Cp4.1LG05g07510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g07510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Mitochondrial import inner membrane translocase subunit
Location	Cp4.1LG05: 4710513 .. 4714175 (+)
RNA-Seq Expression	Cp4.1LG05g07510
Synteny	Cp4.1LG05g07510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATAGTAATAAATAAATAAATAAAATAATAAACTATTCTAACGGCGGGATAAAATTGAACCACACCCTACGCGCCCTAATTGTGTCGCCGTCGCCTCCCTCGAAAACAAAATCAGCTCTGGGGCGCAACCAAACTACAAATAGGCAGTGGTTTATAGGGTTTTGCAACCACCGAACACCGAACAAATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCGGAGGAGTTTCTTGAGGTTCAATTCTCCCCTACTTGTTTCTTTTCTACTAAACTTGTTGGTCGAGTTACTGATATGTATGTGCGGATGTACGTATATCTGGATTTCTTAGAGTATTCGGTTTGATGAATGCGTTTCACTTTTATGTGTTATGTGATAGTAGAAATGAATTCGGAATTTCTGGGTCTAAAGCTTGGGTAGCGCTAGGAGCTGGCTTTTGAAGATGGGATGTAAGAATTAATCAATGCGAATTGTTGAGACTACAGATTTTGGAGTATTCTTTCGCAACATTAAATGGAATCCTTTACATGCGCATTTCTCAGTTATAGTTCGAACTTGTTTTTTTATATCCTCATTTTTTAAATTTGCTAATTGAAGATGTAGAAATGTTCAATCCATTTAGAATTTCTTCAGTGATTTGCGTGCAATGGAAATAAAGTACTTGATCTTGCTCTCTGTTTCTAGAGTTTTTTTCGGTTTGGTGATTATAAGTTAGCAACTATCTTGTAGTTTTGTTGTCTAACTTGTTTTGTAGGATTTATTGACAGAATAGTTTTTCTGCTCGTTGTTTTTGACGCGGAAGGGGAGTGGCTAGTACTAGTAGGACGAGCAAACTTTCTGAAATAAATTTCTTGAACCTTATAATTAGTGCCTTAGCATGATACTATTATTGGTCTGTGGTAAAGGACACGTTCTTTAATTTACTCTCACTGTAAGTTTTTATAAAGATCAGTACAGACTATGGTTTTACTTGGATCAAAAAGTTCTCTAATAAGATAGGGACTTTTGTGAAGAGGTCTTGAGAAATTGGAGAGTGAAGAATCTTATTGTTCCTGTTTAGGTTAACAGGAAGGGCTAGAAGGGATTTTCTTTGTGATTCAGAATTTCTTCAAGATCAACACGTTGGAAAGTGTTTGTGCATGTGGAACGAAAGATTAGAAATCATTTCTAGATATTTTGACAAACGATTTAGGCCCCTACCAGAACCCTGAAAAGGGTTGATCATAGTGGTTGAACCTTGCTTGCCCCTAGAATGATAAATCAACTGATGATATCCTCTATATTCTTCACATTATTACCAACCCTTAAGTTTGATGCGAGGAAAGTTGTGATTGTGGCCATCTATATGTGTCATCTGGAGGTGCAACATTTAGCTATTAGATAAGGAATATGTATTCATGTCATCTGGAGTTGCAACAGCTTGCTATTAGACAAGGCACATCAAGAGGCACAGAAGGGGCCAGTCATCCCTGCAGACTTCAGTACCCCATATGCCTCTTGGAGGAACCGATTAAAAAGAACATTTCCAATTGCCGTATGTAAAGGAAAGCATCTTACGGTGGTTGGTCAATTGATGTTGTCTAGTGCCCCTATGTATTCTTTCTCTTTTTAGATCCGATGTACTTCACTTAAGGAGATTTAAAAGAAAATGAGGCTCTTTGGGCTAGCAGTTATCTCGGAAATGGAAAAATTGCATTTTTGGAATAATGGCAACCTGCACAAATTTTTTTGCTGTGTTCAATTGAAACTACGAAGGGAAGATAAGGAAAAGAAAAGGATGGCTGTAGAATAATAACGGGGTTAATGCTATGATTCCGTGACTTTATAGTCTAGGCCACTATGATTGAGATACACCATCTTCTTCTTATCATGCTCCTCACTCATAGGATGAAAATACTGTTGATATTGACCGAAATATCGGTAAAGTTGAATTTTTGAAAACGATATAAAGGGGAGAGTCATTTTTCCAAAACATCAATGATATTGTCGATCATTGTTGATATTTTATTGATATTTTACGGATATTTTTCTGATATTTTATCTGATATCCGTGATATTTTGCTTATATTCATGACACTTTGTTGCTTTTTTTCTCTCTCGATCACAACATATACCTTGATTTATCACACTTTAAAACGGTATAGTGTGAGTTTTAGGGCTAGGCCAAGAATTTAGGGTCACAAATCCATACCCAAATCATATTAAAAATCTTTGTCTCAAATGTCTCCTTCATTGTTTTTCTTATACAATTATCAATAACATATTAATGATTGTCTACTCCCAAAAGGATATCTTGTTATTGTTAAATGATGTATTTGTGTGTTGACATGACTATAAATTAATTAATTAATCAAAATTTTATATATATTTTTAGATACATTATTTTACTATCTATTTTCATATTAATGTATATGTTAATGTTATAAATGTTTAAAATGATTGTTTATGACTTAAATAAGTTTTCTGGGATTATTAAGAAATTTATTAAATTTCAACAATTTTGTGATATCTTTGATATTTTCATCATATCTTTTGCTGTAAAAATTAGTATGGAATTACAATATATATATATATATTGTAATTCTTGGACTTTAATTTCTGCGAATAGAAACTAATAGTTTTATTTATGGGATAAATCTCAGGAGGGTAGGACATTGAAAATACTGAGTTCAGTAGAATTTTCATTCCTGTAAGATTTTCAGTTGTCAAGGGTTTTTGGGAGCATACCTATGGATCTGTGGTGTTGTGTTTGCCGGTTCTTTTGCAGTTTGCACCTTGTGTGCTCTTTGTAATATTAAACTTGGTTATAGTTTTGTATCTTGATAAAAGATCTAAAAGCCGGATTCCAATTAGGTATTTGATTTTTTTTTTCTTTTTCTCACAATTAAAAATTTTTCATTTATATTTCCTGCACTGCGTATGTTCCTTGTAGCAGCATCATGGTTCTTGAATTTAGTTGCGATTAATGAAATGAACTTTCCAACAATTTGGAGTTGCCAATTGCACTTTTTTGCAGACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCCGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTACTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGAAGGAAAGGTTTTGCCTGAGAGATTACGAGTTTGAGGTATCTTTAGCAACCTACAATTTTTCTGAGATTCCCCATTTGATATTTGTTTTCCAGATCTTGAATCTTTCGCAAGGAGAAGTACTTTTTATTTGAGACCCCATAGATAATATTGGTATCATTTACCTGTTTACAAACATGTCAACTCAATTAATCTCTCATTCCTTCTCAGTTAACTTCTCTACCAAGCTGATATGATTCTATTGGTCGGATAAAGTAAATAGATGAGTGGCTAGAACGATGTGAAAGTACCTTGAAAGCTACACTGATAGCAATTTTGAGATGATTCCTTAAAGATTAGGATATCATATTTAAAGTAGGTAAGAAACAAGGTCACTATCGATAGTGCAAAAGCCTGCGACTAAGGGAGGCACATGATAGGAGTAGGACCAGCAATT

mRNA sequence

ATGAAAATAGCAGTGGTTTATAGGGTTTTGCAACCACCGAACACCGAACAAATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCGGAGGAGTTTCTTGAGACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCCGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTACTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGAAGGAAAGGTTTTGCCTGAGAGATTACGAGTTTGAGGTATCTTTAGCAACCTACAATTTTTCTGAGATTCCCCATTTGATATTTGTTTTCCAGATCTTGAATCTTTCGCAAGGAGAAGTACTTTTTATTTGAGACCCCATAGATAATATTGGTATCATTTACCTGTTTACAAACATGTCAACTCAATTAATCTCTCATTCCTTCTCAGTTAACTTCTCTACCAAGCTGATATGATTCTATTGGTCGGATAAAGTAAATAGATGAGTGGCTAGAACGATGTGAAAGTACCTTGAAAGCTACACTGATAGCAATTTTGAGATGATTCCTTAAAGATTAGGATATCATATTTAAAGTAGGTAAGAAACAAGGTCACTATCGATAGTGCAAAAGCCTGCGACTAAGGGAGGCACATGATAGGAGTAGGACCAGCAATT

Coding sequence (CDS)

ATGAAAATAGCAGTGGTTTATAGGGTTTTGCAACCACCGAACACCGAACAAATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCGGAGGAGTTTCTTGAGACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCCGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTACTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGA

Protein sequence

MKIAVVYRVLQPPNTEQMDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

Homology

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy Swiss-Prot
Match: Q9XH48 (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana OX=3702 GN=TIM13 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 77
           MDS+S+P      S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1   MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 78  ESSCISRCMERYIEATSIVSGALF 100
           ESSCISRC+ERY+EAT+I+S +LF
Sbjct: 61  ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy Swiss-Prot
Match: Q9XGY5 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica OX=39947 GN=TIM13 PE=3 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-23
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 77
           MDSFS  SS  S  +     DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSES
Sbjct: 1   MDSFS--SSSGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSES 60

Query: 78  SCISRCMERYIEATSIVSGALFKT 102
           SCISRC++RYIEAT IVS ALF +
Sbjct: 61  SCISRCVDRYIEATGIVSRALFSS 82

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy Swiss-Prot
Match: Q8AVK1 (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis OX=8355 GN=timm13-b PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-12
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 21 FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCI 80
          FS   S S +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  C+
Sbjct: 8  FSVGGSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCV 67

Query: 81 SRCMERYIEATSIVSGA 98
          + CM+RY++A +IVS A
Sbjct: 68 AMCMDRYMDAWNIVSRA 84

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy Swiss-Prot
Match: Q6GPY0 (Mitochondrial import inner membrane translocase subunit Tim13-A OS=Xenopus laevis OX=8355 GN=timm13-a PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 21 FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCI 80
          FS   S + +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  CI
Sbjct: 8  FSVGGSSAGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 67

Query: 81 SRCMERYIEATSIVSGA 98
          + CM+RY++A + VS A
Sbjct: 68 AMCMDRYMDAWNTVSRA 84

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy Swiss-Prot
Match: Q6DGJ3 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=7955 GN=timm13 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-11
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 16 EQMDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 75
          E   S  +  S S +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  S
Sbjct: 2  EGFGSDFSSGSSSGKMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSTLDNS 61

Query: 76 ESSCISRCMERYIEATSIVSGA 98
          E  CI+ CM+RY++A + VS A
Sbjct: 62 EQKCIAMCMDRYMDAWNTVSRA 83

[Close]

BLAST of Cp4.1LG05g07510 vs. NCBI nr
Match: XP_022958202.1 (mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita moschata] >XP_023534506.1 mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170 bits (430), Expect = 8.39e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 18  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 77
           MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES
Sbjct: 1   MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 60

Query: 78  SCISRCMERYIEATSIVSGALFKTPH 103
           SCISRCMERYIEATSIVSGALFKTPH
Sbjct: 61  SCISRCMERYIEATSIVSGALFKTPH 86

[Close]

BLAST of Cp4.1LG05g07510 vs. NCBI nr
Match: KAG6605617.1 (Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (425), Expect = 4.86e-52
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 18  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 77
           MDSFSAP SDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES
Sbjct: 1   MDSFSAPPSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 60

Query: 78  SCISRCMERYIEATSIVSGALFKTPH 103
           SCISRCMERYIEATSIVSGALFKTPH
Sbjct: 61  SCISRCMERYIEATSIVSGALFKTPH 86

[Close]

BLAST of Cp4.1LG05g07510 vs. NCBI nr
Match: XP_022995653.1 (mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita maxima])

HSP 1 Score: 164 bits (414), Expect = 2.32e-50
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 18  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 77
           MDSFS+PSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGS+LSGSES
Sbjct: 1   MDSFSSPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSNLSGSES 60

Query: 78  SCISRCMERYIEATSIVSGALFKTPH 103
           SCISRCMERYIEATS+VS ALFKTPH
Sbjct: 61  SCISRCMERYIEATSLVSKALFKTPH 86

[Close]

BLAST of Cp4.1LG05g07510 vs. NCBI nr
Match: XP_038906948.1 (mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida])

HSP 1 Score: 159 bits (401), Expect = 2.29e-48
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 18  MDSFSAPSS-DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 77
           MDSFS+PSS  SSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 78  SSCISRCMERYIEATSIVSGALFKTPH 103
           SSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Cp4.1LG05g07510 vs. NCBI nr
Match: XP_004145880.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] >XP_008437464.1 PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis melo] >KGN49963.1 hypothetical protein Csa_000141 [Cucumis sativus])

HSP 1 Score: 158 bits (400), Expect = 3.26e-48
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 18  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 77
           MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 78  SSCISRCMERYIEATSIVSGALFKTPH 103
           SSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy TrEMBL
Match: A0A6J1H177 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX=3662 GN=LOC111459498 PE=3 SV=1)

HSP 1 Score: 170 bits (430), Expect = 4.06e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 18  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 77
           MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES
Sbjct: 1   MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 60

Query: 78  SCISRCMERYIEATSIVSGALFKTPH 103
           SCISRCMERYIEATSIVSGALFKTPH
Sbjct: 61  SCISRCMERYIEATSIVSGALFKTPH 86

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy TrEMBL
Match: A0A6J1K8L7 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111491121 PE=3 SV=1)

HSP 1 Score: 164 bits (414), Expect = 1.12e-50
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 18  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 77
           MDSFS+PSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGS+LSGSES
Sbjct: 1   MDSFSSPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSNLSGSES 60

Query: 78  SCISRCMERYIEATSIVSGALFKTPH 103
           SCISRCMERYIEATS+VS ALFKTPH
Sbjct: 61  SCISRCMERYIEATSLVSKALFKTPH 86

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy TrEMBL
Match: A0A0A0KK66 (Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=3659 GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 158 bits (400), Expect = 1.58e-48
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 18  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 77
           MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 78  SSCISRCMERYIEATSIVSGALFKTPH 103
           SSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy TrEMBL
Match: A0A1S3AUN2 (Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 GN=LOC103482878 PE=3 SV=1)

HSP 1 Score: 158 bits (400), Expect = 1.58e-48
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 18  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 77
           MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 78  SSCISRCMERYIEATSIVSGALFKTPH 103
           SSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 61  SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Cp4.1LG05g07510 vs. ExPASy TrEMBL
Match: A0A6J1I4K9 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469108 PE=3 SV=1)

HSP 1 Score: 155 bits (392), Expect = 2.62e-47
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 18  MDSFSAPSS-DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 77
           MDSFS+PSS  SSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 78  SSCISRCMERYIEATSIVSGALFKTPH 103
           SSCISRCMERYIEAT IVS ALFKTPH
Sbjct: 61  SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]

BLAST of Cp4.1LG05g07510 vs. TAIR 10
Match: AT1G61570.1 (translocase of the inner mitochondrial membrane 13 )

HSP 1 Score: 110.5 bits (275), Expect = 7.9e-25
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 77
           MDS+S+P      S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1   MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 78  ESSCISRCMERYIEATSIVSGALF 100
           ESSCISRC+ERY+EAT+I+S +LF
Sbjct: 61  ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of Cp4.1LG05g07510 vs. TAIR 10
Match: AT5G50810.1 (translocase inner membrane subunit 8 )

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 25/69 (36.23%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 27 DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSESSCISRCME 86
          D S  +  E    L  +  +A   E +  +   C+DKCIT  PGS  S SESSC++ C +
Sbjct: 2  DPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQ 61

Query: 87 RYIEATSIV 95
          RY++ + I+
Sbjct: 62 RYMDMSMII 70

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g07510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XH48	1.1e-23	65.48	Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha...	[more]
Q9XGY5	3.2e-23	69.05	Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su...	[more]
Q8AVK1	5.7e-12	45.45	Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi...	[more]
Q6GPY0	3.7e-11	44.16	Mitochondrial import inner membrane translocase subunit Tim13-A OS=Xenopus laevi...	[more]
Q6DGJ3	6.3e-11	42.68	Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=...	[more]

BLAST of Cp4.1LG05g07510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958202.1	8.39e-53	100.00	mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita mo...	[more]
KAG6605617.1	4.86e-52	98.84	Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbit...	[more]
XP_022995653.1	2.32e-50	95.35	mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita ma...	[more]
XP_038906948.1	2.29e-48	95.40	mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida...	[more]
XP_004145880.1	3.26e-48	95.40	mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] ...	[more]

BLAST of Cp4.1LG05g07510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H177	4.06e-53	100.00	Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX...	[more]
A0A6J1K8L7	1.12e-50	95.35	Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3...	[more]
A0A0A0KK66	1.58e-48	95.40	Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=36...	[more]
A0A1S3AUN2	1.58e-48	95.40	Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 ...	[more]
A0A6J1I4K9	2.62e-47	93.10	Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3...	[more]

BLAST of Cp4.1LG05g07510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61570.1	7.9e-25	65.48	translocase of the inner mitochondrial membrane 13	[more]
AT5G50810.1	4.8e-06	36.23	translocase inner membrane subunit 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 45..102 e-value: 1.7E-18 score: 67.9
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 50..99
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 39..98 e-value: 8.3E-20 score: 70.2
IPR039238	Mitochondrial import inner membrane translocase subunit Tim8/13	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 20..103
None	No IPR available	PANTHER	PTHR19338:SF14	OSJNBA0064M23.16 PROTEIN	coord: 20..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g07510.1	Cp4.1LG05g07510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0042719	mitochondrial intermembrane space protein transporter complex
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0046872	metal ion binding