Cp4.1LG05g08650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g08650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NusB domain-containing protein
Location	Cp4.1LG05: 5731043 .. 5736278 (+)
RNA-Seq Expression	Cp4.1LG05g08650
Synteny	Cp4.1LG05g08650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTCCAACTCTCTGTTTCATCTTCTCCACCTTCTTTCTAACCCCTCGTTCCCGGCTTAAACCCTCCACGTTCAGCAGAGGTCAACCGGAATTGGATCAGCCATATGGTTTGAAATTCTCCTGCGCCCAGCATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGTATATCCTTTGCCTTTGGTCACTAACCATTTGAATTCTGAAATGAAGAGGATAGCTTGTGCTTTGATTCTTCATTTCATACTGATTACTTGCTCTGTATTCTTGTAAGCGTAACATTTGCTTTAAAGTTTAAACGCCATCGTTGAATCTTTCTTTTGTAGTCTAAAATTAGGTTAGAACAGATGGCGGTTATATGCAATGTATGGACTATGTTAGAATTCACTATTGGAAATAGAAGCGAAGCTAATATGTTTGATGATAGGTTATGATAAATTTAATGGATAATTTATGCTCTTTTGACGAACTAGACATTAGGTAAGAGTGAATTATGATGCCAAAGAATTGTATTCTTGTTGTTTTGTTTTGTTTTCCTAAAGAAAGTAAAATGGATCAAAGAAAAGTGTGATTTGGGCTTCTTAAATTTTTCAAAAGTAAAGATCTATGCTCCATGATTTCTACATATTTCCAACAAACTAGACTTAACTTGGTATGCTTAATTTTTGTTCTTGCTCTGTCTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCCGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACGCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTTGGTAAAGAAAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTAAGATCCACAACTTCCTTCTCACTTACTATTTCCTTTATATATATATATATATATTTATTTATTTATGGATATCTCTTCTGTCTGCCTATTCAGAAAGTTGGTCTAATCACTAGGAATACGCTCCAAGAATTTGTTTAATTTGAAGACTTGTAATCAATTCTAATCCTGCTAGATTATTCAATCACAGGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGGTAATCTTTGGTCGAGATGTGGTGCTCTGCTGCTCCATATACAATTTGATGCTTTTTTATTGTTCTTGAGAAATAGAAGTCACGTCTTTAACTCAAAAATGACACCAACTTCTTACTTTATCCATTCATACAATTCAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAATCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGGTAAATAGTTTTGTGGCTTTTGTATGTATATTATTTGTCCTTATTTCACTCATTACTTTGTTCTAAAAGCACAATTGGGCATATTATATGCTTCTCTGCTTTCAATTAGAGATGCCTTTTCTTCAAAACATGTACGAAAAGAATTTGAGGGAAAAATCCATCTTCTTCAATTCAAAGTGATATCATGACTCGTGAGATCTGTTGGTATCGTTTTCTTTTAGATGGAGTTTGTAAACAAGCAGTAGAGAACAAAAACTTTTTGACAAACATCTTGAACGCTAACTCTTGGAGACTAACCTAGATTTGGTTCTAAAATCAATAACACATTGCTTGAACTCTTCAAGAAATATGCAAGCGAAAGTTTTACTTCTATTTGTATATCGATCTGGCGATGTTTATCTCTTTATGCACCACATAAATTGTTGTGGCATATCGTAATTACTAACAAACTACTGTCTATAGCTTCTCCTTCTATATGTTTTCATTACAGTTGTAAATACAGTCCTGTCGAACCTCAAAGTCCCATTTCATTGCTTTTAGTGATAGCTAAGTTCTGTTTCCTGCATGACTGTATCTCAGAGGCAGAAGTCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTAAATGTGGTTTCTATTTCCCTGCTTTTGGCAGAGGATGATCTGATGAAAATTGAGTATGAATTTCATGTATTTTATCAATGTTATTATTTATTGGGTGATATAAGGTCAGTCGTCGTCTTCATGGTTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGTTCCTAAAGAGCTTTATGCTACTTTTGTTTTCTGATTTTTCTCCTCTTCTAGTTGGGACTATAAGTTGAACCATTTGCTGTGGAGCTATAATACTCTTGGTCAAAAAGGACCATATAAATAATAATACTTAAAAGGGAATGAGTTCAAAGTCATGGTAGCTACCTACCTAAAATTCATATCTCATGAGTTATTTGGTAACCAGACGTAGTATAGCTTGTGAGAATAATTAAGGTGTCTTGGATTAGATAGTTGTCTTGTGAGAATAATTAAGGTGTGTGCAAGCTAGTCTGAACACTCACGAATATATATTTATATATTATATACACAAAATTCCTCCCATATTGATCTTTGCCTCTTAGTCATAGCATATGCATGCTTTTTGCACGACTTATAGAAATTTGAAAATCTGTATATGATGATGGAAAGGGTGGAACCACAAATCTAACTGCAACATATTTCAATGATGGGTATTGTTGCATCTCTCACGTGAGTGTTGGAAACCCTGAGCTTTGATGGTCAACGATTTGAGCTTAGTGGTAAATGTCTTAGGACTCGGCAAATAGTTAATGGTTTCAAAATGTATTGGATCACCATTCCAGAATATTATATCTTGCGGGTTCTTGACAACAGCCTTTATGTTCTTATGATCCAGACATTGGTGTTGCATGAGTAGGCCAAGATCATGAGCTTGGACTTGCACTTCTTGAATTTAAATTGCGGATTTTAAAATCTTTCTTTAAAATTTATAATGCTGACGTAGATTATACATCTCATGCCTTCATATATTTCAGGACAAGCCAGCAGGACGGATTCTGGAACTTTCTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGTAAATACATCTAAAGCTTCTTACTACAAGATCACAGTTATCCTCTCTTGTATCTGTTGATAGATGTCTGCATCAATCCCGTTTTTTAAAATTTTCCTGGCGATTGATGAAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTTATAAGATATCAAAAATTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCCGGATGGATAAGGAATTAGAGGGCACTTCCCTTCCATGGAAATGGAGTACTACGGAGTTTTAGATGTGTAATTCTTCTAGGGAGATAGTTCCTACAAAAGACTTCGGTTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAAATGAAAATCTGGACTTAGAACATGTATTGTAATCTTTACCTCAGGGTTAAGGTCGATTCCCTGATAAGGAATTTGTTAGATTTTGATGCAAAAAAGGACCAATTAGCAACAGAAATCCACCCAGGCCCTCCAAAACAATGAACAACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACACCGGAAGGATAGCCTTTCCCAACTTCATAGTTACCAAACTACTAAGGCAGTTGCAATTATTACAGAGGATGTATAAAATAAACATTGTTATGTAGCGGAGACTGGCTGTGTTAAGGAACAGTGATTCGGTCGCACACTAGCTAGCGCTGCTAACACGAACAACCAGAGGACTTGTGACCCTATGGAACCCATCTGACCATTCAATCTCCCCAAAATCATACCTCCCACGAGCTTTCTTGAGCGGGGTTATGGTGATGTAGTAAGAAACGTGCTGCCTAAACCAAGAGAAAAGAAGAATCCGAGGCCATACCAATACTTGCACTCCATTGGGAGGATTCAGCTTAAGAAAGTAGATGGCATTTTTGTTTTCTGCTACATTACGAACAGTCCTTTTGATTGTGGTTGTGGATTTGAGGTTTGCAAGTGTAATGGAAGGGTAATTGAGATTGGCAATGGAGGTGGATAGAAATGGTGGACAACAAACAAGTGTTTGTGGAGAAGGGTTCACAATCATCCTGATTTGCTGCTCTGTGTACCCAATATTGCAGAGAAAAATAATGTAATCATTGGCTGTCATGTCGTACACTAGTCCTGGATTTACTGCCTTCAATGGGTTCACTTGGCCACCTCCAATGTCGAATGGATCGGATGGTTTCGTGGATCCACCTGCTAGGATGGTGTTGCGAGTGGAGTCTCTCTTGGTGGCTGAATTATGAATTATGAGCCACGAGTTAGTTAATAGACTGGTTATTTGAAAGTTTAGAGACTAAAATGAAAAGGACGTTTAGAGACTAAAATGAAAAGGACGGGAATGGTTAACCTGTGGTGATGAGGGCAGATCTAATGGCTGCAGGAGACCAGCTTGGATGCAGAGATTTGATGAGGGCAACGACTCCAGAGATGTGAGGGCATGACATTGAAGTCCCTGATTGGAAATTCCATTTGACTTGCCTTTGGCTTTCTCCTTCTGTCGATGTTGGCCGCACTGTTGGAGCAGTTTCTGGAGGCCATGCCGCCAATATGTTCACTCCTGGGGCACTTATGTCTGGCTGCACCATACATAATACCCTCATTAGTGTTCAAAATGACCATCATACACCATTTAACACGTCTGTCGGTGATAGTTTTCTATTATCGATAGATCACTTGATAAAAAAATTTCATGTTTATCGTTGATGGACTATTTCTGTCTATTAGTGATAGATGTTGTGAGATTCTACATCGGTTGAAGAGAGA

mRNA sequence

TCCCTCCAACTCTCTGTTTCATCTTCTCCACCTTCTTTCTAACCCCTCGTTCCCGGCTTAAACCCTCCACGTTCAGCAGAGGTCAACCGGAATTGGATCAGCCATATGGTTTGAAATTCTCCTGCGCCCAGCATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCCGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACGCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTTGGTAAAGAAAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAATCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAGTCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTCTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTTATAAGATATCAAAAATTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCCGGATGGATAAGGAATTAGAGGGCACTTCCCTTCCATGGAAATGGAGTACTACGGAGTTTTAGATGTGTAATTCTTCTAGGGAGATAGTTCCTACAAAAGACTTCGGTTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAAATGAAAATCTGGACTTAGAACATGTATTGTAATCTTTACCTCAGGGTTAAGGTCGATTCCCTGATAAGGAATTTGTTAGATTTTGATGCAAAAAAGGACCAATTAGCAACAGAAATCCACCCAGGCCCTCCAAAACAATGAACAACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACACCGGAAGGATAGCCTTTCCCAACTTCATAGTTACCAAACTACTAAGGCAGTTGCAATTATTACAGAGGATGTATAAAATAAACATTGTTATGTAGCGGAGACTGGCTGTGTTAAGGAACAGTGATTCGGTCGCACACTAGCTAGCGCTGCTAACACGAACAACCAGAGGACTTGTGACCCTATGGAACCCATCTGACCATTCAATCTCCCCAAAATCATACCTCCCACGAGCTTTCTTGAGCGGGGTTATGGTGATGTAGTAAGAAACGTGCTGCCTAAACCAAGAGAAAAGAAGAATCCGAGGCCATACCAATACTTGCACTCCATTGGGAGGATTCAGCTTAAGAAAGTAGATGGCATTTTTGTTTTCTGCTACATTACGAACAGTCCTTTTGATTGTGGTTGTGGATTTGAGGTTTGCAAGTGTAATGGAAGGGTAATTGAGATTGGCAATGGAGGTGGATAGAAATGGTGGACAACAAACAAGTGTTTGTGGAGAAGGGTTCACAATCATCCTGATTTGCTGCTCTGTGTACCCAATATTGCAGAGAAAAATAATGTAATCATTGGCTGTCATGTCGTACACTAGTCCTGGATTTACTGCCTTCAATGGGTTCACTTGGCCACCTCCAATGTCGAATGGATCGGATGGTTTCGTGGATCCACCTGCTAGGATGGTGTTGCGAGTGGAGTCTCTCTTGGTGGCTGAATTATGAATTATGAGCCACGAGTTAGTTAATAGACTGGTTATTTGAAAGTTTAGAGACTAAAATGAAAAGGACGTTTAGAGACTAAAATGAAAAGGACGGGAATGGTTAACCTGTGGTGATGAGGGCAGATCTAATGGCTGCAGGAGACCAGCTTGGATGCAGAGATTTGATGAGGGCAACGACTCCAGAGATGTGAGGGCATGACATTGAAGTCCCTGATTGGAAATTCCATTTGACTTGCCTTTGGCTTTCTCCTTCTGTCGATGTTGGCCGCACTGTTGGAGCAGTTTCTGGAGGCCATGCCGCCAATATGTTCACTCCTGGGGCACTTATGTCTGGCTGCACCATACATAATACCCTCATTAGTGTTCAAAATGACCATCATACACCATTTAACACGTCTGTCGGTGATAGTTTTCTATTATCGATAGATCACTTGATAAAAAAATTTCATGTTTATCGTTGATGGACTATTTCTGTCTATTAGTGATAGATGTTGTGAGATTCTACATCGGTTGAAGAGAGA

Coding sequence (CDS)

ATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCCGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACGCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTTGGTAAAGAAAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAATCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAGTCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTCTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGA

Protein sequence

MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEVLAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVST

Homology

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy Swiss-Prot
Match: Q18B61 (Transcription antitermination protein NusB OS=Clostridioides difficile (strain 630) OX=272563 GN=nusB PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-06
Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           KID++I    K+    R+  +++SIL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 274 RIINGCLRTFVKDI 286
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy Swiss-Prot
Match: Q8GIR7 (Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=nusB PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-05
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    
Sbjct: 129 RIDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGR 188

Query: 274 RIINGCLR 280
           R ING LR
Sbjct: 189 RFINGVLR 196

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy Swiss-Prot
Match: Q5N1J7 (Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=nusB PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-05
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    
Sbjct: 129 RIDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGR 188

Query: 274 RIINGCLR 280
           R ING LR
Sbjct: 189 RFINGVLR 196

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy Swiss-Prot
Match: A7GWZ7 (Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.92) OX=360105 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.8e-05
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 202 VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELSILHLAMSEITVVGTRHQIVIN 261
           +  ++ +D+  LK   +D+++    K+K   R  I+EL+IL L + E+   GT   ++IN
Sbjct: 43  IQALETFDAICLKKGELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIIN 102

Query: 262 EAVDLAKRFCDGAAPRIINGCL 279
           EA++LAK     +AP+ ING L
Sbjct: 103 EAIELAKELGGDSAPKFINGVL 124

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy Swiss-Prot
Match: B1WXY6 (Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=nusB PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.1e-05
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 214 KIDKVIPSTWKDKPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 273
           +ID+ + +  KD    R+  ++  IL LA++EI  +    ++ INEAV+LAKR+ D    
Sbjct: 133 EIDEQLEAVLKDWQLKRLAKIDQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGY 192

Query: 274 RIINGCLRTFVKDIQ 287
           R ING LR F   I+
Sbjct: 193 RFINGVLRRFTDHIK 207

[Close]

BLAST of Cp4.1LG05g08650 vs. NCBI nr
Match: XP_023532267.1 (uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 579 bits (1493), Expect = 3.99e-208
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60
           MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV 180

Query: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA 240
           LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA
Sbjct: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA 240

Query: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300
           MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Sbjct: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300

[Close]

BLAST of Cp4.1LG05g08650 vs. NCBI nr
Match: KAG6605513.1 (hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035451.1 nusB [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 573 bits (1477), Expect = 1.10e-205
Identity = 298/301 (99.00%), Postives = 299/301 (99.34%), Query Frame = 0


Query: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60
           MVELVSMVVLPTRLDNVIATRPNFHFSS VSGICRFPFPTSAIVPYVKESVPRLCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEI 180

Query: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA 240
           LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLA
Sbjct: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLA 240

Query: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300
           MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Sbjct: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300

[Close]

BLAST of Cp4.1LG05g08650 vs. NCBI nr
Match: XP_023007062.1 (uncharacterized protein LOC111499665 [Cucurbita maxima])

HSP 1 Score: 571 bits (1472), Expect = 6.34e-205
Identity = 297/301 (98.67%), Postives = 298/301 (99.00%), Query Frame = 0


Query: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60
           MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGIC FPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEI 180

Query: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA 240
           LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLA
Sbjct: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLA 240

Query: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300
           MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Sbjct: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300

[Close]

BLAST of Cp4.1LG05g08650 vs. NCBI nr
Match: XP_022948088.1 (uncharacterized protein LOC111451776 [Cucurbita moschata])

HSP 1 Score: 570 bits (1468), Expect = 2.58e-204
Identity = 296/301 (98.34%), Postives = 298/301 (99.00%), Query Frame = 0


Query: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60
           MVELVS+VVLPTRLDNVIATRPNFHFSS VSGICRFPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEI 180

Query: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA 240
           LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLA
Sbjct: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLA 240

Query: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300
           MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Sbjct: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300

[Close]

BLAST of Cp4.1LG05g08650 vs. NCBI nr
Match: TYK21741.1 (NusB/RsmB/TIM44 [Cucumis melo var. makuwa])

HSP 1 Score: 470 bits (1209), Expect = 5.52e-164
Identity = 239/285 (83.86%), Postives = 261/285 (91.58%), Query Frame = 0


Query: 15  DNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKE 74
           D VI TRPNFHFS+H+SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E
Sbjct: 71  DKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEE 130

Query: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134
            SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLN+R E G
Sbjct: 131 RSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESG 190

Query: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEVLAAPPKVVYSKLIL 194
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAE+LAAPPK+VYSKLIL
Sbjct: 191 YEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLIL 250

Query: 195 RFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLAMSEITVVGTRHQIV 254
           RFTRKLLVAVVD WD+  LKI+KVIP TWK+KPAGRILEL ILHLAMSEITV+GTRHQIV
Sbjct: 251 RFTRKLLVAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIV 310

Query: 255 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV 299
           INEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Sbjct: 311 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEV 355

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy TrEMBL
Match: A0A6J1KXJ4 (uncharacterized protein LOC111499665 OS=Cucurbita maxima OX=3661 GN=LOC111499665 PE=3 SV=1)

HSP 1 Score: 571 bits (1472), Expect = 3.07e-205
Identity = 297/301 (98.67%), Postives = 298/301 (99.00%), Query Frame = 0


Query: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60
           MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGIC FPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEI 180

Query: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA 240
           LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLA
Sbjct: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLA 240

Query: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300
           MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Sbjct: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy TrEMBL
Match: A0A6J1G8E0 (uncharacterized protein LOC111451776 OS=Cucurbita moschata OX=3662 GN=LOC111451776 PE=3 SV=1)

HSP 1 Score: 570 bits (1468), Expect = 1.25e-204
Identity = 296/301 (98.34%), Postives = 298/301 (99.00%), Query Frame = 0


Query: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60
           MVELVS+VVLPTRLDNVIATRPNFHFSS VSGICRFPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEV 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEI 180

Query: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLA 240
           LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLA
Sbjct: 181 LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLA 240

Query: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300
           MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Sbjct: 241 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS 300

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy TrEMBL
Match: A0A5D3DDJ4 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001130 PE=3 SV=1)

HSP 1 Score: 470 bits (1209), Expect = 2.67e-164
Identity = 239/285 (83.86%), Postives = 261/285 (91.58%), Query Frame = 0


Query: 15  DNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKE 74
           D VI TRPNFHFS+H+SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E
Sbjct: 71  DKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEE 130

Query: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134
            SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLN+R E G
Sbjct: 131 RSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESG 190

Query: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEVLAAPPKVVYSKLIL 194
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAE+LAAPPK+VYSKLIL
Sbjct: 191 YEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLIL 250

Query: 195 RFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLAMSEITVVGTRHQIV 254
           RFTRKLLVAVVD WD+  LKI+KVIP TWK+KPAGRILEL ILHLAMSEITV+GTRHQIV
Sbjct: 251 RFTRKLLVAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIV 310

Query: 255 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV 299
           INEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Sbjct: 311 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEV 355

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy TrEMBL
Match: A0A1S3BNR2 (uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 470 bits (1209), Expect = 9.86e-164
Identity = 239/285 (83.86%), Postives = 261/285 (91.58%), Query Frame = 0


Query: 15  DNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKE 74
           D VI TRPNFHFS+H+SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E
Sbjct: 108 DKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEE 167

Query: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134
            SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLN+R E G
Sbjct: 168 RSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESG 227

Query: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEVLAAPPKVVYSKLIL 194
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAE+LAAPPK+VYSKLIL
Sbjct: 228 YEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLIL 287

Query: 195 RFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLAMSEITVVGTRHQIV 254
           RFTRKLLVAVVD WD+  LKI+KVIP TWK+KPAGRILEL ILHLAMSEITV+GTRHQIV
Sbjct: 288 RFTRKLLVAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIV 347

Query: 255 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV 299
           INEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Sbjct: 348 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEV 392

[Close]

BLAST of Cp4.1LG05g08650 vs. ExPASy TrEMBL
Match: A0A1S4DXQ5 (uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 461 bits (1185), Expect = 1.26e-161
Identity = 234/278 (84.17%), Postives = 256/278 (92.09%), Query Frame = 0


Query: 22  PNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVS 81
           PNFHFS+H+SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VS
Sbjct: 15  PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 74

Query: 82  SIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTS 141
           SIE IPKIDKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLN+R E GYEFDKTS
Sbjct: 75  SIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTS 134

Query: 142 LMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEVLAAPPKVVYSKLILRFTRKLL 201
           LMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAE+LAAPPK+VYSKLILRFTRKLL
Sbjct: 135 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLL 194

Query: 202 VAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSILHLAMSEITVVGTRHQIVINEAVDL 261
           VAVVD WD+  LKI+KVIP TWK+KPAGRILEL ILHLAMSEITV+GTRHQIVINEAVDL
Sbjct: 195 VAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 254

Query: 262 AKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV 299
           AKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Sbjct: 255 AKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEV 292

[Close]

BLAST of Cp4.1LG05g08650 vs. TAIR 10
Match: AT4G26370.1 (antitermination NusB domain-containing protein )

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-90
Identity = 168/244 (68.85%), Postives = 198/244 (81.15%), Query Frame = 0


Query: 58  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGS 117
           +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGS
Sbjct: 57  SSLRLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGS 116

Query: 118 DPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIE 177
           DP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S IE
Sbjct: 117 DPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIE 176

Query: 178 AEVLAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELSIL 237
           AEVL+APPK+VYSKL+LRF +KLL AVVD+WDSHV+ I+K+ P  WK  PAGRILE SIL
Sbjct: 177 AEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSIL 236

Query: 238 HLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVK 297
           HLAMSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD   T +  A  +K
Sbjct: 237 HLAMSEVAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTSTPQALELK 296

Query: 298 EVVS 301
           + VS
Sbjct: 297 QEVS 300

[Close]

BLAST of Cp4.1LG05g08650 vs. TAIR 10
Match: AT4G26370.2 (antitermination NusB domain-containing protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-37
Identity = 78/119 (65.55%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 58  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGS 117
           +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGS
Sbjct: 57  SSLRLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGS 116

Query: 118 DPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI 177
           DP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S I
Sbjct: 117 DPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKI 175

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g08650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18B61	1.2e-06	40.54	Transcription antitermination protein NusB OS=Clostridioides difficile (strain 6...	[more]
Q8GIR7	1.4e-05	42.65	Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PC...	[more]
Q5N1J7	1.4e-05	42.65	Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 271...	[more]
A7GWZ7	1.8e-05	35.37	Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.9...	[more]
B1WXY6	3.1e-05	38.67	Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain AT...	[more]

BLAST of Cp4.1LG05g08650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532267.1	3.99e-208	100.00	uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]	[more]
KAG6605513.1	1.10e-205	99.00	hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023007062.1	6.34e-205	98.67	uncharacterized protein LOC111499665 [Cucurbita maxima]	[more]
XP_022948088.1	2.58e-204	98.34	uncharacterized protein LOC111451776 [Cucurbita moschata]	[more]
TYK21741.1	5.52e-164	83.86	NusB/RsmB/TIM44 [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG05g08650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXJ4	3.07e-205	98.67	uncharacterized protein LOC111499665 OS=Cucurbita maxima OX=3661 GN=LOC111499665...	[more]
A0A6J1G8E0	1.25e-204	98.34	uncharacterized protein LOC111451776 OS=Cucurbita moschata OX=3662 GN=LOC1114517...	[more]
A0A5D3DDJ4	2.67e-164	83.86	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G0011...	[more]
A0A1S3BNR2	9.86e-164	83.86	uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DXQ5	1.26e-161	84.17	uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cp4.1LG05g08650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26370.1	1.4e-90	68.85	antitermination NusB domain-containing protein	[more]
AT4G26370.2	1.1e-37	65.55	antitermination NusB domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 301..301
IPR035926	NusB-like superfamily	GENE3D	1.10.940.10		coord: 98..297 e-value: 4.2E-20 score: 74.0
IPR035926	NusB-like superfamily	SUPERFAMILY	48013	NusB-like	coord: 96..287
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 197..283 e-value: 2.7E-12 score: 47.1
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 67..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g08650.1	Cp4.1LG05g08650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003723	RNA binding