Cp4.1LG05g05440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g05440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Non-structural maintenance of chromosomes element 1 homolog
Location	Cp4.1LG05: 3245111 .. 3249750 (+)
RNA-Seq Expression	Cp4.1LG05g05440
Synteny	Cp4.1LG05g05440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCCTCCCACCATGTAAAAGCGGCTATCCAGCGCTAGGCTTCACTTCCCGGAGAGTCTTTGAAAATTTTCCCGCACAAACTCTTCTCTTCTATGAGTTTGGCTGAAATTCCCTTACAGAATCAACCTTGTCTGAATCTTTGAAGTATTAGTTGACCTTGAATTAGGGTTCAGAATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGGTTTTAATTTCTTTCTCCTTCCCCAGTTTGGTATTCAAGTTGGGAAGTAATGATTTAACGGTATGGAGACCTGCTCGATTTTTTTCTAACAAATGATCGAGGATGTCTTTCTTAGATCATCTGTAAAAGATGCGTTTGAGTTCTTATAAATTCATGTTCAAAGATTACCGAATATTTGCAATAGAATGGTTTCTGAGTATAATATGGAACCACATATTGGAAGAAATTGCATCTGGGTTCATATCCGTATACGTTTTGGAAATGTGTATTCTTATATCTTTCCTTAATCATTAGCATAAACGATTGAAAAGGAAGAGTGTTTTTAATTGATAAATTGGCCGACGGTTGAAAACTAAGATCTGTTCGATGTTTATTTTGGTGCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTAGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTGAGTTATCAACTATGGGAAGTATTGGCGTTCTTCAATAAACTGACCATTCTGCCAATTTGCTTAGCAATTAACTATGGGAACTTAGTGTTTACAATATATGCATCTTTTGTTTTATTGTCGTAGTATTTCTTATAAACAAAAAATTGCTATGTCAGGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGGTTCCTCTTGCTTGTATATGACCAATATTACCGTTTTGAGTCTATTATTGTCAAAGTCAGCTGCATATTTAACTAAGGTTGGCATCTTTGGTCTTTTGCCTCGTAAATAAGACTAATTCCAGTCACCGTTTATATAGCGTACTGTGGACAAGAACTCTTTGGAATGAGTTTGTGAGATCCCACATCGTCTAGAGAGAGGAACGAGTGTCAGTGAGGACGTTGGGTCTTGAACGGGGTGGATTGTGAGATCCAACATCGGTTGTAAAGGGGAACAAAACATTCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGTGTTTTAAAATCCTTGAGGGAAAGCCCAAAAAGGAAAAGTCAAAAAAGACAATACCTGCTAGAGGTGGGATTGGGCTGTTAGAGGGTTCTACAAGAGTATCATTTGATCTTTAGCTTATATCATTTATAGAAAGGTACACTAGTTCTTAAATTATGATTTGATACGAGTCACATTCTTCTTGAATTTAAATATTGCCAATGGAGTGCCAAGAGTTTTCTACATGGTAAAGGCTCGTAACTTATCGATCAAAATTGGATAATGGGACTGTTAGTCCGACAGTGGCATGAATGCCTTTAGAAAATATTGATACATTCACTTCTTTGTGGCCACTTCAATTAAATTTGCCTAGGAGTCACTCTCAAGTTTGTTATTTTCACTTCTTTCTTTTCCAATACCTGAATTTTTATAATTGTTAAATTTGAGACTAAGAATTTAAGGCCACACTTAAACTCTACACAATTTTGTTGCAATGCTTCTGATTTGCCCCCATTGTGGGTAAAATTGAGAACTGACAAAATCTTCCAGCTCCTCGTATTACTCTCTTTGTAGGTCTTTTCTGCTTTTTACCATATCTAAGAATCCTATTGTATAATATTCGTATCATTGTTTAACTGTTACTATTTTATCACTACCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGCTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGTTCTCTTCTTTTATGCCATTTTTGTGATTTACTAAGTCAATTCTCATTTTATCTCAATTTTTTGCATTGCATTATTTTCCCCTATGCCCACACTGATAGGAGAAGCTGAACATTTGATGAAAAGGATTTTATGTTGACAGTGCAATTGGTCTGGATTTCAACATGATCCAAACTCCGTATCGTTTTTACTCTAAAGAACCTTAACAAACCTTATTTCCTTGATGATTTATATGTTTGCTGGACTTGTTATTCACAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGGTTATATGATGTGGTACCTTCCTAATTTAATCTTTTGATCTGCAAGATCTCTTGTTCCTAACAGTTCTTTAATGGACTATTATTTAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTAAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCAGCACAAGCTTCCCAACCTCCTCCAGATACAAGAAGAATAACACGAAGTACTGCACACCAGCGGTAGGCGCTTGAAATGAGGTACGGTTATTTTGATATAGTTTCATGGATCCTAGTCCAGGAGTTGTGAAGTGTGCTGCAACTGCACCTTTTGATGTATTGTGTCAAAATTATCATCATATTCATATTTAATTGAATTTGTTGTTTTCTCGTACACAGAATTGGAATGTAAAGTGCATTACACAGCGTAAGCCAAAAGTAAGTTTCTTTTTTTTTTCTTTTCTTTTCTTTCTTTTAATCTCTTGTAAACTATAGCAGTATTCTCCATTCTTGTCGTCCACACATGCAACGAGCTGTTCCATTGTAATGATTTTTTTTTCTTTTTGTACCTAGGATATTTTGATTGTATTGAGAGTATAAATAGGTTCAATATCCTTTAAATATCCCAAATTGCAGTAACAGGCTTGACCTGCTACCAAACCTACCGCTAAAAGATATTGTCATCTTTGGGTTTTCCCATTTAAGGTTCCGCTCAAGTTTTTAAAATGCGTCTGCTAGGGAGAGTTTTTCACACCCTTATAAAGAATGTTTCGTTTCCCTCTCCAACCGATGAGGGATCTAACACCTTATTTATTTATTTTATTGTGAATGAGTGTCCGAGCCAACTTGTGTCACTGTAGAATCACAAAAAACTGTTTTGACTTTACTACATTTGGTTATTACAGAAACACGTTAGATCTAAATTTTAAGTATGTGAGTACCATTGAACTTGTTAACTCAGAAATGGTTAACTGTAGCCTCTTTATTTAACAGGTATTATGCTTTTCGGTGGTGTTATGATGAACAGTTAAACATGTATGATGGGTCTGGATTGTGTAAAAAGGTATGCAGCTCAATGCTGAAAATTTGACCGTTCATCATATTTACTATGTTTAGATTTAAGGATAAATATATCCACTCTAGAGGAGTCATAATTAAGCTGTTTAAATAGTGAGAACAAATTAGAGCACTCTGGAGAAGTCATAATAGCAGTGACATGAGATAAAAGTGGCGTCTTTGAACTGTTGTGAATAGAATCGATTATGAAACTTTAGATGGTGGGAAAGTGAAGCAATGAAAAGAATATGGCTACATGTTTTGTCTTTTTTATATAATTAGATTATCTGAATTCATTACAAAAATGTCCCTTTATGAAGCTGACTTGGCTGTGAAAGGAGAGTTTGATCTAATTAGCATCTCGTGAATAACCTTCAATCATTCCAACTAAGCTGCAGTAGGTTCCTGGTCTTTAAAGGAAGAACACATGTTACTGTAACAGTCGAAGTCTACTGCTAGTCGATATTGTATTTTTTGGACTTTTTCTTTCAGGCTTCCCCTCAAGAATTTCAAAACGCGTCTGCTAGGGAGAGGTTTCCACACACTTATAAATAATGTTTCTTTGTCCTCCCAACCGATGTGGGATCTTACAATCCATTGGGTTATGCTAATTTTTATTCTTTTTAGTTCAACAATACGTTAGGTGAAGGATTTAAACCTTTACTCTCTTGGTCGATGATACATGTTTTATATCAGTTGAATTTTATTCTTATTAGTGGGCTATGCTCACTAGAGAACGACGACTAGAACGACGAAACATCTGATGGGACGTGAGTGGATGCTTTGATGTCCTAAGGGCACACATGGCCTAAGCTTCTCAGCATTGTGGTTTGTGTCATTTGTACGACCTCTGTTTTTAAGCTTTTACCTTGT

mRNA sequence

TATCCTCCCACCATGTAAAAGCGGCTATCCAGCGCTAGGCTTCACTTCCCGGAGAGTCTTTGAAAATTTTCCCGCACAAACTCTTCTCTTCTATGAGTTTGGCTGAAATTCCCTTACAGAATCAACCTTGTCTGAATCTTTGAAGTATTAGTTGACCTTGAATTAGGGTTCAGAATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTAGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGCTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTAAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCAGCACAAGCTTCCCAACCTCCTCCAGATACAAGAAGAATAACACGAAGTACTGCACACCAGCGGTAGGCGCTTGAAATGAGAATTGGAATGTAAAGTGCATTACACAGCGTAAGCCAAAAGTATTATGCTTTTCGGTGGTGTTATGATGAACAGTTAAACATGTATGATGGGTCTGGATTGTGTAAAAAGGTATGCAGCTCAATGCTGAAAATTTGACCGTTCATCATATTTACTATGTTTAGATTTAAGGATAAATATATCCACTCTAGAGGAGTCATAATTAAGCTGTTTAAATAGTGAGAACAAATTAGAGCACTCTGGAGAAGTCATAATAGCAGTGACATGAGATAAAAGTGGCGTCTTTGAACTGTTGTGAATAGAATCGATTATGAAACTTTAGATGGTGGGAAAGTGAAGCAATGAAAAGAATATGGCTACATGTTTTGTCTTTTTTATATAATTAGATTATCTGAATTCATTACAAAAATGTCCCTTTATGAAGCTGACTTGGCTGTGAAAGGAGAGTTTGATCTAATTAGCATCTCGTGAATAACCTTCAATCATTCCAACTAAGCTGCAGTAGGTTCCTGGTCTTTAAAGGAAGAACACATGTTACTGTAACAGTCGAAGTCTACTGCTAGTCGATATTGTATTTTTTGGACTTTTTCTTTCAGGCTTCCCCTCAAGAATTTCAAAACGCGTCTGCTAGGGAGAGGTTTCCACACACTTATAAATAATGTTTCTTTGTCCTCCCAACCGATGTGGGATCTTACAATCCATTGGGTTATGCTAATTTTTATTCTTTTTAGTTCAACAATACGTTAGGTGAAGGATTTAAACCTTTACTCTCTTGGTCGATGATACATGTTTTATATCAGTTGAATTTTATTCTTATTAGTGGGCTATGCTCACTAGAGAACGACGACTAGAACGACGAAACATCTGATGGGACGTGAGTGGATGCTTTGATGTCCTAAGGGCACACATGGCCTAAGCTTCTCAGCATTGTGGTTTGTGTCATTTGTACGACCTCTGTTTTTAAGCTTTTACCTTGT

Coding sequence (CDS)

ATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTAGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGCTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTAAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCAGCACAAGCTTCCCAACCTCCTCCAGATACAAGAAGAATAACACGAAGTACTGCACACCAGCGGTAG

Protein sequence

MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPPPDTRRITRSTAHQR

Homology

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BLAST of Cp4.1LG05g05440 vs. ExPASy Swiss-Prot
Match: Q6PAF4 (Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis OX=8355 GN=nsmce1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-10
Identity = 62/282 (21.99%), Postives = 117/282 (41.49%), Query Frame = 0


Query: 8   HHTLIQALLARGPLREDHFHLLFTRITE-KSPDNDRQLFNNYLLTMNKALSFAQFELRGC 67
           H   +QAL++ G +       L     E           ++++  +N+ L      +   
Sbjct: 9   HQRFLQALMSHGIMEGSAVRALHRHCCELHKVHYMHDKLDDFVGVLNRHLQPLFMTIEKG 68

Query: 68  RNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNIAALHL 127
             + DG  YY LVN V ++ +K+ + Y+  ++  ++  +E I    S  G  ++I+ L+L
Sbjct: 69  VGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELIIL--SDNGFATSISILNL 128

Query: 128 QLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAEL----AQDQWLNCTPDGFVNLGVRSF 187
             E Q                  S  +K+K + +L     Q++WL    +G   L  R  
Sbjct: 129 ADELQ------------------SKKMKKKEVEQLLQSFVQEKWL-IGRNGEYTLHTRCI 188

Query: 188 LDLRSWFRT--NDIPS-CEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPS 247
           ++L  + R    D+   C VC +  ++++LC N  C + +H  C  K   + K+   CP+
Sbjct: 189 MELEHYIRNTYQDVAKICNVCRKVAIQSQLCEN--CGIPLHLQCAGKYF-HGKANPTCPN 248

Query: 248 CGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRD 282
           C   W    P++           ++  Q  SH + +T   R+
Sbjct: 249 CNESWPHEIPDLN----------QVSSQGPSHSQTETVRGRN 256

[Close]

BLAST of Cp4.1LG05g05440 vs. ExPASy Swiss-Prot
Match: Q6P881 (Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis OX=8364 GN=nsmce1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.9e-08
Identity = 59/279 (21.15%), Postives = 113/279 (40.50%), Query Frame = 0


Query: 3   ELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDN-DRQLFNNYLLTMNKALSFAQF 62
           +++  H   +Q L++ G +       L     E    N      ++++  +NK L     
Sbjct: 4   QINESHQRFLQVLMSHGIMESSLVRALHRHCCEVHKVNYMHDNLDDFVGVLNKHLQPLFM 63

Query: 63  ELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNI 122
           ++     + DG  YY LVN V ++ +K+ + Y+  ++  ++  +E I    S  G    I
Sbjct: 64  KIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--ISENGFAPPI 123

Query: 123 AALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAEL----AQDQWLNCTPDGFVNL 182
           + L+L  E Q                  S  +K+K + +L     QD+WL    +G   L
Sbjct: 124 SILNLADELQ------------------SKKMKKKEVEQLLQSFVQDKWL-IGRNGEYTL 183

Query: 183 GVRSFLDLRSWFRT--NDIPS-CEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSK 242
             R  ++L  +      D+   C VC++  ++ +LC N  C + +H  C   +     + 
Sbjct: 184 HTRCIMELEHYILNTYQDVAKICNVCHKIAIQCQLCEN--CGIPLHLQC-AGIYFRGIAN 243

Query: 243 RACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKR 274
             CP+C   W    P++          +++  Q  SH +
Sbjct: 244 PLCPNCKESWPHEIPDL----------SQVSSQGPSHSQ 248

[Close]

BLAST of Cp4.1LG05g05440 vs. NCBI nr
Match: XP_023533198.1 (non-structural maintenance of chromosomes element 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 634 bits (1635), Expect = 2.47e-229
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRSTAHQR
Sbjct: 301 PDTRRITRSTAHQR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. NCBI nr
Match: XP_022995424.1 (non-structural maintenance of chromosomes element 1 homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 632 bits (1631), Expect = 1.01e-228
Identity = 313/314 (99.68%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRS+AHQR
Sbjct: 301 PDTRRITRSSAHQR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. NCBI nr
Match: XP_022995422.1 (non-structural maintenance of chromosomes element 1 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 632 bits (1631), Expect = 1.13e-228
Identity = 313/314 (99.68%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRS+AHQR
Sbjct: 301 PDTRRITRSSAHQR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. NCBI nr
Match: XP_022957637.1 (non-structural maintenance of chromosomes element 1 homolog [Cucurbita moschata])

HSP 1 Score: 626 bits (1614), Expect = 4.40e-226
Identity = 309/314 (98.41%), Postives = 313/314 (99.68%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSP+NDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPENDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSA+GGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSARGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS+AAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSMAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRS+AH R
Sbjct: 301 PDTRRITRSSAHPR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. NCBI nr
Match: KAG7035803.1 (Non-structural maintenance of chromosomes element 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 626 bits (1615), Expect = 1.37e-225
Identity = 310/314 (98.73%), Postives = 312/314 (99.36%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVH YCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHPYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS+AAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSMAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRS+AH R
Sbjct: 301 PDTRRITRSSAHPR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. ExPASy TrEMBL
Match: A0A6J1K5P2 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490968 PE=3 SV=1)

HSP 1 Score: 632 bits (1631), Expect = 4.87e-229
Identity = 313/314 (99.68%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRS+AHQR
Sbjct: 301 PDTRRITRSSAHQR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. ExPASy TrEMBL
Match: A0A6J1JYV1 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490968 PE=3 SV=1)

HSP 1 Score: 632 bits (1631), Expect = 5.45e-229
Identity = 313/314 (99.68%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRS+AHQR
Sbjct: 301 PDTRRITRSSAHQR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. ExPASy TrEMBL
Match: A0A6J1GZN9 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459112 PE=3 SV=1)

HSP 1 Score: 626 bits (1614), Expect = 2.13e-226
Identity = 309/314 (98.41%), Postives = 313/314 (99.68%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSP+NDRQLFNNYLLTMNKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPENDRQLFNNYLLTMNKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSA+GGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSARGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR
Sbjct: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC
Sbjct: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDS+AAAQASQPP
Sbjct: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSMAAAQASQPP 300

Query: 301 PDTRRITRSTAHQR 314
           PDTRRITRS+AH R
Sbjct: 301 PDTRRITRSSAHPR 314

[Close]

BLAST of Cp4.1LG05g05440 vs. ExPASy TrEMBL
Match: A0A6J1DJY3 (Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021178 PE=3 SV=1)

HSP 1 Score: 555 bits (1429), Expect = 2.58e-198
Identity = 279/315 (88.57%), Postives = 291/315 (92.38%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLRED FHL+FTRIT KSPDND+QLFNNYLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQS-HVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180
           IAALHLQLENQLGD GSQS  VIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV
Sbjct: 121 IAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180

Query: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPS 240
           RSFLDLRSWFRTNDIPSCEVCNEAGVKAELC NEGCTVRVH+YCLKKMLSNKKSKRACP 
Sbjct: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLSNKKSKRACPG 240

Query: 241 CGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQP 300
           CGT+WRST  N+E KEEEDEPD R QGQSSS +RKK+RLN D+DS  NG     A ASQP
Sbjct: 241 CGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSNG-----ASASQP 300

Query: 301 PPDTRRITRSTAHQR 314
           PP+TRR+TRS+A QR
Sbjct: 301 PPETRRVTRSSARQR 310

[Close]

BLAST of Cp4.1LG05g05440 vs. ExPASy TrEMBL
Match: A0A6J1DI86 (Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021178 PE=3 SV=1)

HSP 1 Score: 555 bits (1429), Expect = 4.65e-198
Identity = 279/315 (88.57%), Postives = 291/315 (92.38%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           MRELSWRHHTLIQALLARGPLRED FHL+FTRIT KSPDND+QLFNNYLL +NKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQS-HVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180
           IAALHLQLENQLGD GSQS  VIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV
Sbjct: 121 IAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180

Query: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPS 240
           RSFLDLRSWFRTNDIPSCEVCNEAGVKAELC NEGCTVRVH+YCLKKMLSNKKSKRACP 
Sbjct: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLSNKKSKRACPG 240

Query: 241 CGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQP 300
           CGT+WRST  N+E KEEEDEPD R QGQSSS +RKK+RLN D+DS  NG     A ASQP
Sbjct: 241 CGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSNG-----ASASQP 300

Query: 301 PPDTRRITRSTAHQR 314
           PP+TRR+TRS+A QR
Sbjct: 301 PPETRRVTRSSARQR 310

[Close]

BLAST of Cp4.1LG05g05440 vs. TAIR 10
Match: AT5G21140.1 (embryo defective 1379 )

HSP 1 Score: 343.2 bits (879), Expect = 2.2e-94
Identity = 175/316 (55.38%), Postives = 228/316 (72.15%), Query Frame = 0


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M  LSW+HHTLIQAL++RGPL+E  FH +FT +T ++P   +++F+ YLL +NK LS+  
Sbjct: 1   MASLSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVH 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FEL+ CR+QYDG+V YG+VNNV+D+QSKLGTKYSVPQIAF+K I+EAIAQD +AQG IS+
Sbjct: 61  FELKACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGIIEAIAQDEAAQGCISS 120

Query: 121 IAALHLQLENQL-GDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180
             AL+++LENQ+  +A S    +PPAFKNFS++ KEKT+ EL +D+WL  T +  + LG+
Sbjct: 121 FDALNIRLENQISSEASSSQQQVPPAFKNFSMTQKEKTLDELVRDKWLCRTRERNIGLGI 180

Query: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPS 240
           RS LDLRSWFR ND+PSCEVCNEAGVKA+LC  EGC VR+H+YCLKK+LS +  KR C  
Sbjct: 181 RSLLDLRSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLSQRDDKR-CSG 240

Query: 241 CGTQW-RSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQ 300
           CG  W  S     E  EE    +   + Q+++ K K+ R  R  DS  NG S  A+ AS 
Sbjct: 241 CGKPWPLSKITKTEAAEEAMNDEEESETQATAPKAKRRRQQR--DSTENGSS-QASLAST 300

Query: 301 PPPDTRRITRSTAHQR 315
              +TRR+TRS  H R
Sbjct: 301 SGANTRRVTRSVGHSR 312

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g05440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PAF4	1.9e-10	21.99	Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis OX...	[more]
Q6P881	6.9e-08	21.15	Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicali...	[more]

BLAST of Cp4.1LG05g05440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533198.1	2.47e-229	100.00	non-structural maintenance of chromosomes element 1 homolog [Cucurbita pepo subs...	[more]
XP_022995424.1	1.01e-228	99.68	non-structural maintenance of chromosomes element 1 homolog isoform X2 [Cucurbit...	[more]
XP_022995422.1	1.13e-228	99.68	non-structural maintenance of chromosomes element 1 homolog isoform X1 [Cucurbit...	[more]
XP_022957637.1	4.40e-226	98.41	non-structural maintenance of chromosomes element 1 homolog [Cucurbita moschata]	[more]
KAG7035803.1	1.37e-225	98.73	Non-structural maintenance of chromosomes element 1-like protein [Cucurbita argy...	[more]

BLAST of Cp4.1LG05g05440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K5P2	4.87e-229	99.68	Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima ...	[more]
A0A6J1JYV1	5.45e-229	99.68	Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita maxima ...	[more]
A0A6J1GZN9	2.13e-226	98.41	Non-structural maintenance of chromosomes element 1 homolog OS=Cucurbita moschat...	[more]
A0A6J1DJY3	2.58e-198	88.57	Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charant...	[more]
A0A6J1DI86	4.65e-198	88.57	Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charant...	[more]

BLAST of Cp4.1LG05g05440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21140.1	2.2e-94	55.38	embryo defective 1379	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011513	Non-structural maintenance of chromosomes element 1	PFAM	PF07574	SMC_Nse1	coord: 8..185 e-value: 9.6E-42 score: 143.1
IPR011513	Non-structural maintenance of chromosomes element 1	PANTHER	PTHR20973	NON-SMC ELEMENT 1-RELATED	coord: 1..312
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 196..254 e-value: 2.7E-11 score: 44.8
IPR014857	Zinc finger, RING-like	PFAM	PF08746	zf-RING-like	coord: 197..240 e-value: 5.5E-9 score: 36.2
IPR014857	Zinc finger, RING-like	CDD	cd16493	RING-CH-C4HC3_NSE1	coord: 196..242 e-value: 3.83186E-14 score: 63.6029
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 84..193 e-value: 2.7E-17 score: 64.7
None	No IPR available	GENE3D	3.90.1150.220		coord: 5..81 e-value: 3.8E-13 score: 51.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..268
None	No IPR available	PANTHER	PTHR20973:SF1	BNAANNG27900D PROTEIN	coord: 1..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g05440.1	Cp4.1LG05g05440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030915	Smc5-Smc6 complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity