Cp4.1LG05g07130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g07130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S20
Location	Cp4.1LG05: 4340684 .. 4342851 (-)
RNA-Seq Expression	Cp4.1LG05g07130
Synteny	Cp4.1LG05g07130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGTTTGGCCCGATCTAATTGAATTCGGGCCTCCAGTCCACTGATATTAATACCAAAGCCCTAGCTTCCAATCTTCATCTTCTTCGACCCTAAATCCTCCAACTGAAAAACCTAGCAGCGGTACCCACCCCTTGCGCCGGTAATCTTCTCCACCACTTCCATCGTTCCCCTTCACATGGTGTTTACTGTGCCTTTTTTCACATCTGATTCTCGGAGTTCTGAGATTTTCTTTTTTTGTTTGTTTTCAGGAAGTTAGCGATAATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAAGGGTAAATCCCTACCTCTGTGTAGAAGCAAGTTGCTTCAGTTGTTGTCTAGTGTTCAAGTGGGAATTTTATTTCTTCCAATATTGCGTTCGAACTCAAATATTGTTTACGTTTTCGGTAATAAGTGTTCTGAAATACATAGATTCTTTTACACTCGCGCTGTTACTTTTTTATGTAGTTGTTCATCGTTCATTCTTTTCACTGCTTATGTTCGTCTTGATTTATAATTTGTTATTTATCGCATTGTTATTGTATTGTGGCGTTCGGTATTTATCTGCGAAATCAACTTCGGATCACTGCTCTTGGAGAGTTCCATGTTGCGAAAATGGGGTCTTTTCTTTGACTTCACTCTGGGGGTTTTTGGGTCCTAATTTCTGTCTCTATAGATAATGGAAGTTTAATATATTGATGCCTTCAGATTATTAAATGTTATCTCAATCCTGATTGTTCACTTCCTGTTTCAATGAACAGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCGACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCGGTGAAGGTACTTTTGAATCAATGCTTTACTTAAGAGTAATAAGAATTGAGAATGATATTCTGTCTGCTTTTTGATAGAATTTAACATCAATCAATTCATTAAGACAAGTATATCTGTATGGTTATTAAGTTTTTGTCTTTAATTTGGAACCCTCTGTCACTTCGCTACCCTGGTTGTGAAGCCAACAGCTCTAGTTTTCCCCCATACCTCTCTTTCCGTCTTCCATTCGTCTTTCTCTCGGATTGGCGATTGTTATGTGTTAATTGAATATTCACCCATCATTATACTTGGGGTTCCACACCATGTAATTTAGCGTGGTAATCCTCTTCAGCCTTTAGACCTGTTATTGTTTTTCGTTCTTGTACTTTGGATCGGAGTTATTTTTATTCTTCTGTTTGAATTTGTCTTCATGAATTTGACCCTGCAGTTCTAGAAAAGAAGCCAGAAAATTTATGAACATGAAATGTATAAGTTCTTTGGCATTGTGCTTTGACGAGTTTCACAAAATGTTGAGTTTATTTATTCGGTCTTCATCTGCTGATTCAAAATTACTTAGTTCAGTATTGTTCTATAACCATTCAGTTGCTGTTGGTATTGTTGGCATGCTTTCTATGACTGCTGCCTGTTTTGTTGATGATGTCTGAGGCTCTGTGATCTTTCAGATCCAACCTGAAAACTGGTTGCCAATCATTTATTTGTTTTTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCCGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGATGTGTTCCATAATTCTGAAGTTCTTTAATCCACTCTTAGTTATTTAGGTTTCAATGTACTCTGTTGTTTCAATCTCAAATTGTTAAGGTTAATGCGTTATCCATTTTTGCCATAATTTTGAAGCTTCACTTATTTTGAGAGGAAGATTTTGTCTTCTATCATTTCGTTGATATCTTTGGATTTGTTAATTTAGATGGAAAGTTAAAATATTAATTAGTTCCTTGAGCTGCATTCGGCTTATATGCTTTATATTTCATTTAAATATTTTGATAGCTAATTTGTAAGCACATGTTCTTAATTCAAACGAAGGGCTCTGTGGTTAGATTGGCATAGGAATCTTAAATTTTGGTTGAGAATTTCCCAATCCCAA

mRNA sequence

TAATGTTTGGCCCGATCTAATTGAATTCGGGCCTCCAGTCCACTGATATTAATACCAAAGCCCTAGCTTCCAATCTTCATCTTCTTCGACCCTAAATCCTCCAACTGAAAAACCTAGCAGCGGTACCCACCCCTTGCGCCGGAAGTTAGCGATAATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAAGGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCGACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCCGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGATGTGTTCCATAATTCTGAAGTTCTTTAATCCACTCTTAGTTATTTAGGTTTCAATGTACTCTGTTGTTTCAATCTCAAATTGTTAAGGTTAATGCGTTATCCATTTTTGCCATAATTTTGAAGCTTCACTTATTTTGAGAGGAAGATTTTGTCTTCTATCATTTCGTTGATATCTTTGGATTTGTTAATTTAGATGGAAAGTTAAAATATTAATTAGTTCCTTGAGCTGCATTCGGCTTATATGCTTTATATTTCATTTAAATATTTTGATAGCTAATTTGTAAGCACATGTTCTTAATTCAAACGAAGGGCTCTGTGGTTAGATTGGCATAGGAATCTTAAATTTTGGTTGAGAATTTCCCAATCCCAA

Coding sequence (CDS)

ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAAGGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCGACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCCGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGA

Protein sequence

MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD

Homology

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BLAST of Cp4.1LG05g07130 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of Cp4.1LG05g07130 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cp4.1LG05g07130 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-50
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MAYA-AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

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BLAST of Cp4.1LG05g07130 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.8e-42
Identity = 83/114 (72.81%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 8   PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHIT 67
           P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L IT
Sbjct: 6   PGKAPV-DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRIT 65

Query: 68  TRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           TRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 66  TRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

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BLAST of Cp4.1LG05g07130 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 5   AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

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BLAST of Cp4.1LG05g07130 vs. NCBI nr
Match: XP_022929156.1 (40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022970228.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995277.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995278.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_023532340.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >XP_023551673.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >KAG7035584.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037622.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (601), Expect = 4.38e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (597), Expect = 1.84e-77
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. NCBI nr
Match: XP_008467267.1 (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_038906766.1 40S ribosomal protein S20-2 [Benincasa hispida] >XP_038906767.1 40S ribosomal protein S20-2 [Benincasa hispida] >KAA0055131.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa] >TYK20728.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 2.53e-77
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. NCBI nr
Match: KAG6605675.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (601), Expect = 2.74e-77
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 56  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 115

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 116 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 175

[Close]

BLAST of Cp4.1LG05g07130 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 234 bits (597), Expect = 5.53e-77
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

[Close]

BLAST of Cp4.1LG05g07130 vs. ExPASy TrEMBL
Match: A0A6J1I3A7 (40S ribosomal protein S20-2 OS=Cucurbita maxima OX=3661 GN=LOC111469177 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 2.12e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. ExPASy TrEMBL
Match: A0A6J1H2U8 (40S ribosomal protein S20-2 OS=Cucurbita moschata OX=3662 GN=LOC111459851 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 2.12e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. ExPASy TrEMBL
Match: A0A6J1J8F7 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=3 SV=1)

HSP 1 Score: 234 bits (597), Expect = 8.93e-78
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. ExPASy TrEMBL
Match: A0A1S4E624 (40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 1.23e-77
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. ExPASy TrEMBL
Match: A0A5D3DB09 (40S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001300 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 1.23e-77
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]

BLAST of Cp4.1LG05g07130 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG05g07130 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG05g07130 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG05g07130 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cp4.1LG05g07130 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g07130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STY6	2.6e-56	92.56	40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1	[more]
P49200	2.2e-55	91.67	40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2	[more]
P35686	3.7e-50	83.61	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2...	[more]
P23403	4.8e-42	72.81	40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1	[more]
Q3ZBH8	1.1e-41	70.09	40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g07130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929156.1	4.38e-78	100.00	40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal p...	[more]
XP_022985516.1	1.84e-77	99.17	40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma...	[more]
XP_008467267.1	2.53e-77	99.17	PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED:...	[more]
KAG6605675.1	2.74e-77	100.00	40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922646.1	5.53e-77	99.17	40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG05g07130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3A7	2.12e-78	100.00	40S ribosomal protein S20-2 OS=Cucurbita maxima OX=3661 GN=LOC111469177 PE=3 SV=...	[more]
A0A6J1H2U8	2.12e-78	100.00	40S ribosomal protein S20-2 OS=Cucurbita moschata OX=3662 GN=LOC111459851 PE=3 S...	[more]
A0A6J1J8F7	8.93e-78	99.17	40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=...	[more]
A0A1S4E624	1.23e-77	99.17	40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1	[more]
A0A5D3DB09	1.23e-77	99.17	40S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Cp4.1LG05g07130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47370.2	1.9e-57	92.56	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.1	1.9e-57	92.56	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.3	1.9e-57	92.56	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	1.6e-56	91.67	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	1.6e-56	91.67	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 79..93 score: 52.69 coord: 22..35 score: 44.51 coord: 57..72 score: 42.43
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..121
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 20..119 score: 18.389648
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..118 e-value: 2.0E-38 score: 143.7
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..118 e-value: 6.3E-28 score: 96.9
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAM	TIGR01046	TIGR01046	coord: 21..119 e-value: 1.7E-40 score: 135.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 6..121 e-value: 4.3E-49 score: 167.4
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 22..119
None	No IPR available	PANTHER	PTHR11700:SF27	RIBOSOMAL PROTEIN S10-RELATED	coord: 1..121
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g07130.1	Cp4.1LG05g07130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome