Cp4.1LG05g09370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g09370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 6121627 .. 6121890 (-)
RNA-Seq ExpressionCp4.1LG05g09370
SyntenyCp4.1LG05g09370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGGCTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAGGGCGACTTGGCGGAGGAGGCGGAGGGAGTGTGCTTGTGGGATAAGCTTCTTAACAATGGCAGCTTGGAGGATGAGGTTCTGGAGAAGAAGGACTTAGAAGAAGAAGAAGAAGAAGAAGAAGATTCCTTTCTGGAAAGCTTCCATTTTTCTTCCATTAATGGCGGAAAATCAAATGGTGGGTTGGTTTTGATTTCTCAAAATTATACCTCCAAAAATAAATAA

mRNA sequence

ATGGAGGGGCTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAGGGCGACTTGGCGGAGGAGGCGGAGGGAGTGTGCTTGTGGGATAAGCTTCTTAACAATGGCAGCTTGGAGGATGAGGTTCTGGAGAAGAAGGACTTAGAAGAAGAAGAAGAAGAAGAAGAAGATTCCTTTCTGGAAAGCTTCCATTTTTCTTCCATTAATGGCGGAAAATCAAATGGTGGGTTGGTTTTGATTTCTCAAAATTATACCTCCAAAAATAAATAA

Coding sequence (CDS)

ATGGAGGGGCTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAGGGCGACTTGGCGGAGGAGGCGGAGGGAGTGTGCTTGTGGGATAAGCTTCTTAACAATGGCAGCTTGGAGGATGAGGTTCTGGAGAAGAAGGACTTAGAAGAAGAAGAAGAAGAAGAAGAAGATTCCTTTCTGGAAAGCTTCCATTTTTCTTCCATTAATGGCGGAAAATCAAATGGTGGGTTGGTTTTGATTTCTCAAAATTATACCTCCAAAAATAAATAA

Protein sequence

MEGLFWEELRRRSEGDLAEEAEGVCLWDKLLNNGSLEDEVLEKKDLEEEEEEEEDSFLESFHFSSINGGKSNGGLVLISQNYTSKNK
Homology
BLAST of Cp4.1LG05g09370 vs. NCBI nr
Match: KAG6570691.1 (hypothetical protein SDJN03_29606, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 2.28e-20
Identity = 53/84 (63.10%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 2  EGLFWEELRRRSEGDLAE--------EAEGVCLWDKLLNNGSLED-----EVLEKKDLEE 61
          E  FWEELRRRSEGDL E        E EGVC  DKLL+NGS E+      +LEKKDL+E
Sbjct: 5  EAFFWEELRRRSEGDLPEVAAAVEEEEEEGVCFCDKLLSNGSFEEVLLVEPLLEKKDLDE 64

Query: 62 EEEEEE--DSFLESFHFSSINGGK 70
          EEEEEE  DSF ESFHFSS++G K
Sbjct: 65 EEEEEEQPDSFFESFHFSSMSGRK 88

BLAST of Cp4.1LG05g09370 vs. NCBI nr
Match: KAE8646962.1 (hypothetical protein Csa_020732, partial [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.29e-14
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 2  EGLFWEELRRR-SEGDLAEEAEGVC-LWDKLLNNGS-----LEDEVLEKKDLEEEEEEEE 61
          EG FWEELRRR S+GD   E EGVC  WDKLL+NG+     L + +LE  DLEEE++E+ 
Sbjct: 5  EGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEEDDED- 64

Query: 62 DSFLESFHFSS 65
          DSF E+FHFSS
Sbjct: 65 DSFFETFHFSS 74

BLAST of Cp4.1LG05g09370 vs. ExPASy TrEMBL
Match: A0A0A0KBR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.70e-15
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 2  EGLFWEELRRR-SEGDLAEEAEGVC-LWDKLLNNGS-----LEDEVLEKKDLEEEEEEEE 61
          EG FWEELRRR S+GD   E EGVC  WDKLL+NG+     L + +LE  DLEEE++E+ 
Sbjct: 5  EGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEVLLVEPLLENIDLEEEDDED- 64

Query: 62 DSFLESFHFSSI 66
          DSF E+FHFSSI
Sbjct: 65 DSFFETFHFSSI 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6570691.12.28e-2063.10hypothetical protein SDJN03_29606, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646962.12.29e-1460.56hypothetical protein Csa_020732, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KBR32.70e-1561.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g09370.1Cp4.1LG05g09370.1mRNA