Cp4.1LG05g05770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g05770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich splicing factor SR34A-like
Location	Cp4.1LG05: 3498066 .. 3502930 (-)
RNA-Seq Expression	Cp4.1LG05g05770
Synteny	Cp4.1LG05g05770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCGCGTATTTGGAAATTACCTCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGAGGATCTCCAGCACGGAAGCCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGAGCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCACTTTCCCAGTCTTTGGTATGTTGTTTTCGTTAGTCGTTACTGCTTTTAATTACCGTATAATCAAACGACGCTCATATGCGTGCTGTGGAGGAATATGATTAGTCAGACTTGTCCAATCTTGGTGGGTAGAACGTTCGCAATCTTGGATTTGCTTTTTTCTCTTGTTGTGTTCTTCATCTGGACTAGGGTGCGGCATTAGTGGATAAGTTTTGTTGAATTTATGTTTGCGTTCTCTCGGCGTGTTAAATGGACGACACCTCGTGCTGAATTATTTCACACACTGAAGCAGCTGATTCGGTGGTTGAAATTTGATTTCTGCGTTCCTCCTAGTTTACTTCCATTGGGCTGTTGTTGTTGCTATTAATACAACACTGTAGTGGTTGGTGAACTTTAATCTAGATGCCTTTACTTAGACCTTTGGAACTGAGAAAATAGTCTACTGTGTTAGCACCTTTATTACGTTTTAAACTCGTTCCTCTTATTTCTGTAGATATGTTGATTCAAGATTGAATACACTTATCAATAACAGTATTAACCAACGTTTTGTTACCACCCAATATTAATAAATTGGCACGGAAGTCTGAATTTTTCTGTTCTTAATATCACTTCTGTGCTTTCCCTGTACTGAATTGGTGTTACAATTTTCTTCAATTTATGTCCTGTTAGTTGGGATTTATTTACGTGAAGTAAAAGGGACCCGGCTTGTTAAATTCTGTTTCCATTTTGTTAATTGATATAACATTATGGTATTTCTATTTTGTTTTTTATGTGGACTTCTCCCACTGACGACCTTAGATAATGATGTTGCCCCAAGAGTATTAACACTAATGTTTTATATGACCACGTTCTTAAATATGTTGATAAGAAAGGCAGTAAACTTTTGCACCATTCCTCTTTGGAATCGGATGCAACATAATTGAGGATTTCACTGATCATCTAAAGTTAATCCACAGAGGACATCCTGCATATTTTTTCAGGGTTGTTTTCTCAATGATGTTAAGAGAGATGAGTAAGGTAAAATTAATCATGTATGTCACTCTTGCCTCATCTCATGACACACATGCTTTCTTTATGATAGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAATGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCGAATGAGCAATGGAATTGTGGAGCACGGCTCACATGGAGGATTGCTCTCTTGGTTTGCTTTGTTGTTTTTGGTTCTACCTTATTTTAAGAGTAAAGTTGTTGATACAGATGGCAATTGTTGTAGAAGATGGTTGTTCTATCCTTTTGATGATTCATTTAATAGATGTATGATGTTATGACATAACATGTGCAGGAATAATATTTCAAACACTCGGACTAATTTGTTTCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCGGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGGTATATATTTTTAATCTTAGCATTTTTTTTATCACGGTGTCTATGAGAAAATTGTTATTTTCTCTTTTCATATTTTTAATTTTGAATACTATTCTTAATTATTTTATTTTTATTAGTGGGATGTACATTACAATGGTGATTTACGGTCACTCAATCCTATTTTGATTTTTGGTTCAGAAAGAAAATCAATTAGATGTATTTTGTGGCTCATGCATATCTAAGGTTTAATTTTTGTGATATGGAGGCTACATGATTGATAGTTCCTTTGGCAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGGTATTGCTTTTGATCTTTAGTTTGTATCTTCTTTTAGCTGCATTTGTCAAACTATTTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGCCTAAGGGTATCAACTAAGTCTTCCTTTTGCTTTACTTCCTGGTCCTACTTTTTTTTTAGTTTTTCTTATATTTTCAGTTCTTTAATAGGTTGAACTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGGGGGTATATATGAATGCTGCCTTTTAAGGAAGCATGATGCCGACAATTTCCCACGTGTAATATTTCATTAGATTCATATTAATTTCAATGGTCTAATGAATGTTTAATTTCCCTCACAGTTATTGTACGGGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGTGCTAGAGTCTTTATTGTTTAATGAAAGATGAAGTGTTTCTTTTATTGGACCATGTTGTTGTCTTTACTGGTGTAATGCTTTCAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGTTTAATCCTTATCTTTGATATTGTAATAATAACTGCTATTGTTTTTTTTTTTTTCTCTCTTTACAAGTTTCAACTAACTTCAGTACCTGAAATTTCTTCGCATTGATTTGATAATTAGATAAATATTTACTATTTGAAGTAAATGTGTCCAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTGTAAGTTTTTCTGTAAGCATGTTTCATCAGAAGTCCTGTATTATTTCAATTTGACTACTAATGTGTTTTTGTTATTTAGATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTACCCTAACATTTTTTCTCTTGCCATAGTTAATTATTTTCAATTAGCCTACTGTTGTGCTGTTTTCATTTACAGCCTAGCCTCTTTCAGTGAGCATTTTAAGAAACTGGATTTGGTTTTTTATGTCACTTGTGTTTGTGGATTACATTGGGTTGCAGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGAAGCCGAAGCCGAAGTGCGAGGCGAAATAGGAGGTGCCAGCTTTTTCTGTTTTACTGTTATCACTCTCATGGCCTCATTATTCTTTATAATGTTTTCTTGTACCATGCAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGGTACCTGTGGCCTCTGTGTGTGTGTGTTTTTTCCGGAGTTTGGATTTTCTCAAGAAATTAAGAAATAATGTTTGACATACATTTTCTGCTAAATATGCAGACGACGTTCAAAATNTTTTTTCCGGAGTTTGGATTTTCTCAAGAGATTAAGAAATAATGTATGACATACATTTTCTGCTAAATATGCAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTATGCAACGTCCAGTTTTAATGCTTCAAAAGCTGTAGACTTCATATTAATCTATTTATACTCATGGTATATAGAGCTATCTGATTGAATGATATGCGTCAATGGGTAGTGGTATTAAGAAAGAACAACCTTTGGATGAAGGTGTAGAATGAGCATGTTTGTCATATGGTGTAGGTCATTGTTAGTTTTGTTATTATTGGTGGCAGGGGTAGTTGCCAATGGGAAAGGTAGAACCCATGATGGCGTTTTGTTCCGAATGAATCTCAATATTAGCCTTGATATTATGAACCATGGGTATGTCACTCTAGTTCGAGCTTCTCGTGATGGTTCTAGATAACTAAATGTGATAATGTCATGGTACACTTCAGTTTTTTGGACACCCAAGTTACCAAAAACTTCGCCGTCATTTCGATCCTTAGATTAAAGCTCACTAGATAGTTTGAATTTAGTGAAAGTAATGGACATACGTGGGTGTAAGTATTTGTGGTTCATTATGCTGTGGAATGAGATCAGCCCTAGTCTCTTTCCTGATTTCAAAACAATGCCTTAAACTCAACTTAAAAATACTTGTAAAGTTTTTTTTAATTTAAGAATAGGAACCATAATGAAAGTAGGAATTAAATTGGTACCATGAGTCGAGTCAACTTAAGTATAGTTCAACTGATCAGTAGAATCTGTCTTTGTACTAAACTCAAACGATGATTTGATTAGATTAGGGCCATACAACTGCACTAACAGAAGCTGAAATCTCTTTTTCAGGCACGAGAAGGTAGCGGATGATAATATGAAGCTATAATGATAGGAACGGTTGTTATAATATCGACGAATGCAACATTCGGTTGGATTTCATGTTAGTTTAGGACCTATTATATGCTTGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGCTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTTACCTACCATCATTTTGTTTGGAGACATCTTAAGGTATTTGCATGTCTTAAGTTTCTTGCTCACTGCTTTTGGAATT

mRNA sequence

TAATCGCGTATTTGGAAATTACCTCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGAGGATCTCCAGCACGGAAGCCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGAGCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCACTTTCCCAGTCTTTGGAATAATATTTCAAACACTCGGACTAATTTGTTTCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCGGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGCCTAAGGGTTGAACTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGAAGCCGAAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTCATTGTTAGTTTTGTTATTATTGGTGGCAGGGGTAGTTGCCAATGGGAAAGGCACGAGAAGGTAGCGGATGATAATATGAAGCTATAATGATAGGAACGGTTGTTATAATATCGACGAATGCAACATTCGGTTGGATTTCATGTTAGTTTAGGACCTATTATATGCTTGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGCTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTTACCTACCATCATTTTGTTTGGAGACATCTTAAGGTATTTGCATGTCTTAAGTTTCTTGCTCACTGCTTTTGGAATT

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCGGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGCCTAAGGGTTGAACTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGAAGCCGAAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTCATTGTTAGTTTTGTTATTATTGGTGGCAGGGGTAGTTGCCAATGGGAAAGGCACGAGAAGGTAGCGGATGATAATATGAAGCTATAA

Protein sequence

MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREVIVSFVIIGGRGSCQWERHEKVADDNMKL

Homology

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BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.8e-104
Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS---------SRRRSKSRSGSP 264
           R++ SKS  +S+SRS+S+SRS SP K          S+ RS+SRS SP
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

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BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-79
Identity = 177/278 (63.67%), Postives = 214/278 (76.98%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--GGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++  GG GGG G G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRS---K 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRSR RS SRSRSRS  R+RS   K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 SAEQSVSRSVS-----RSRSLSPVKSSRRRSKSRSGSP 264
           S+ +S ++S S     RS+S SP   S RRS+SRS SP
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSP---SPRRSRSRSRSP 274

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BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.2e-77
Identity = 178/272 (65.44%), Postives = 209/272 (76.84%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DIRE E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYG--GSGGGGGGGGGGR-FGVSKRSE 120
           AI GRDGY+FDG  LRVELAHGGR  SS D R +Y   G GG GGG GGGR  G S+RSE
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSE 120

Query: 121 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDD 180
           YRV+V GLPSSASWQDLKDHMRK G+VCF++V  D  GT G VDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 181 TEFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSA 240
           TEF+N ++  Y+RV++Y+      SP+RGRS ++SRSR RS SRSRSRSRS  ++RS  A
Sbjct: 181 TEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 EQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPR 265
            +S+ RS ++S S SP   SR RSKSRS SPR
Sbjct: 241 -KSLRRSPAKSTSRSP--RSRSRSKSRSLSPR 265

[Close]

BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.6e-73
Identity = 175/281 (62.28%), Postives = 208/281 (74.02%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DIR+ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGR--GPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDGCRLRVE+AHGGR   PS   + S+Y  S              S+RS+Y
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR-----------APSRRSDY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G VDY+NYDDMKYAIRKLD T
Sbjct: 121 RVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDAT 180

Query: 181 EFKNPWARAYIRVKKYEGSPTRGRSRNRSRS-RSRSRSRSRSRSRSARRNRSKSAEQSV- 240
           EF+N ++ AYIRV++YE S +  RS + S+S RSRSRSR  S S S+ ++RS S  +S+ 
Sbjct: 181 EFRNAFSSAYIRVREYE-SRSVSRSPDDSKSYRSRSRSRGPSCSYSS-KSRSVSPARSIS 240

Query: 241 --SRSVSRSRSL-SPVKSSRRRSKSRSGSPREVIVSFVIIG 275
             SR +SRSRSL S V  S+ RSKSRS S     VS VI G
Sbjct: 241 PRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVSPVISG 268

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BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-56
Identity = 146/245 (59.59%), Postives = 174/245 (71.02%), Query Frame = 0


Query: 9   IYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGY 68
           IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  NFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGG---GRFG-VSKRSEYRVIVRG 128
           ++DG RLRVE    GRG          GG GGGGGGGGG   GR+G  S+RSEYRVIV G
Sbjct: 77  DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136

Query: 129 LPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFK-NP 188
           LP S SWQDLKDHMR+AGDVC+A+V  D  GT G V++   +DM YA+RKLD+T+F+ + 
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHE 196

Query: 189 WARAYIRVKKYEG--SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQ-SVSRSV 246
              AYIRV K +G  SP+ GRSR+RSRSRSRSRSRS +RSRS    RS+ + Q S   S 
Sbjct: 197 GETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRGSPQYSPRHSR 256

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BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 502 bits (1293), Expect = 3.02e-178
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265

[Close]

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496 bits (1278), Expect = 6.76e-176
Identity = 265/269 (98.51%), Postives = 265/269 (98.51%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYK----YGRILDIELKIPPRPPCYCFVEFENVR 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYK    YGRILDIELKIPPRPPCYCFVEFENVR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS 120
           DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD
Sbjct: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV 240
           DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV
Sbjct: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV 240

Query: 241 SRSVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSVSRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSVSRSRSLSPVKSSRRRSKSRSGSPRE 269

[Close]

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: KAG7035774.1 (Serine/arginine-rich splicing factor SR34A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 488 bits (1256), Expect = 1.09e-172
Identity = 259/265 (97.74%), Postives = 259/265 (97.74%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRS SRSRSRSRSRSARRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 260

[Close]

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_022996414.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996416.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996417.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima])

HSP 1 Score: 484 bits (1245), Expect = 5.58e-171
Identity = 259/267 (97.00%), Postives = 260/267 (97.38%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS--ARRNRSKSAEQSVSR 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS  A+RNRSKSAEQSVSR
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSR 240

Query: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SVSRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 262

[Close]

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_022958290.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958291.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958292.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958294.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958295.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata])

HSP 1 Score: 478 bits (1231), Expect = 6.09e-169
Identity = 255/265 (96.23%), Postives = 255/265 (96.23%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS     RRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS----VRRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 256

[Close]

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 484 bits (1245), Expect = 2.70e-171
Identity = 259/267 (97.00%), Postives = 260/267 (97.38%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS--ARRNRSKSAEQSVSR 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS  A+RNRSKSAEQSVSR
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSR 240

Query: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SVSRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 262

[Close]

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1H330 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN=LOC111459559 PE=4 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 2.95e-169
Identity = 255/265 (96.23%), Postives = 255/265 (96.23%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS     RRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS----VRRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 256

[Close]

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 453 bits (1165), Expect = 6.88e-159
Identity = 246/276 (89.13%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGG----------RF 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GGGGGGGGGG          RF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSK 240
           AIRKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRSRSRSRSRSRSR+ARRNRSK
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240

Query: 241 SAEQ-SVSRSVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SAE+ SVSRSVSRSRS SP+KSSR RSKSRSGSPR+
Sbjct: 241 SAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQ 276

[Close]

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 452 bits (1163), Expect = 1.12e-158
Identity = 246/272 (90.44%), Postives = 253/272 (93.01%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGG-------RFGVS 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GGGGGGGGGG       RFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIR 180
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS D+EGTFG VDYTNYDDMKYAIR
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAE 240
           KLDDTEFKNPWARAYIRVKKY+GSPTR RSR  SRSRSRSRSRS+SRSRSARRNRSKS E
Sbjct: 181 KLDDTEFKNPWARAYIRVKKYDGSPTRSRSR--SRSRSRSRSRSQSRSRSARRNRSKSVE 240

Query: 241 QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           +SVSRSVSRSRS SPVKSSR RSKSRSGSPRE
Sbjct: 241 RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRE 270

[Close]

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1IFY5 (serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 427 bits (1099), Expect = 7.15e-149
Identity = 233/280 (83.21%), Postives = 241/280 (86.07%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GGGGGGGGGGRFGVSKRSEYRV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRS-----------------------------RS 240
           +NPWAR YIRVKKY+GSPTR RSR+RSRS                             +S
Sbjct: 181 RNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGRDRSRSRNRSQS 240

Query: 241 RSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRSLSPVKS 251
           RSRSRSRSRSRSAR NRSKSAE+SVSRSVSRSRS SPVKS
Sbjct: 241 RSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 280

[Close]

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-105
Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS---------SRRRSKSRSGSP 264
           R++ SKS  +S+SRS+S+SRS SP K          S+ RS+SRS SP
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

[Close]

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-105
Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS---------SRRRSKSRSGSP 264
           R++ SKS  +S+SRS+S+SRS SP K          S+ RS+SRS SP
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

[Close]

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 376.3 bits (965), Expect = 2.2e-104
Identity = 208/288 (72.22%), Postives = 233/288 (80.90%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREVIV-SFV 272
           R++ SKS  +S+SRS+S+SRS SP K        +   PR+V   SFV
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDK--------KKSPPRQVFCPSFV 280

[Close]

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-80
Identity = 177/278 (63.67%), Postives = 214/278 (76.98%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--GGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++  GG GGG G G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRS---K 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRSR RS SRSRSRS  R+RS   K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 SAEQSVSRSVS-----RSRSLSPVKSSRRRSKSRSGSP 264
           S+ +S ++S S     RS+S SP   S RRS+SRS SP
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSP---SPRRSRSRSRSP 274

[Close]

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT1G02840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-80
Identity = 176/274 (64.23%), Postives = 210/274 (76.64%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--GGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++  GG GGG G G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAE 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRSR RS SRSRSRS  R+RS  A+
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREVI 268
            S  RS ++S S SP      RSKSRS SPR  I
Sbjct: 241 SS-RRSPAKSTSRSP----GPRSKSRSPSPRRWI 268

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVS6	2.8e-104	72.92	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	1.4e-79	63.67	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	2.2e-77	65.44	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	2.6e-73	62.28	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q7SXP4	1.7e-56	59.59	Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV...	[more]

BLAST of Cp4.1LG05g05770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533518.1	3.02e-178	100.00	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_023533513.1	6.76e-176	98.51	serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp...	[more]
KAG7035774.1	1.09e-172	97.74	Serine/arginine-rich splicing factor SR34A [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022996414.1	5.58e-171	97.00	serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415...	[more]
XP_022958290.1	6.09e-169	96.23	serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_0229582...	[more]

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K1U7	2.70e-171	97.00	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H330	2.95e-169	96.23	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KLR9	6.88e-159	89.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
A0A6J1C7M8	1.12e-158	90.44	serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1IFY5	7.15e-149	83.21	serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima O...	[more]

BLAST of Cp4.1LG05g05770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49430.1	2.0e-105	72.92	SER/ARG-rich protein 34A	[more]
AT3G49430.3	2.0e-105	72.92	SER/ARG-rich protein 34A	[more]
AT3G49430.2	2.2e-104	72.22	SER/ARG-rich protein 34A	[more]
AT1G02840.1	1.0e-80	63.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.2	1.0e-80	64.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 119..188 e-value: 5.1E-7 score: 39.3 coord: 8..78 e-value: 3.1E-22 score: 89.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..76 e-value: 9.8E-19 score: 67.0 coord: 120..182 e-value: 1.1E-11 score: 44.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 118..196 score: 9.848526
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.790073
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 117..195 e-value: 4.2E-23 score: 83.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..114 e-value: 1.9E-27 score: 98.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..247
None	No IPR available	PANTHER	PTHR23147:SF63	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 2..265
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..265
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 8..79 e-value: 7.42635E-45 score: 144.91
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 118..193 e-value: 2.30252E-42 score: 138.408
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g05770.1	Cp4.1LG05g05770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding