Cp4.1LG05g08570 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g08570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptioninactive protein RESTRICTED TEV MOVEMENT 2-like
LocationCp4.1LG05: 5570938 .. 5571189 (+)
RNA-Seq ExpressionCp4.1LG05g08570
SyntenyCp4.1LG05g08570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTGTGGCAAGTGTATCGCATTCCGCAAGGAAATCGATATTCCAGCGGACGTCGATATAGACAAGATCTCTGCCAAGTTCGAGAGAGGCATACTCTTAGTGAGGCAGCCCATGAAAGCCTCCACTCAAGGGAGAAGAGGAGAATGGTTGAGGAGAAACATGGTGAATTTGGCTCTTGGGGGTGCTACTGCTTTTGCTTTTGTCATTGTGTATCTCAATCTTACTAAGGAATCAACATCTAGTTTATGA

mRNA sequence

ATGAACTGTGGCAAGTGTATCGCATTCCGCAAGGAAATCGATATTCCAGCGGACGTCGATATAGACAAGATCTCTGCCAAGTTCGAGAGAGGCATACTCTTAGTGAGGCAGCCCATGAAAGCCTCCACTCAAGGGAGAAGAGGAGAATGGTTGAGGAGAAACATGGTGAATTTGGCTCTTGGGGGTGCTACTGCTTTTGCTTTTGTCATTGTGTATCTCAATCTTACTAAGGAATCAACATCTAGTTTATGA

Coding sequence (CDS)

ATGAACTGTGGCAAGTGTATCGCATTCCGCAAGGAAATCGATATTCCAGCGGACGTCGATATAGACAAGATCTCTGCCAAGTTCGAGAGAGGCATACTCTTAGTGAGGCAGCCCATGAAAGCCTCCACTCAAGGGAGAAGAGGAGAATGGTTGAGGAGAAACATGGTGAATTTGGCTCTTGGGGGTGCTACTGCTTTTGCTTTTGTCATTGTGTATCTCAATCTTACTAAGGAATCAACATCTAGTTTATGA

Protein sequence

MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKASTQGRRGEWLRRNMVNLALGGATAFAFVIVYLNLTKESTSSL
Homology
BLAST of Cp4.1LG05g08570 vs. NCBI nr
Match: XP_023533468.1 (uncharacterized protein LOC111795344 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158 bits (399), Expect = 1.53e-47
Identity = 83/95 (87.37%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1   MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKASTQGRRGEWL--------- 60
           MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKASTQGRRGEWL         
Sbjct: 58  MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKASTQGRRGEWLKASTQGRRG 117

Query: 61  ---RRNMVNLALGGATAFAFVIVYLNLTKESTSSL 83
              RRNMVNLALGGATAFAFVIVYLNLTKESTSSL
Sbjct: 118 EWLRRNMVNLALGGATAFAFVIVYLNLTKESTSSL 152

BLAST of Cp4.1LG05g08570 vs. NCBI nr
Match: KAG6590271.1 (Heat shock protein beta-11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (293), Expect = 1.50e-31
Identity = 63/82 (76.83%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 1   MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKASTQG----RRGEWLRRNMV 60
           +NCGKCI FRKEIDIPADVDI KISAK E GIL VRQP KAST+G    RRGEWLRRNMV
Sbjct: 56  VNCGKCIGFRKEIDIPADVDIFKISAKVEGGILSVRQPTKASTEGSGCVRRGEWLRRNMV 115

Query: 61  NLALGGATAFAFVIVYLNLTKE 78
           NLALG A  F  VIVYLNLT  
Sbjct: 116 NLALGAAAVF--VIVYLNLTNN 135

BLAST of Cp4.1LG05g08570 vs. NCBI nr
Match: KAG7033445.1 (hypothetical protein SDJN02_07501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102 bits (254), Expect = 2.63e-25
Identity = 53/70 (75.71%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 1   MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKASTQGR----RGEWLRRNMV 60
           +NCGKCI FRKEIDIPADVDI KISAK E GIL VRQPMKAS++G     RGEWLRRNMV
Sbjct: 56  VNCGKCIGFRKEIDIPADVDIFKISAKVEGGILSVRQPMKASSEGSGCGGRGEWLRRNMV 115

Query: 61  NLALGGATAF 66
           NLAL    AF
Sbjct: 116 NLALWAMKAF 125

BLAST of Cp4.1LG05g08570 vs. NCBI nr
Match: XP_022960896.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 3.11e-18
Identity = 53/107 (49.53%), Postives = 59/107 (55.14%), Query Frame = 0

Query: 1   MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMK-------------------- 60
           +  GK + F  EIDIP D D +KISA+FE+GIL V QP K                    
Sbjct: 58  LTSGKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAES 117

Query: 61  -----ASTQG----RRGEWLRRNMVNLALGGATAFAFVIVYLNLTKE 78
                AST+G    RRGEWLRRNMVNLALG A  F  VIVYLNLT  
Sbjct: 118 QPPPTASTRGIGRVRRGEWLRRNMVNLALGAAAVF--VIVYLNLTNN 162

BLAST of Cp4.1LG05g08570 vs. NCBI nr
Match: KAG6590269.1 (15.7 kDa heat shock protein, peroxisomal, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.31e-17
Identity = 53/107 (49.53%), Postives = 58/107 (54.21%), Query Frame = 0

Query: 1   MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMK-------------------- 60
           +  GK + F  EIDIP D D +KISAK E+GIL V QP K                    
Sbjct: 76  LTSGKWLRFLDEIDIPEDADTNKISAKLEKGILYVTQPRKTSAVSSNNPPAQPSEPKAES 135

Query: 61  -----ASTQG----RRGEWLRRNMVNLALGGATAFAFVIVYLNLTKE 78
                AST+G    RRGEWLRRNMVNLALG A  F  VIVYLNLT  
Sbjct: 136 QPPPTASTRGIGRVRRGEWLRRNMVNLALGAAAVF--VIVYLNLTNN 180

BLAST of Cp4.1LG05g08570 vs. ExPASy TrEMBL
Match: A0A6J1H8V9 (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucurbita moschata OX=3662 GN=LOC111461558 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.51e-18
Identity = 53/107 (49.53%), Postives = 59/107 (55.14%), Query Frame = 0

Query: 1   MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMK-------------------- 60
           +  GK + F  EIDIP D D +KISA+FE+GIL V QP K                    
Sbjct: 58  LTSGKWLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQPSEPKAES 117

Query: 61  -----ASTQG----RRGEWLRRNMVNLALGGATAFAFVIVYLNLTKE 78
                AST+G    RRGEWLRRNMVNLALG A  F  VIVYLNLT  
Sbjct: 118 QPPPTASTRGIGRVRRGEWLRRNMVNLALGAAAVF--VIVYLNLTNN 162

BLAST of Cp4.1LG05g08570 vs. ExPASy TrEMBL
Match: A0A6J1H8P0 (heat shock protein beta-11-like OS=Cucurbita moschata OX=3662 GN=LOC111461559 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.46e-15
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  MNCGKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKAS 42
          +NCGKCI FRKEIDIPADVDI KISAK E GIL VRQPMKAS
Sbjct: 58 VNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS 99

BLAST of Cp4.1LG05g08570 vs. ExPASy TrEMBL
Match: A0A1S3BQ02 (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.42e-07
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 4  GKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKAS 42
          GK + F KEIDIPAD D DKISAK E GIL V+QP K S
Sbjct: 61 GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLS 99

BLAST of Cp4.1LG05g08570 vs. ExPASy TrEMBL
Match: A0A5A7UQF5 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00910 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.67e-07
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 4   GKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKAST 43
           GK + F KEIDIPAD D DKISAK E GIL V+QP K  T
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPT 100

BLAST of Cp4.1LG05g08570 vs. ExPASy TrEMBL
Match: A0A5D3CDK6 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00820 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.67e-07
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 4   GKCIAFRKEIDIPADVDIDKISAKFERGILLVRQPMKAST 43
           GK + F KEIDIPAD D DKISAK E GIL V+QP K  T
Sbjct: 61  GKWLRFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPT 100

BLAST of Cp4.1LG05g08570 vs. TAIR 10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 0

Query: 5  KCIAFRKEIDIPADVDIDKISAKFERGILLVRQP 39
          K I FRKE  IP ++D+D +SAKFE   L+VR P
Sbjct: 66 KWIRFRKEFPIPPNIDVDSVSAKFEGANLVVRLP 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023533468.11.53e-4787.37uncharacterized protein LOC111795344 [Cucurbita pepo subsp. pepo][more]
KAG6590271.11.50e-3176.83Heat shock protein beta-11, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7033445.12.63e-2575.71hypothetical protein SDJN02_07501, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022960896.13.11e-1849.53inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata][more]
KAG6590269.11.31e-1749.5315.7 kDa heat shock protein, peroxisomal, partial [Cucurbita argyrosperma subsp.... [more]
Match NameE-valueIdentityDescription
A0A6J1H8V91.51e-1849.53inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1H8P03.46e-1585.71heat shock protein beta-11-like OS=Cucurbita moschata OX=3662 GN=LOC111461559 PE... [more]
A0A1S3BQ022.42e-0769.23pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3... [more]
A0A5A7UQF52.67e-0767.50Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3CDK62.67e-0767.50Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
AT2G27140.12.8e-0455.88HSP20-like chaperones superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 2..49
e-value: 6.0E-7
score: 31.3
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 9..46
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 9..36
e-value: 1.814E-7
score: 42.5413

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g08570.1Cp4.1LG05g08570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane