVLKELQGMWEAKMMQAGAVTGPIERSAP 61
          T+ TSS Y  VI+DVINK R + V NG   E VL ++Q MW+ KM+QAGA++G IE S+ 
Sbjct: 5  TSDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGAMSGTIETSSA 64

Query: 62 SKPT 65
          S PT
Sbjct: 65 SIPT 68

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g09390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9USU9	6.0e-12	24.65	Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (...	[more]
Q54G80	2.5e-10	32.07	Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=446...	[more]
O08949	4.8e-09	23.45	Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=G...	[more]
P52654	2.4e-08	22.27	Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227...	[more]
Q99PM3	4.0e-08	23.39	Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1...	[more]

BLAST of Cp4.1LG05g09390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532247.1	2.29e-287	96.60	transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita pepo su...	[more]
XP_022946939.1	6.55e-287	96.36	transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita moschat...	[more]
KAG6605439.1	3.11e-285	95.87	hypothetical protein SDJN03_02756, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023007009.1	8.91e-285	95.63	transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita maxima]	[more]
KAG7035387.1	7.31e-282	87.69	toa1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG05g09390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5C0	3.17e-287	96.36	transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1L3S0	4.32e-285	95.63	transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita maxim...	[more]
A0A1S3CM61	7.02e-262	89.16	transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A0A0KE66	5.97e-259	89.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1	[more]
A0A6J1G5F3	3.80e-258	95.98	uncharacterized protein LOC111450969 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cp4.1LG05g09390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07470.1	9.2e-125	58.43	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07480.1	4.6e-124	59.38	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07480.2	4.6e-124	59.38	Transcription factor IIA, alpha/beta subunit	[more]
AT5G59230.1	1.9e-13	46.25	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004855	Transcription factor IIA, alpha/beta subunit	SMART	SM01371	TFIIA_2	coord: 7..412 e-value: 5.5E-98 score: 341.5
IPR004855	Transcription factor IIA, alpha/beta subunit	PFAM	PF03153	TFIIA	coord: 276..411 e-value: 2.0E-31 score: 110.4 coord: 8..194 e-value: 2.0E-15 score: 57.7
IPR004855	Transcription factor IIA, alpha/beta subunit	PANTHER	PTHR12694	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	coord: 277..412
IPR004855	Transcription factor IIA, alpha/beta subunit	PANTHER	PTHR12694	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	coord: 2..227
None	No IPR available	GENE3D	1.10.287.100		coord: 1..53 e-value: 2.6E-20 score: 73.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 336..360
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..151
None	No IPR available	PANTHER	PTHR12694:SF16	BNAC08G45360D PROTEIN	coord: 277..412
None	No IPR available	PANTHER	PTHR12694:SF16	BNAC08G45360D PROTEIN	coord: 2..227
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 367..412 e-value: 2.5046E-27 score: 102.603
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 5..62 e-value: 1.05536E-16 score: 73.3275
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 3..46
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 347..412 e-value: 9.2E-26 score: 91.1
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 355..412

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g09390.1	Cp4.1LG05g09390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0003743	translation initiation factor activity