Cp4.1LG05g08110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g08110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 5023348 .. 5026223 (-)
RNA-Seq ExpressionCp4.1LG05g08110
SyntenyCp4.1LG05g08110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGTAGAATCGAAATTTGTGTCTGAGTTGTTTGCTGTGGAGTCTTCTGAACTGGGAGGATACGAATTTCAAATCCTCTGCTATGAGAGCGAATGCTTCTACTTCTGAGATGGCTTTGACCGTGCGAGTGGAAGAAGGAAGTACAACGCTGGGACGAGGATCGAGTGCCCATGTTAGTAGCTCCTCACCACAGAAATCACCTGGACCGATACAACAGGAGTTGAAGAATCCTGTTCTGCCGCCATTAGTGGTGTATGAATCGAGATGTCCTCTGATTATGAATAGCATTTCATTGACTGGATCTCCCTCTCGCACCAGAAATGTGCCTTCTGTGCTCAAGGCAGGCTTAAGTCTCTCGCATATTGCATCTAGCATTCTTTCATCCATTTGATCGAACAATGGAACCTGCCAAAATCAAGGAAGAGTGTGCAGCACAGAGAAGAATCAGTTTAATTAGCCACATTTTGATCATTTCCACAAATGCTCTTCCAGTTTATGTGTGAAACTTACCCTTCGAACAAGATCGAGGCAGAGGTGACGTTTTATGTCTCTTCGGAGATCCAATGGAAGGCTTCTAAGCAGCGATTCTTCATCAACTCCTCGAGTTGCTACCCACTTATACTGATCATATCTGCGGACAGATTGTCTGAGCTCTGGAGGTAGCTGCCTGTGATGCATCCATTGCTCTGTATCAGTTCTCCTTATTCTCCACTCTTCTAACCGGACAGTCGTCGATTGGAGGTATTTCTTAAAACAAATAAGCATTTATGATTCATTTAACTTCAAGCAAGACTGACAATGATTTTATAGAAACTATGAAGAACAAGCATGATATATAACAGAACTGGGTAGGACAAAATGATCGATTACAATAGCAATTATACGAATGGCTTACCTGCATATTGCCAATGAGCAATGCAAACAGAACCAGTCCAAGAGTTGCCACAATTATGGCAAAAACTATTTCCCCAACAAAAGTGCTTGTGGCAAGATTTTGTCCCAAGGAACTGCAAGTATAAATCGAAGATAGTTGAAATTTTCATATCAAACTGTATCAGCCAAGCCCAAGCCCACACCTAAGCCCAGCTAGCAGATATTGTCCTATTTGAGTTTTCACTTTTAGGCTTCCCCTTAAAGTTTTTAGATCGCATCTCTTAGGAAGAGGTCTCCACACCCTTGTAAGTAATCGTTCCCCTCTTCAGCCAACGTGGGATCTCACAATCCACTCCCTTGGGGCTCAGCGTCCTCGTTGACACACCACCTAGTGTCTGGCTCTGATACCATTTGTAATAGCCCAAGTCCTACCGCTAGCAGATATTGTCCACTTTGGCCCGTTACGTATCGCCGTTAATCTCACGGTTTTTCAAACGCGTCTATTAGGGAGAAGTTTCCACACCATTATAAGGAATGTTTCGTTCCCCTCTCCAACCGACGTGGGACCTCACACTGATCTTCAACCATTTTATGGTTTGATGGTTTAAAGAATATACAGAGTCTCCCAGCCCCTTATCATATTGGAGGCCAATGTATTTGAAGCATATGATAATTCCATATTGTTTAATTGCTCCTTCGTTTCAAAGGAGTATGAAAAGAGAACTTCCAAATGCAGGATTAGCTCACCTGAGATTTTTCAGACCCCACCAAAGACAGTAGAAGTACTTGTTGAAAAACGGTGAGGTTGTGACATGGAAAGTTATTGAATCACCATATATACCAAATTGATAAAAGGGATCATTTGGATTGCATGTGTTTTTGATGTTGCTCGTACGAAACCACGAGCCCCTTTGAGGGTCATCGATCTTATGACAGTCGAAGAATCCATTGTTACAAGATTTGTCAAACTTACAAAGTGTTCTCCAGCATGCTTCTTGTCGCTCAATTGAAAGAAGGTACCAGCAAGCTCCTAGAACCTTTTAAAAGGATAAAACAATAGGATCATCAGCTTGAGTCACATAAGTTATTCATTTCTACTTATTCTTCTACTCACATGGCTTGCCAACATATACAGGATCAGGTTATAAGCAGCTCCAGCCCATGCTGTTTGTGTCACAAGTCCAGTGGCCTTAACAATTTGTGTTGAGAGAGGAAATATGAGAAAAAGCCTTGGGATGTACTGGAATATGAGAAAGAACCGCAGAAAGTTCTTGGTGTTTGTCATTATTGAGCCACTGAGGTTGGGGATGACAATCCATATCAGTACCTACAAAAGCAGTGCTTAGATCAACAATTTGTCAACCTCATACCCAACATCAATGATAAAGCAATTGAAAGATCCACATACCTGAGGAACTGGCACTGCTGCAATGAAATCAATCCAGAAACCATGCCGTAGATACCTTACTGCTATCTTACAAGTGTCTATAACAAGCTCTCCTCTCCCAAATACACGAGAAGAGGGCGCGACATAAGCTGTACGGAACTTAATGAGAATATGAACTGTGTAGAAAACATCAGCTATTGTTCTTATAATTGTGAGGACGACTTCGAGACCTACTCCTATATCAATGCAGACGTTATCCCGGACGACAGGCAAGTAAAAGAAAAGTGGGTCTACAAACAAAGAGATTAAACAAGCTACTAGAAAGATTTTATTCCATCTCCTTATGGCTTGTCCTCTAGGATCCAATATTTTTCTTTGCACTCTCTCATAATCCTCAGAGAAAACTCTAGACAGAACTTTAGCTCGCAAGGATCTTCCAGACTTCCTGGAAGCCGTCGATTCTGGTATATGTGTGCCATCAAGGTTGTATATGATCTTCTTCACGCCACCACCATTGATAGTAGGCAGGGTGGATGATTCAAGATCATCTTGGAATCTGGAAAAGAATCCGATAAATGCTACAGAAAACAACAGAAATTGTGTTGAAAATTGA

mRNA sequence

ATGCGAGATACGAATTTCAAATCCTCTGCTATGAGAGCGAATGCTTCTACTTCTGAGATGGCTTTGACCGTGCGAGTGGAAGAAGGAAGTACAACGCTGGGACGAGGATCGAGTGCCCATGTTAGTAGCTCCTCACCACAGAAATCACCTGGACCGATACAACAGGAGTTGAAGAATCCTGTTCTGCCGCCATTAGTGGTAGCTGCCTGTGATGCATCCATTGCTCTGTATCAGTTCTCCTTATTCTCCACTCTTCTAACCGGACAGTCGTCGATTGGAGAGAAAACTCTAGACAGAACTTTAGCTCGCAAGGATCTTCCAGACTTCCTGGAAGCCGTCGATTCTGGTATATGTGTGCCATCAAGGTTGTATATGATCTTCTTCACGCCACCACCATTGATAGTAGGCAGGGTGGATGATTCAAGATCATCTTGGAATCTGGAAAAGAATCCGATAAATGCTACAGAAAACAACAGAAATTGTGTTGAAAATTGA

Coding sequence (CDS)

ATGCGAGATACGAATTTCAAATCCTCTGCTATGAGAGCGAATGCTTCTACTTCTGAGATGGCTTTGACCGTGCGAGTGGAAGAAGGAAGTACAACGCTGGGACGAGGATCGAGTGCCCATGTTAGTAGCTCCTCACCACAGAAATCACCTGGACCGATACAACAGGAGTTGAAGAATCCTGTTCTGCCGCCATTAGTGGTAGCTGCCTGTGATGCATCCATTGCTCTGTATCAGTTCTCCTTATTCTCCACTCTTCTAACCGGACAGTCGTCGATTGGAGAGAAAACTCTAGACAGAACTTTAGCTCGCAAGGATCTTCCAGACTTCCTGGAAGCCGTCGATTCTGGTATATGTGTGCCATCAAGGTTGTATATGATCTTCTTCACGCCACCACCATTGATAGTAGGCAGGGTGGATGATTCAAGATCATCTTGGAATCTGGAAAAGAATCCGATAAATGCTACAGAAAACAACAGAAATTGTGTTGAAAATTGA

Protein sequence

MRDTNFKSSAMRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLPPLVVAACDASIALYQFSLFSTLLTGQSSIGEKTLDRTLARKDLPDFLEAVDSGICVPSRLYMIFFTPPPLIVGRVDDSRSSWNLEKNPINATENNRNCVEN
Homology
[Close]
BLAST of Cp4.1LG05g08110 vs. NCBI nr
Match: CAA7398843.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 88.6 bits (218), Expect = 2.21e-19
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 5   NFKSSAMRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLPP 64
           +  SSA RA ASTSEMALTVRV++G   +GRGS AHV SSSPQKSPGPI+QELKNPV PP
Sbjct: 43  SISSSATRAKASTSEMALTVRVDDGRLAVGRGSRAHVRSSSPQKSPGPIRQELKNPVRPP 102

Query: 65  LVV 67
           LVV
Sbjct: 103 LVV 105

[Close]
BLAST of Cp4.1LG05g08110 vs. NCBI nr
Match: BAT95864.1 (hypothetical protein VIGAN_08268500 [Vigna angularis var. angularis])

HSP 1 Score: 81.6 bits (200), Expect = 1.34e-16
Identity = 57/110 (51.82%), Postives = 58/110 (52.73%), Query Frame = 0 

Query: 11  MRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLPPLVV--- 70
           M A ASTS MA TVRVEEG TT+GRGS AH  SSSPQKSP P   ELK PVLPPLVV   
Sbjct: 1   MSAKASTSVMAFTVRVEEGRTTVGRGSKAHGRSSSPQKSPEPSLHELKKPVLPPLVVQES 60

Query: 71  -------------------------------AACDASIALYQFSLFSTLL 86
                                          AACDASI  Y F LFS LL
Sbjct: 61  RRPLTMKSISFTRSPSRTTQAPGVKREGNEGAACDASIFPYLFFLFSILL 110

[Close]
BLAST of Cp4.1LG05g08110 vs. NCBI nr
Match: KAG5599055.1 (hypothetical protein H5410_030425 [Solanum commersonii])

HSP 1 Score: 84.3 bits (207), Expect = 4.33e-16
Identity = 47/63 (74.60%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 4   TNFKSSAMRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLP 63
           TNFKSSA   N STSE A TVRVE+G  TLGR   AHVSSSSPQKSPGPI+QELK PV P
Sbjct: 66  TNFKSSATNVNDSTSETAFTVRVEDGRITLGRRLRAHVSSSSPQKSPGPIRQELKKPVRP 125

Query: 64  PLV 66
           P V
Sbjct: 126 PFV 128

[Close]
BLAST of Cp4.1LG05g08110 vs. NCBI nr
Match: KAG9152510.1 (hypothetical protein Leryth_016436, partial [Lithospermum erythrorhizon])

HSP 1 Score: 76.6 bits (187), Expect = 7.46e-14
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 6   FKSSAMRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLPPL 65
           F SS +RANASTSE+A T RV++G  TLGRGS AHVS+SSPQKS GP+  ELK PV PP 
Sbjct: 86  FLSSELRANASTSEVAFTERVDDGRITLGRGSRAHVSNSSPQKSLGPMLIELKKPVRPPF 145

Query: 66  VV 67
           VV
Sbjct: 146 VV 147

[Close]
BLAST of Cp4.1LG05g08110 vs. NCBI nr
Match: PNY05125.1 (hypothetical protein L195_g001565 [Trifolium pratense])

HSP 1 Score: 72.0 bits (175), Expect = 1.82e-13
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 11 MRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGP--IQQELKNPVLPP 64
          M ANASTSE+ALTV VEEGS TL  GS+AH ++SSPQKSPGP  IQ ELKNP  PP
Sbjct: 1  MSANASTSEIALTVLVEEGSITLSLGSNAHANNSSPQKSPGPGPIQHELKNPARPP 56

[Close]
BLAST of Cp4.1LG05g08110 vs. ExPASy TrEMBL
Match: A0A7I8KM36 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07009513 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.07e-19
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 5   NFKSSAMRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLPP 64
           +  SSA RA ASTSEMALTVRV++G   +GRGS AHV SSSPQKSPGPI+QELKNPV PP
Sbjct: 43  SISSSATRAKASTSEMALTVRVDDGRLAVGRGSRAHVRSSSPQKSPGPIRQELKNPVRPP 102

Query: 65  LVV 67
           LVV
Sbjct: 103 LVV 105

[Close]
BLAST of Cp4.1LG05g08110 vs. ExPASy TrEMBL
Match: A0A0S3SSN9 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G268500 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.50e-17
Identity = 57/110 (51.82%), Postives = 58/110 (52.73%), Query Frame = 0 

Query: 11  MRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLPPLVV--- 70
           M A ASTS MA TVRVEEG TT+GRGS AH  SSSPQKSP P   ELK PVLPPLVV   
Sbjct: 1   MSAKASTSVMAFTVRVEEGRTTVGRGSKAHGRSSSPQKSPEPSLHELKKPVLPPLVVQES 60

Query: 71  -------------------------------AACDASIALYQFSLFSTLL 86
                                          AACDASI  Y F LFS LL
Sbjct: 61  RRPLTMKSISFTRSPSRTTQAPGVKREGNEGAACDASIFPYLFFLFSILL 110

[Close]
BLAST of Cp4.1LG05g08110 vs. ExPASy TrEMBL
Match: A0A2K3NQ13 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g001565 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.82e-14
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 11 MRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGP--IQQELKNPVLPP 64
          M ANASTSE+ALTV VEEGS TL  GS+AH ++SSPQKSPGP  IQ ELKNP  PP
Sbjct: 1  MSANASTSEIALTVLVEEGSITLSLGSNAHANNSSPQKSPGPGPIQHELKNPARPP 56

[Close]
BLAST of Cp4.1LG05g08110 vs. ExPASy TrEMBL
Match: A0A0P0VLY8 (Os02g0627750 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0627750 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.01e-13
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 4  TNFKSSAMRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLP 63
          TN +SSA  ANASTS+ A TVRV+ GS   GRGSSAH  SSSPQ SP P++ ELKNP LP
Sbjct: 13 TNRRSSATSANASTSDTARTVRVDSGSDAAGRGSSAHGRSSSPQNSPAPMRHELKNPDLP 72

Query: 64 PLVV 67
          P VV
Sbjct: 73 PCVV 76

[Close]
BLAST of Cp4.1LG05g08110 vs. ExPASy TrEMBL
Match: A0A7I8KFG1 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_05006481 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.13e-11
Identity = 42/64 (65.62%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 4  TNFKSSAMRANASTSEMALTVRVEEGSTTLGRGSSAHVSSSSPQKSPGPIQQELKNPVLP 63
          TN +SSA  A ASTS  ALTVRVEEG   LG G  A V SSSPQKSPG    ELK P+ P
Sbjct: 19 TNLRSSARSAKASTSSRALTVRVEEGRFKLGLGIRAQVRSSSPQKSPGRRVMELKKPLRP 78

Query: 64 PLVV 67
          PLVV
Sbjct: 79 PLVV 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g08110 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g08110 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA7398843.12.21e-1976.19unnamed protein product [Spirodela intermedia][more]
BAT95864.11.34e-1651.82hypothetical protein VIGAN_08268500 [Vigna angularis var. angularis][more]
KAG5599055.14.33e-1674.60hypothetical protein H5410_030425 [Solanum commersonii][more]
KAG9152510.17.46e-1469.35hypothetical protein Leryth_016436, partial [Lithospermum erythrorhizon][more]
PNY05125.11.82e-1373.21hypothetical protein L195_g001565 [Trifolium pratense][more]
BLAST of Cp4.1LG05g08110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7I8KM361.07e-1976.19Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07009513 PE=4 SV... [more]
A0A0S3SSN96.50e-1751.82Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G... [more]
A0A2K3NQ138.82e-1473.21Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g001565 PE=4 SV=1[more]
A0A0P0VLY81.01e-1367.19Os02g0627750 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0627750 PE... [more]
A0A7I8KFG12.13e-1165.63Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_05006481 PE=4 SV... [more]
BLAST of Cp4.1LG05g08110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g08110.1Cp4.1LG05g08110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane