Cp4.1LG05g08230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g08230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	double-stranded RNA-binding protein 2-like
Location	Cp4.1LG05: 5080092 .. 5085285 (-)
RNA-Seq Expression	Cp4.1LG05g08230
Synteny	Cp4.1LG05g08230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAATTCAAAGTTTAAATTTAATTATGAAGAGTGAACAGAAAATCTTTGAAAGAGATCACATCCCATGCAGCTGAAGGTTGACTCAGAGCAACATTAAATTCCCAATCCCCAACTTTTTATTCCGATGAAATATCGATTACCCACTTTCTTTTGCTTCAATTTTTGCTCCAATTTTTGTCTGGCCGATGAAATCCTTTGCATCGTCGGACTTCACTCTCCGGCGACCACTGCGGCGGTCCGATTTCCTCTTCCGCCTCCGGCTACCGTTCCTATAGGTGATTGAGGGATAAAAGGGGGCTGAAATCGGAGGCGAAATGTATAAAAATCAGCTTCAGGAATTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCGGTTAGGGAAGGGCCTGATCATGCTCCGAGGTTCAAAGCCTCCGTTAACTTTAACGGCGAGATCTTCGAAAGCCCTAACCATTGCCCTACTCTCCGGCTGGCTGAACACTCCGCGGCCGAGGTTGCTCTCAATTCCCTCGCGAATCGCGGTCCATCTCACTCGCTTGCCGCTCGGATCCTGGTGTGTATTCTTACACTCATTGTGCCGATTAGTTTCCGCCGTTGTTGCTGTTGCGACTATTGTGTTTCACGATGTGTTTGATTTCGTTCTTGTTGTTCTTCTTGGTCTTTTGTTCTAGTAGCTATTGCAAACTAGAGTAGGTCGCATTACTGTGTGCGAGTTCTATGTTTCCCTTCCTTGCCAGTCTTCAAACCTACGATCGCAGTTCAAAATCTGATGCGAAAATTGGAGTTTCGATTTTATTCTTGAGTTCGGTTTCAGGTGATCGCCTGAACGTTCCGGCTAGCGACCTCTATCGGCCGGAATGGAGTCGGCGATTAAGATAATCTGGTTCTTTCAGAATTTCACGAATAACCTTTCATTTTTCACCTCTTTTCCTCTAATGGCTCATCAAATTCCAAATCCAATTGTTTTTTCTGACGAAGCCGACACCGTAGACTTTAAATTCAAGAAACAGAGTACATTTTAGGAAACTTATTGACGGAAGCCTTCAACATTGATTGATATCTGCGATTGTTTTGTCGTTATCAATATCATTAAGGGACCAGTTGCATACGTGATTTTCTGTGGGGATGGTTGGTGATATTAAGTTCAGTTATAACTTGTCCTAGTAGCTTTTCCCCTTGCACGCCCCTGAAAGCCTCTGTATTCCCAGTTTTTTGACAATAACATGGCTGATTGAGCTGAAAGCTGTGGCAATTTATGTATGATTGCAATTCTACAGAGTTTTTTTTGCTTGTTTTTGTAATGTACATTTAGATGTGAACTCAAATTGTTGACCTTCTTGCTCAACTCTGTATCTTTGGTTTAGTGATAAAGTAATATATGGTAATCGGCAGGACGAGACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTTGGGGCTCCATTGCCACAGTATACAACAGTCCGGTCAGGACTTGGACATCTGCCTGTTTTTACAGGGTCTATAGAATTGGCTGGAATCACGTTCACTGGGGAACCTGCGAAGAACAAGAAACAGGCAGAAAAGAATGCAGCCTTGGCAGCTTGGTCGTCTTTAAAACAATGTGAGTTTTGTTTCTGGATTTTTCGTCCCGATCATTTAAATCCATCTTAGAAGATCATGTAGCTAGCATAACCTTGGTGAATGTACTGTGGTTTAGCCCTTGTTGAACTAGAAAATGTTGCATATGCCACTTTCTGTGACACCTCTTATCCCCCCAGATTCAATATTTCTTAGCAGTCTTTAAGATTTTCAATCAACCCATTGCATTTTACGACCTTCATACATCTATGTCCTCGAGTTCTAAAGATACGATATTAAAGCCATTGTTTGGATATGATGTGAATCACGATTATTATTTGTGGAAGAAGATGTTGCCATGGATGTGCACTGATATATCAATTGTCGTTAAACATTTGGATAATGTAGTGTGTTTTTTCTGTCCAGTGGCAAAAGAAGCGGCCAGTTCATCGGAAGTTGAAAGCAATGACGAGCCAGAGCAGGTTATGATAGCTCGGGCGTTATTGAACTATCGTTTGAAGGAGAAGATGTTCAAGACTAACCCAAATGTCCCAATGCCATTCCCAAAGAAGCTTTCATTTCAAAGTCCAAGGGCAACTAGTCCGCAACCACCCCCCGCTACCACATCCAAAATTCTTCCTTTCATTTGCAAAAGGCCAATTTCTCGAAGCAGACTACCACCAACAGAATACAACAGCCCTACATTACCATCACATCCTCTTACAGCCTATGGGAGTCATCCTCAAAAGTTCCCTGCACCTGGAGCCGTTCCTTATGTCCCGATTCGACAATATAGGATGCCTTGCCGGGGAATTGTACCACCTGTGACTATAAGAACTGCTGTGCCTGTTTATGCTGCACCGCCATTCGCACAACCACCCAATGTACACTCCCAGGTGCGAACTTCCCAACACATTCGAATTGTCCCCCCTGTCTCAGTTAGACAAGCTATTCCAGTTTTTGCTGCTCCTCCACCATTGTCCAGAAAGGAGTTCTCAGCTCTTCACAAAGGAGATTCCCTCACTGTCCATAAACAAGATCCGTCAACCACTACCGTAGAGGGTTCTGCCAATACCTCGAAAGCAGATCATTCAGCTGCATCTGGCCCAGTCTTGCTCACGACAACTTCTAATCAAGTACCGGAAACTCAGAGCCCAAATGCAACCAGTTTGGATGAAACCAAAACTGTTCAGCATCTGAAACAACTCAAAATCCAATAGATTGTTAACTTCGTTGGATATATACCATAAGATGTGACAATCTCAGATCATCTAGTGTTGTTAGATTAATGTTCTGTTTAAGCGTCGTATGTACTGTCTCGACAGTTTTGCCTTTGCCATATATGACCAATAGTTAGCCCCAAGGTAAACGAGAGGGCACAATTTCCTTGTAATCGGCTTTATCCAGTGGCAGTAATGTTAATTGTGAAGTCCTACCCCTTTAGCTATTTACCCAAAAAATTAAGTCATCTATTCATAAAATCTTAGTTCCCTTGGCATTGCAGGCTCACAAAGCTGAGGCAAGTGTTAGAACTGTCGAAAACGATTCGTGGGTTGAGCTCCATATCTTACAGGTACTATTCCCTTACAATTTTGTAATGTTTTTGCATCACTTCTCCATCTTTCTGACTCTAATATTGGGTAGGAAGACACAGAACAAAAGGTCTTAATTCTTAAAGCTTATTAGAAGATACAAAATCATGAAATCAAATAGAATGGATGGTAAGATTAGATTGTCAGAAATAAGGTAAAGATTTGCATGCTCTTAGACGTATACTGTCATAATGATCGAGAAACTATAATGAGATTAAAAAAAAAGTCAGAAAGTGGTCGAAAGTTGTCTGAAAGTAAGGGGTTAGTGGGGTGACAGGGAGTGTCTATTTCTCATCCTAACGAGAAAAAAACACAATAATTTCACCCTCCAAATCATAGTGTTGTAAACGCTAGAAGCCTTAAATATTGACCACATTTTAGTTGCCTATGACCGTTTACTTCTATTTGTTTTCTTCTTTTACTTTTCTATGATTGGATATGCTAGTATCCCTCAATATTGTGTGGTGCCTTGAATTCTGTGGTTTTGATTTGTCTTGTTTTGGGAAGTTTGGTTTAAGCTGAAGTAAGTTCATAAACTTGAGCGTTCAAATGGGTTGAACTGTATGATGATGAACAGGGCAGTCTTGAAATCCTTGGTTCATAGTCTGATATTGTTAACCTCTAAAGCTTTGAACCCATCAGCTTAATCTCAGTATTAAAAAGCGAAAGAATAAAGTGATTACTGATAGATAGATCCATTGCAGGAATCAAGAAAAATGAGATTTCTAATTTCAGGTGTCATGTCAAATTCGGTGGAAAAAGAATTGACATGAACAACACCTTTTGTTTTTTAGTAACATTGTTGAAGACATTCCAATTGCCCTGGATGAAAACACGAAACACCACACCCACTTTACTTTCTGGTAACCTACGTGTTAACGATGGGATTTGTTTCTAGTGGCTGCCTCTGCTAATACCCTTTGGATTATTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAGGCCAGGCAATATCCAAACTGGTTGTTGTGTGTTTGTTGTTTTCTCCATTTTGTGTGTGTAAATTATTTGTGTTGAAAGGGAATCAAAAGGGACAAAAAGGAGGGGAATAGGAGTTGCTTGCACATAACGTCTCGAGTTCTGAATTGCAATTCAATGCCCTTAGAGATGTCCACAAGGTGGGGGCAGTAGCGTTCCAATGCCCCACAAGGAATTTTTCTCCATTTCTTAATGGTGTGTGAGTAGATATGTTTAGAACAGTGTAGAGAATGAATATTCTCTTTCCTTAGCCTCGTTTAGCTAATAGGGAGAAATCTTTTATACTCGATTATCCTTTTGACCATGTTCGTGGCGGGGTGGCACGTTTCCACCCAATGGAAAAAAGGAAGGGAAGATAAGAGTGGTCTAATATGGTAGAACAATTCCCCCAACTACCCATTGCCCAAAACAAACTCTCAAACTCTCCATTTGCATTTGGGCATTCAAAGTTCACTTTTTATGGCGAAAACAACCGTGCCTTGAAATGCCCAATATGATGCTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATAGGCTAAAATAGTGAGATAAGTGTGAGAAAGAAGCAAAGTTATTGAAGTGGGACCAAATCTCCACTTGAAGGACACCAACTCCTCAAAGCAATGCCACGTCAACCCCTCTCTCACACAACAACCATTTGTTTTTTCTTTTCTATCTTTCTAAACAATGTGTTATTTTATGGATCTCCCACAGACATATTGGGCCCACATTTGGGCCCATCGGCCCACTCCACATATATTATTCCTTTCCTATCACAAAAGCAAGCAACGCCAGATGGAACCCTCCACCACCTCTCTCTCTCACATTATATGTTTTGTGTTGAAGAAGAAAAAAAAGGGTTTTAGGGTTATAGAGGGAGAGGAGGAGGACAAAGTGGAAGAATGTTAATCCCATCACCTAAAGTTTTGTAAAGGAAAGTTCTTTCCTCTTTCTATCTTTAACGAAGTTGC

mRNA sequence

TCAAATTCAAAGTTTAAATTTAATTATGAAGAGTGAACAGAAAATCTTTGAAAGAGATCACATCCCATGCAGCTGAAGGTTGACTCAGAGCAACATTAAATTCCCAATCCCCAACTTTTTATTCCGATGAAATATCGATTACCCACTTTCTTTTGCTTCAATTTTTGCTCCAATTTTTGTCTGGCCGATGAAATCCTTTGCATCGTCGGACTTCACTCTCCGGCGACCACTGCGGCGGTCCGATTTCCTCTTCCGCCTCCGGCTACCGTTCCTATAGGTGATTGAGGGATAAAAGGGGGCTGAAATCGGAGGCGAAATGTATAAAAATCAGCTTCAGGAATTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCGGTTAGGGAAGGGCCTGATCATGCTCCGAGGTTCAAAGCCTCCGTTAACTTTAACGGCGAGATCTTCGAAAGCCCTAACCATTGCCCTACTCTCCGGCTGGCTGAACACTCCGCGGCCGAGGTTGCTCTCAATTCCCTCGCGAATCGCGGTCCATCTCACTCGCTTGCCGCTCGGATCCTGGACGAGACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTTGGGGCTCCATTGCCACAGTATACAACAGTCCGGTCAGGACTTGGACATCTGCCTGTTTTTACAGGGTCTATAGAATTGGCTGGAATCACGTTCACTGGGGAACCTGCGAAGAACAAGAAACAGGCAGAAAAGAATGCAGCCTTGGCAGCTTGGTCGTCTTTAAAACAATTGGCAAAAGAAGCGGCCAGTTCATCGGAAGTTGAAAGCAATGACGAGCCAGAGCAGGTTATGATAGCTCGGGCGTTATTGAACTATCGTTTGAAGGAGAAGATGTTCAAGACTAACCCAAATGTCCCAATGCCATTCCCAAAGAAGCTTTCATTTCAAAGTCCAAGGGCAACTAGTCCGCAACCACCCCCCGCTACCACATCCAAAATTCTTCCTTTCATTTGCAAAAGGCCAATTTCTCGAAGCAGACTACCACCAACAGAATACAACAGCCCTACATTACCATCACATCCTCTTACAGCCTATGGGAGTCATCCTCAAAAGTTCCCTGCACCTGGAGCCGTTCCTTATGTCCCGATTCGACAATATAGGATGCCTTGCCGGGGAATTGTACCACCTGTGACTATAAGAACTGCTGTGCCTGTTTATGCTGCACCGCCATTCGCACAACCACCCAATGTACACTCCCAGGTGCGAACTTCCCAACACATTCGAATTGTCCCCCCTGTCTCAGTTAGACAAGCTATTCCAGTTTTTGCTGCTCCTCCACCATTGTCCAGAAAGGAGTTCTCAGCTCTTCACAAAGGAGATTCCCTCACTGTCCATAAACAAGATCCGTCAACCACTACCGTAGAGGGTTCTGCCAATACCTCGAAAGCAGATCATTCAGCTGCATCTGGCCCAGTCTTGCTCACGACAACTTCTAATCAAGTACCGGAAACTCAGAGCCCAAATGCAACCAGTTTGGATGAAACCAAAACTGTTCAGCATCTGAAACAACTCAAAATCCAATAGATTGTTAACTTCGTTGGATATATACCATAAGATGTGACAATCTCAGATCATCTAGTGTTGTTAGATTAATGTTCTGTTTAAGCGTCGTATGTACTGTCTCGACAGTTTTGCCTTTGCCATATATGACCAATAGTTAGCCCCAAGGTAAACGAGAGGGCACAATTTCCTTGTAATCGGCTTTATCCAGTGGCAGTAATGTTAATTGTGAAGTCCTACCCCTTTAGCTATTTACCCAAAAAATTAAGTCATCTATTCATAAAATCTTAGTTCCCTTGGCATTGCAGGCTCACAAAGCTGAGGCAAGTGTTAGAACTGTCGAAAACGATTCGTGGGTTGAGCTCCATATCTTACAGGCTAAAATAGTGAGATAAGTGTGAGAAAGAAGCAAAGTTATTGAAGTGGGACCAAATCTCCACTTGAAGGACACCAACTCCTCAAAGCAATGCCACGTCAACCCCTCTCTCACACAACAACCATTTGTTTTTTCTTTTCTATCTTTCTAAACAATGTGTTATTTTATGGATCTCCCACAGACATATTGGGCCCACATTTGGGCCCATCGGCCCACTCCACATATATTATTCCTTTCCTATCACAAAAGCAAGCAACGCCAGATGGAACCCTCCACCACCTCTCTCTCTCACATTATATGTTTTGTGTTGAAGAAGAAAAAAAAGGGTTTTAGGGTTATAGAGGGAGAGGAGGAGGACAAAGTGGAAGAATGTTAATCCCATCACCTAAAGTTTTGTAAAGGAAAGTTCTTTCCTCTTTCTATCTTTAACGAAGTTGC

Coding sequence (CDS)

ATGTATAAAAATCAGCTTCAGGAATTGGCGCAGAGGAGTTGCTTTAATCTTCCTTCTTATTCGTCGGTTAGGGAAGGGCCTGATCATGCTCCGAGGTTCAAAGCCTCCGTTAACTTTAACGGCGAGATCTTCGAAAGCCCTAACCATTGCCCTACTCTCCGGCTGGCTGAACACTCCGCGGCCGAGGTTGCTCTCAATTCCCTCGCGAATCGCGGTCCATCTCACTCGCTTGCCGCTCGGATCCTGGACGAGACAGGGGTTTACAAGAACCTCTTGCAGGAAATTGCCCAGAGAGTTGGGGCTCCATTGCCACAGTATACAACAGTCCGGTCAGGACTTGGACATCTGCCTGTTTTTACAGGGTCTATAGAATTGGCTGGAATCACGTTCACTGGGGAACCTGCGAAGAACAAGAAACAGGCAGAAAAGAATGCAGCCTTGGCAGCTTGGTCGTCTTTAAAACAATTGGCAAAAGAAGCGGCCAGTTCATCGGAAGTTGAAAGCAATGACGAGCCAGAGCAGGTTATGATAGCTCGGGCGTTATTGAACTATCGTTTGAAGGAGAAGATGTTCAAGACTAACCCAAATGTCCCAATGCCATTCCCAAAGAAGCTTTCATTTCAAAGTCCAAGGGCAACTAGTCCGCAACCACCCCCCGCTACCACATCCAAAATTCTTCCTTTCATTTGCAAAAGGCCAATTTCTCGAAGCAGACTACCACCAACAGAATACAACAGCCCTACATTACCATCACATCCTCTTACAGCCTATGGGAGTCATCCTCAAAAGTTCCCTGCACCTGGAGCCGTTCCTTATGTCCCGATTCGACAATATAGGATGCCTTGCCGGGGAATTGTACCACCTGTGACTATAAGAACTGCTGTGCCTGTTTATGCTGCACCGCCATTCGCACAACCACCCAATGTACACTCCCAGGTGCGAACTTCCCAACACATTCGAATTGTCCCCCCTGTCTCAGTTAGACAAGCTATTCCAGTTTTTGCTGCTCCTCCACCATTGTCCAGAAAGGAGTTCTCAGCTCTTCACAAAGGAGATTCCCTCACTGTCCATAAACAAGATCCGTCAACCACTACCGTAGAGGGTTCTGCCAATACCTCGAAAGCAGATCATTCAGCTGCATCTGGCCCAGTCTTGCTCACGACAACTTCTAATCAAGTACCGGAAACTCAGAGCCCAAATGCAACCAGTTTGGATGAAACCAAAACTGTTCAGCATCTGAAACAACTCAAAATCCAATAG

Protein sequence

MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSAAEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFTGSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARALLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLPPTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAAPPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQDPSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ

Homology

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BLAST of Cp4.1LG05g08230 vs. ExPASy Swiss-Prot
Match: Q9SKN2 (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE=1 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 6.4e-118
Identity = 237/357 (66.39%), Postives = 278/357 (77.87%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGEIFESP +C TLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALN+L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASS-SEVESNDEPEQVMIAR 180
           G++ELAGITFTG+PAKNKKQAEKNAA+AAWSSLKQLAKE +SS  E E+ DE EQV+IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRLKEKM-FKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFIC-KRP--IS 240
           AL+NYR+KE +   ++ + P+PF KK   Q+ R TSPQP PATTS+ILPFIC K+P   S
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 RSRLPPTE-YNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTA 300
           RS L  T   +     +    +Y    Q+F  P   PYVP+RQ+R  C G+ PPVTIRTA
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 VPVYAAPPFAQPP-----------NVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPL 341
           VPV++APP   PP            V S +RT+  +RI PPV++R A+PVFA+ PP+
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPV 354

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy Swiss-Prot
Match: Q9AV50 (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB6 PE=2 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 8.9e-104
Identity = 215/343 (62.68%), Postives = 251/343 (73.18%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLP+Y+ +REGPDHAPRFKA+VNFNGE FESP    TLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVAL +LA RGPS+SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAK-EAASSSEVESNDEPEQVMIAR 180
            ++ELAGITFTG+PAKNKKQAEKNAA AAWSSL+QL + EA+SS+E ESNDE EQ+ IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 181 ALLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATS-PQPPPATTSKILPFICKRPISRSR 240
           ALLNYRLKEKM   N     PFPKK   Q  R T+ PQ   ++ SKILP    +  SRSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240

Query: 241 --LPPTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVP 300
              P     +   P  P T   +   +FPA  A PYVP+  +RMPC  + PPVT+RT++P
Sbjct: 241 PESPAASDAASQTPFRP-TESPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIP 300

Query: 301 VYAAPPFAQPPNVHSQ-----VRTSQHIRIVPPVSVRQAIPVF 335
           V++APP   PP   +Q     +     IR+  PV +R A P+F
Sbjct: 301 VFSAPPL-PPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLF 341

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy Swiss-Prot
Match: Q0DKP4 (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB2 PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 6.7e-67
Identity = 140/228 (61.40%), Postives = 167/228 (73.25%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGE FESP  C TLRLAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALN L+ RGPS SLAA++LDETG+YKNLLQE A R G  LP YTT+RSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAK--EAASSS--EVESNDEPEQVM 180
            ++ELAG+TFTG P K KKQA+KNAA+AAWS LKQL +  E +SSS      +D+ EQ++
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180

Query: 181 IARALLNYRLKEKMFKTN-PNVPMPFPKKLSFQSPRATSPQPPPATTS 224
           +AR L +      + +TN    P    K+ S   P +  P  P +  S
Sbjct: 181 VARTLAS------LNQTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNAS 222

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy Swiss-Prot
Match: Q8GY79 (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 9.6e-66
Identity = 157/339 (46.31%), Postives = 208/339 (61.36%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKASVNFNGEIFESP +C TLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEV+LN L++R PS SL A+ILDETG+YKNLLQE A R G  LP YT+VRSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLA--------KEAASSSEVESNDEP 180
            ++ELAG+TFTGE AK KKQAEKNAA+AAWSSLK+++        KE  + + V S  +P
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDSQDEEKEQEAVARVLSRFKP 180

Query: 181 EQVMIARALLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATS------------------ 240
           ++V        +R +     +N ++ +   + ++  + +A+S                  
Sbjct: 181 KEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHKNSSFISL 240

Query: 241 -PQPPPATTSKILPFICKRPISRSRLPPTEYNSPTLPSHPLTAYGSH--PQKFPAPGAVP 300
            P PPP  +SKILPFI +     S+   TE  +  + S       S    ++ P      
Sbjct: 241 IPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLSKQMPFSDMNR 300

Query: 301 YVPIRQYRMPCRGIVPPVTIRTAVPVYAAPPFAQPPNVH 311
           Y  +    +    + P V +R+ +PV+AAPP    PN++
Sbjct: 301 YNFVGGCSVNPYSLAPAVQMRSVIPVFAAPPPKPNPNLN 339

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy Swiss-Prot
Match: Q9LJF5 (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.7e-62
Identity = 153/347 (44.09%), Postives = 210/347 (60.52%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCF+LPSY+  REGPDHAPRFKASVNFNGEIFESP +C TLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVAL++L+++GPS SL AR+LDETG+YKNLLQE A R G  LP YT+VRSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
            ++ELAG++F GE AK KKQAEKNAA+AAW SL+++ +      +    +E EQ ++AR 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR-----LDPLRGEEKEQEIVARV 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           L  +R KE        V    P +   ++   T  Q    TT+     +C++ +    L 
Sbjct: 181 LSRFRPKE--------VKRREPNQSRRRTVIRTIRQNTTTTTTTTGDLLCEK-LRSINLY 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGI---VPPVTIRTAVPV 300
             E +S + P        ++  +  +         ++Y    + +    P + I+T+ P 
Sbjct: 241 TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDPKPEMRIKTSSPS 300

Query: 301 YAAPPFAQPPNVHSQVR-----TSQHIRIVPPVSVRQAIPVFAAPPP 340
             +    +  N +S++         H ++ P V +R  IPV +APPP
Sbjct: 301 PLSSSVER--NCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPP 331

[Close]

BLAST of Cp4.1LG05g08230 vs. NCBI nr
Match: XP_023534429.1 (double-stranded RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 812 bits (2097), Expect = 3.39e-296
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP
Sbjct: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA
Sbjct: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD
Sbjct: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419
           PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ
Sbjct: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419

[Close]

BLAST of Cp4.1LG05g08230 vs. NCBI nr
Match: KAG7035466.1 (Double-stranded RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 804 bits (2077), Expect = 3.78e-293
Identity = 414/419 (98.81%), Postives = 416/419 (99.28%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVES+DEPEQVMIARA
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESSDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICK+PISRSRLP
Sbjct: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKKPISRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA
Sbjct: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPF QPPN HSQVRTSQHIRI PPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD
Sbjct: 301 PPFTQPPNAHSQVRTSQHIRIAPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419
           PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ
Sbjct: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419

[Close]

BLAST of Cp4.1LG05g08230 vs. NCBI nr
Match: KAG6605550.1 (Double-stranded RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 803 bits (2073), Expect = 1.54e-292
Identity = 413/419 (98.57%), Postives = 415/419 (99.05%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVES+DEPEQVMIAR 
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESSDEPEQVMIARV 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICK+PISRSRLP
Sbjct: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKKPISRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA
Sbjct: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPF QPPN HSQVRTSQHIRI PPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD
Sbjct: 301 PPFTQPPNAHSQVRTSQHIRIAPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419
           PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ
Sbjct: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419

[Close]

BLAST of Cp4.1LG05g08230 vs. NCBI nr
Match: XP_022958714.1 (double-stranded RNA-binding protein 2-like [Cucurbita moschata])

HSP 1 Score: 801 bits (2068), Expect = 8.90e-292
Identity = 413/419 (98.57%), Postives = 415/419 (99.05%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVES+DEPEQVMIARA
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESSDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICK+PISRSRLP
Sbjct: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKKPISRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA
Sbjct: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPF QPPNVH QVRTSQHIRI PPVSVRQAIPVFAA PPLSRKEFSALHKGDSLTVHKQD
Sbjct: 301 PPFTQPPNVHPQVRTSQHIRIAPPVSVRQAIPVFAAAPPLSRKEFSALHKGDSLTVHKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419
           PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ
Sbjct: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419

[Close]

BLAST of Cp4.1LG05g08230 vs. NCBI nr
Match: XP_022996057.1 (double-stranded RNA-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 773 bits (1996), Expect = 8.35e-281
Identity = 403/419 (96.18%), Postives = 405/419 (96.66%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVES+DEPEQVMIARA
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESSDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICK+PISRSRLP
Sbjct: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKKPISRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTEYNSPTLPSHP TAYG HPQKFPAPGAVPYVPIRQYRMP RGIVPPVTIRTAVPVYAA
Sbjct: 241 PTEYNSPTLPSHPRTAYGCHPQKFPAPGAVPYVPIRQYRMPSRGIVPPVTIRTAVPVYAA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPF QPP VHSQVRTSQHIRI PPVSVRQAIPVFAAPPPLSRKE SALHKGDSLTV KQD
Sbjct: 301 PPFTQPPIVHSQVRTSQHIRIAPPVSVRQAIPVFAAPPPLSRKELSALHKGDSLTVDKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419
           PSTT VEGSANTSKADHSAAS PVLLT TS QVPE QS NATSLDETKTVQHLKQLKIQ
Sbjct: 361 PSTTAVEGSANTSKADHSAASDPVLLTRTSIQVPEAQSTNATSLDETKTVQHLKQLKIQ 419

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy TrEMBL
Match: A0A6J1H5X1 (double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111459856 PE=4 SV=1)

HSP 1 Score: 801 bits (2068), Expect = 4.31e-292
Identity = 413/419 (98.57%), Postives = 415/419 (99.05%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVES+DEPEQVMIARA
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESSDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICK+PISRSRLP
Sbjct: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKKPISRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA
Sbjct: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPF QPPNVH QVRTSQHIRI PPVSVRQAIPVFAA PPLSRKEFSALHKGDSLTVHKQD
Sbjct: 301 PPFTQPPNVHPQVRTSQHIRIAPPVSVRQAIPVFAAAPPLSRKEFSALHKGDSLTVHKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419
           PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ
Sbjct: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy TrEMBL
Match: A0A6J1K0V3 (double-stranded RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111491377 PE=4 SV=1)

HSP 1 Score: 773 bits (1996), Expect = 4.04e-281
Identity = 403/419 (96.18%), Postives = 405/419 (96.66%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVES+DEPEQVMIARA
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESSDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICK+PISRSRLP
Sbjct: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKKPISRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTEYNSPTLPSHP TAYG HPQKFPAPGAVPYVPIRQYRMP RGIVPPVTIRTAVPVYAA
Sbjct: 241 PTEYNSPTLPSHPRTAYGCHPQKFPAPGAVPYVPIRQYRMPSRGIVPPVTIRTAVPVYAA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPF QPP VHSQVRTSQHIRI PPVSVRQAIPVFAAPPPLSRKE SALHKGDSLTV KQD
Sbjct: 301 PPFTQPPIVHSQVRTSQHIRIAPPVSVRQAIPVFAAPPPLSRKELSALHKGDSLTVDKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLKIQ 419
           PSTT VEGSANTSKADHSAAS PVLLT TS QVPE QS NATSLDETKTVQHLKQLKIQ
Sbjct: 361 PSTTAVEGSANTSKADHSAASDPVLLTRTSIQVPEAQSTNATSLDETKTVQHLKQLKIQ 419

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy TrEMBL
Match: A0A6J1CIU4 (double-stranded RNA-binding protein 2 OS=Momordica charantia OX=3673 GN=LOC111011373 PE=4 SV=1)

HSP 1 Score: 684 bits (1764), Expect = 9.89e-246
Identity = 360/422 (85.31%), Postives = 379/422 (89.81%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHC TLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCATLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSE ES+D+PEQV+IARA
Sbjct: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEAESSDDPEQVVIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           LLNYRL EKMF+TNPN PMPFPKKLSFQSPRA SPQPPPATTSKILPFICK+P+ RSRLP
Sbjct: 181 LLNYRLMEKMFRTNPNAPMPFPKKLSFQSPRAASPQPPPATTSKILPFICKKPVPRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PTE NSP LPS P TA GSHPQKFPAPGAVPYVPIR YRMPCRGIVPPVTIRTAVPVY+A
Sbjct: 241 PTENNSPALPSQPPTACGSHPQKFPAPGAVPYVPIRHYRMPCRGIVPPVTIRTAVPVYSA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
           PPF QPP V SQ+R +  IR+ PPV +RQAIPVFA PPP +RKE  ALHKGDSLTV K+D
Sbjct: 301 PPFPQPPKVPSQMRAAPPIRMAPPVLIRQAIPVFATPPPFTRKELPALHKGDSLTVLKED 360

Query: 361 PSTTTVEGSANTSKA-DHSA--ASGPVLLTTTSNQVPETQSPNATSLDETKTVQHLKQLK 419
           P T   E SA+T KA DHSA  AS PV L  +SNQ  ETQ+ NA +LDET+TVQ+LKQLK
Sbjct: 361 PPTIATEDSADTLKASDHSATSASAPVSLAASSNQAQETQNTNAINLDETETVQNLKQLK 420

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy TrEMBL
Match: A0A6J1FYW0 (double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111449096 PE=4 SV=1)

HSP 1 Score: 660 bits (1702), Expect = 2.53e-236
Identity = 353/420 (84.05%), Postives = 372/420 (88.57%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGE+FESPNHCPTLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGITF GEPAKNKKQAEKNAALAAWSSLKQLAKEAASSS VES+DEPEQVMIARA
Sbjct: 121 GSIELAGITFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           L NY LKEK F+TN N PMPFPKKLS Q+PRATS QPPPATTSKILPFIC++P+ RSRLP
Sbjct: 181 LSNYCLKEKTFRTNSNAPMPFPKKLSLQTPRATSQQPPPATTSKILPFICQKPVPRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PT+ NS TLPSHPLTA GSHPQKFPAPGAVPYVPI+QY MPCRGIV PVTIRTAVPVY+A
Sbjct: 241 PTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYSMPCRGIVLPVTIRTAVPVYSA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
            P  QP  V SQ+R SQ IRI PPVS+RQAIPVFAAPPPLSRKE SAL KGDS TV KQD
Sbjct: 301 SPCPQPLKVPSQMRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGDSPTVPKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDE-TKTVQHLKQLKIQ 419
           P T   E SA++  ADHS AS PV LT   NQVPETQ+  A +LDE TKTV++LKQ  IQ
Sbjct: 361 PPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKTVKNLKQPIIQ 420

[Close]

BLAST of Cp4.1LG05g08230 vs. ExPASy TrEMBL
Match: A0A6J1J8R1 (double-stranded RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483627 PE=4 SV=1)

HSP 1 Score: 657 bits (1694), Expect = 4.18e-235
Identity = 351/420 (83.57%), Postives = 371/420 (88.33%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGE+FESPNHCPTLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEVFESPNHCPTLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AE+ALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT
Sbjct: 61  AEIALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
           GSIELAGI F GEPAKNKKQAEKNAALAAWSSLKQLAKEAASSS VES+DEPEQVMIARA
Sbjct: 121 GSIELAGIPFIGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSAVESSDEPEQVMIARA 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           L NY LKEK F+TN N PMPFPKKLSFQ+PRATS  PPPATTSKILPFIC++P+ RSRLP
Sbjct: 181 LSNYCLKEKTFRTNSNGPMPFPKKLSFQTPRATSQHPPPATTSKILPFICQKPVPRSRLP 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTAVPVYAA 300
           PT+ NS TLPSHPLTA GSHPQKFPAPGAVPYVPI+QYRMPCRGIV PVTIRTAVPVY+A
Sbjct: 241 PTKNNSTTLPSHPLTACGSHPQKFPAPGAVPYVPIQQYRMPCRGIVLPVTIRTAVPVYSA 300

Query: 301 PPFAQPPNVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPLSRKEFSALHKGDSLTVHKQD 360
            P  QP    SQ+R SQ IRI PPVS+RQAIPVFAAPPPLSRKE SAL KG+S TV KQD
Sbjct: 301 SPCPQPLKAPSQIRPSQPIRIAPPVSIRQAIPVFAAPPPLSRKELSALPKGESPTVPKQD 360

Query: 361 PSTTTVEGSANTSKADHSAASGPVLLTTTSNQVPETQSPNATSLDE-TKTVQHLKQLKIQ 419
           P T   E SA++  ADHS AS PV LT   NQVPETQ+  A +LDE TKTV++LKQ  IQ
Sbjct: 361 PPTIATEDSADSLIADHSVASTPVSLTVPPNQVPETQNTKAINLDEETKTVKNLKQPIIQ 420

[Close]

BLAST of Cp4.1LG05g08230 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 425.6 bits (1093), Expect = 4.5e-119
Identity = 237/357 (66.39%), Postives = 278/357 (77.87%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKA+VNFNGEIFESP +C TLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVALN+L+NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASS-SEVESNDEPEQVMIAR 180
           G++ELAGITFTG+PAKNKKQAEKNAA+AAWSSLKQLAKE +SS  E E+ DE EQV+IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRLKEKM-FKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFIC-KRP--IS 240
           AL+NYR+KE +   ++ + P+PF KK   Q+ R TSPQP PATTS+ILPFIC K+P   S
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 RSRLPPTE-YNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGIVPPVTIRTA 300
           RS L  T   +     +    +Y    Q+F  P   PYVP+RQ+R  C G+ PPVTIRTA
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP---PYVPMRQFRSQCHGMAPPVTIRTA 300

Query: 301 VPVYAAPPFAQPP-----------NVHSQVRTSQHIRIVPPVSVRQAIPVFAAPPPL 341
           VPV++APP   PP            V S +RT+  +RI PPV++R A+PVFA+ PP+
Sbjct: 301 VPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPV 354

[Close]

BLAST of Cp4.1LG05g08230 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 252.3 bits (643), Expect = 6.9e-67
Identity = 157/339 (46.31%), Postives = 208/339 (61.36%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCFNLPSY+ +REGPDHAPRFKASVNFNGEIFESP +C TLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEV+LN L++R PS SL A+ILDETG+YKNLLQE A R G  LP YT+VRSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLA--------KEAASSSEVESNDEP 180
            ++ELAG+TFTGE AK KKQAEKNAA+AAWSSLK+++        KE  + + V S  +P
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDSQDEEKEQEAVARVLSRFKP 180

Query: 181 EQVMIARALLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATS------------------ 240
           ++V        +R +     +N ++ +   + ++  + +A+S                  
Sbjct: 181 KEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHKNSSFISL 240

Query: 241 -PQPPPATTSKILPFICKRPISRSRLPPTEYNSPTLPSHPLTAYGSH--PQKFPAPGAVP 300
            P PPP  +SKILPFI +     S+   TE  +  + S       S    ++ P      
Sbjct: 241 IPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLSKQMPFSDMNR 300

Query: 301 YVPIRQYRMPCRGIVPPVTIRTAVPVYAAPPFAQPPNVH 311
           Y  +    +    + P V +R+ +PV+AAPP    PN++
Sbjct: 301 YNFVGGCSVNPYSLAPAVQMRSVIPVFAAPPPKPNPNLN 339

[Close]

BLAST of Cp4.1LG05g08230 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-63
Identity = 153/347 (44.09%), Postives = 210/347 (60.52%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCF+LPSY+  REGPDHAPRFKASVNFNGEIFESP +C TLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVAL++L+++GPS SL AR+LDETG+YKNLLQE A R G  LP YT+VRSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
            ++ELAG++F GE AK KKQAEKNAA+AAW SL+++ +      +    +E EQ ++AR 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR-----LDPLRGEEKEQEIVARV 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           L  +R KE        V    P +   ++   T  Q    TT+     +C++ +    L 
Sbjct: 181 LSRFRPKE--------VKRREPNQSRRRTVIRTIRQNTTTTTTTTGDLLCEK-LRSINLY 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGI---VPPVTIRTAVPV 300
             E +S + P        ++  +  +         ++Y    + +    P + I+T+ P 
Sbjct: 241 TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDPKPEMRIKTSSPS 300

Query: 301 YAAPPFAQPPNVHSQVR-----TSQHIRIVPPVSVRQAIPVFAAPPP 340
             +    +  N +S++         H ++ P V +R  IPV +APPP
Sbjct: 301 PLSSSVER--NCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPP 331

[Close]

BLAST of Cp4.1LG05g08230 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-63
Identity = 153/347 (44.09%), Postives = 210/347 (60.52%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           MYKNQLQELAQRSCF+LPSY+  REGPDHAPRFKASVNFNGEIFESP +C TLR AEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           AEVAL++L+++GPS SL AR+LDETG+YKNLLQE A R G  LP YT+VRSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLKQLAKEAASSSEVESNDEPEQVMIARA 180
            ++ELAG++F GE AK KKQAEKNAA+AAW SL+++ +      +    +E EQ ++AR 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR-----LDPLRGEEKEQEIVARV 180

Query: 181 LLNYRLKEKMFKTNPNVPMPFPKKLSFQSPRATSPQPPPATTSKILPFICKRPISRSRLP 240
           L  +R KE        V    P +   ++   T  Q    TT+     +C++ +    L 
Sbjct: 181 LSRFRPKE--------VKRREPNQSRRRTVIRTIRQNTTTTTTTTGDLLCEK-LRSINLY 240

Query: 241 PTEYNSPTLPSHPLTAYGSHPQKFPAPGAVPYVPIRQYRMPCRGI---VPPVTIRTAVPV 300
             E +S + P        ++  +  +         ++Y    + +    P + I+T+ P 
Sbjct: 241 TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDPKPEMRIKTSSPS 300

Query: 301 YAAPPFAQPPNVHSQVR-----TSQHIRIVPPVSVRQAIPVFAAPPP 340
             +    +  N +S++         H ++ P V +R  IPV +APPP
Sbjct: 301 PLSSSVER--NCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPP 331

[Close]

BLAST of Cp4.1LG05g08230 vs. TAIR 10
Match: AT3G62800.1 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-30
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYSSVREGPDHAPRFKASVNFNGEIFESPNHCPTLRLAEHSA 60
           +YK QLQ  A +    LP Y++ REGP HAPRF+ +V F G+ F+S    PTL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNSLANRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTVRSGLGHLPVFT 120
           A++A+ SL  + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 123

Query: 121 GSIELAGITFTGEPAKNKKQAEKNAALAAWSSLK 155
            ++E AG  F+GE AK KK AE +AA  A+ S+K
Sbjct: 124 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g08230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKN2	6.4e-118	66.39	Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE...	[more]
Q9AV50	8.9e-104	62.68	Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0DKP4	6.7e-67	61.40	Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q8GY79	9.6e-66	46.31	Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE...	[more]
Q9LJF5	1.7e-62	44.09	Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE...	[more]

BLAST of Cp4.1LG05g08230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534429.1	3.39e-296	100.00	double-stranded RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]
KAG7035466.1	3.78e-293	98.81	Double-stranded RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6605550.1	1.54e-292	98.57	Double-stranded RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022958714.1	8.90e-292	98.57	double-stranded RNA-binding protein 2-like [Cucurbita moschata]	[more]
XP_022996057.1	8.35e-281	96.18	double-stranded RNA-binding protein 2-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g08230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5X1	4.31e-292	98.57	double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1K0V3	4.04e-281	96.18	double-stranded RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1CIU4	9.89e-246	85.31	double-stranded RNA-binding protein 2 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1FYW0	2.53e-236	84.05	double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1J8R1	4.18e-235	83.57	double-stranded RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Cp4.1LG05g08230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28380.1	4.5e-119	66.39	dsRNA-binding protein 2	[more]
AT5G41070.1	6.9e-67	46.31	dsRNA-binding protein 5	[more]
AT3G26932.1	1.2e-63	44.09	dsRNA-binding protein 3	[more]
AT3G26932.2	1.2e-63	44.09	dsRNA-binding protein 3	[more]
AT3G62800.1	1.0e-30	47.40	double-stranded-RNA-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 2..69 e-value: 2.7E-17 score: 73.4 coord: 88..154 e-value: 5.8E-19 score: 79.0
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 88..153 e-value: 9.5E-12 score: 45.5 coord: 2..68 e-value: 9.0E-14 score: 52.0
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 1..70 score: 12.280972
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 87..155 score: 11.479855
None	No IPR available	GENE3D	3.30.160.20		coord: 84..155 e-value: 9.3E-21 score: 75.9
None	No IPR available	GENE3D	3.30.160.20		coord: 2..83 e-value: 1.6E-21 score: 78.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 352..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..419
None	No IPR available	PANTHER	PTHR46031:SF7	DOUBLE-STRANDED RNA-BINDING PROTEIN 2-LIKE	coord: 1..351
None	No IPR available	PANTHER	PTHR46031	FAMILY NOT NAMED	coord: 1..351
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 2..68
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 88..158
IPR044451	AtDRB-like, second double-stranded RNA binding domain, plant	CDD	cd19908	DSRM_AtDRB-like_rpt2	coord: 86..154 e-value: 1.04591E-37 score: 129.521
IPR044450	AtDRB-like, first double-stranded RNA binding domain, plant	CDD	cd19907	DSRM_AtDRB-like_rpt1	coord: 1..69 e-value: 7.41327E-40 score: 134.911

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g08230.1	Cp4.1LG05g08230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003725	double-stranded RNA binding