Cp4.1LG05g04880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g04880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cyclin-dependent protein kinase inhibitor SMR13-like
Location	Cp4.1LG05: 2917061 .. 2917408 (-)
RNA-Seq Expression	Cp4.1LG05g04880
Synteny	Cp4.1LG05g04880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

mRNA sequence

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Coding sequence (CDS)

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Protein sequence

MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV

Homology

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-12
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQN---------QIPPPQNDVVQFPDDDGGGY 67
           MA++  R  + ++  KK+ ++  KK Q PQ+          +P P    V       GG 
Sbjct: 1   MASKKAR--KPNRAEKKLTRSCFKK-QVPQHNNINTNTIYSVPSPSPAAVL---TSPGGC 60

Query: 68  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
            TPKA++ RIPE+LTCPP PKKQR   +C  RR  I FFAPPE+ELFF
Sbjct: 61  CTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 19  SKLNKKIKKTTTKKPQQP--QNQIPP----------------PQNDVVQFPDDDGGGYST 78
           SK  K +++TTT++ ++   +N  PP                P +     P     G  T
Sbjct: 3   SKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCT 62

Query: 79  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIA 110
           P  E+ RIPE+LTCPP PKKQ+   +C+ RR  IAFFAPP++ELFF  A
Sbjct: 63  P--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFVFA 109

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
           +TP A+  RIP ++ CPP PKK++     S+   P  FF+PP+LE  F
Sbjct: 56  TTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSPPDLETVF 101

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
           +TP A   RIP +  CP  PKK++P   CS+      +F+PP+LE  F
Sbjct: 57  TTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.9e-04
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIA--FFAPP-ELELFFFIAR 111
           +TP A+  +IPE+L CPP P+K+RP   C   RS +   FF PP +LE  F   R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKC---RSNVVREFFTPPSDLETVFLRRR 112

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: KAG6605917.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (572), Expect = 8.22e-74
Identity = 114/118 (96.61%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD---GGG 60
           MAPSG KMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD   GGG
Sbjct: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDGGGGG 60

Query: 61  YSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 115
           YSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV
Sbjct: 61  YSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 118

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: KAG7035865.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223 bits (569), Expect = 2.60e-73
Identity = 114/121 (94.21%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD------ 60
           MAPSG KMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD      
Sbjct: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60

Query: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 115
           GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS
Sbjct: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: XP_023532997.1 (cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218 bits (556), Expect = 1.64e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGGYSTPKAERFR 67
           MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGGYSTPKAERFR
Sbjct: 1   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGGYSTPKAERFR 60

Query: 68  IPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 115
           IPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV
Sbjct: 61  IPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 108

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: XP_022958378.1 (cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita moschata])

HSP 1 Score: 215 bits (547), Expect = 4.55e-70
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGG-YS 60
           MAPSGAKMATRPRRNIRTSK+NKKIKKTTTKKPQ   NQIPPPQNDVVQFPDDDGGG YS
Sbjct: 1   MAPSGAKMATRPRRNIRTSKVNKKIKKTTTKKPQ---NQIPPPQNDVVQFPDDDGGGGYS 60

Query: 61  TPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 115
           TPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV
Sbjct: 61  TPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 113

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: XP_022996084.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita maxima])

HSP 1 Score: 204 bits (520), Expect = 6.17e-66
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD------GGGYSTP 67
           MATRPRRNI  SKLNKK+KKTTTKKPQQPQNQIPPPQNDVVQFPDDD      GGGYSTP
Sbjct: 1   MATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPPQNDVVQFPDDDFDNDDVGGGYSTP 60

Query: 68  KAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 115
           KAERFRIPEILTCPPGPKKQRP+SDCSFRRSPIAFFAPPELELFFFI+RPDISV
Sbjct: 61  KAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFFISRPDISV 114

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy TrEMBL
Match: A0A6J1H2X7 (cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=3662 GN=LOC111459621 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 2.20e-70
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGG-YS 60
           MAPSGAKMATRPRRNIRTSK+NKKIKKTTTKKPQ   NQIPPPQNDVVQFPDDDGGG YS
Sbjct: 1   MAPSGAKMATRPRRNIRTSKVNKKIKKTTTKKPQ---NQIPPPQNDVVQFPDDDGGGGYS 60

Query: 61  TPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 115
           TPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV
Sbjct: 61  TPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 113

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy TrEMBL
Match: A0A6J1K7R4 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 GN=LOC111491400 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 2.99e-66
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD------GGGYSTP 67
           MATRPRRNI  SKLNKK+KKTTTKKPQQPQNQIPPPQNDVVQFPDDD      GGGYSTP
Sbjct: 1   MATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPPQNDVVQFPDDDFDNDDVGGGYSTP 60

Query: 68  KAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 115
           KAERFRIPEILTCPPGPKKQRP+SDCSFRRSPIAFFAPPELELFFFI+RPDISV
Sbjct: 61  KAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFFISRPDISV 114

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy TrEMBL
Match: A0A6J1D3Z6 (cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3673 GN=LOC111017372 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 3.49e-42
Identity = 81/116 (69.83%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD-GGGYS 60
           MAPSG +MA R R N ++ KL KK+KKT  KK QQ +   P  +NDVVQ  +DD  GG S
Sbjct: 1   MAPSGGRMAARTRGNSQSLKL-KKMKKT--KKQQQQKLPAPATENDVVQCSNDDIDGGCS 60

Query: 61  TPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 115
           TP+AERFRIPEI+TCPP PKKQRP+SDCSFRRSPIAFFAPPELELFFF A PDI V
Sbjct: 61  TPRAERFRIPEIVTCPPAPKKQRPVSDCSFRRSPIAFFAPPELELFFFFALPDIPV 113

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy TrEMBL
Match: A0A0A0L0Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 1.28e-41
Identity = 83/121 (68.60%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MAPSGAKMATRP-RRNIRTSKLNKKIKKTTTKK--PQQPQNQIPPPQNDVVQFPDD-DGG 60
           MAPSGA+MATR  RR +   KL KKIKKTT KK  PQ+ +  +P  QND+V+F D+   G
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARP--DIS 115
           G STPKAER RIPEILTCPP PKK R +SDCS RRSPIAFFAPPELELFFF+A P  DIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

[Close]

BLAST of Cp4.1LG05g04880 vs. ExPASy TrEMBL
Match: A0A6J1JET4 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=LOC111484378 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 4.37e-40
Identity = 84/122 (68.85%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQN--QIPPP-QNDVVQFPDDDG-- 60
           MAPSG KMATR R N+   KLNKKIKKT  ++ QQ Q   QIP    ND V F DD    
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAVIPNDAVHFTDDCSDI 60

Query: 61  -GGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFF-IARPDI 115
            GG STPKAERFRIPEILTCPP PKK RP SDCS RRSPIAFFAPPELELFF  +  PDI
Sbjct: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120

[Close]

BLAST of Cp4.1LG05g04880 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-13
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQN---------QIPPPQNDVVQFPDDDGGGY 67
           MA++  R  + ++  KK+ ++  KK Q PQ+          +P P    V       GG 
Sbjct: 1   MASKKAR--KPNRAEKKLTRSCFKK-QVPQHNNINTNTIYSVPSPSPAAVL---TSPGGC 60

Query: 68  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
            TPKA++ RIPE+LTCPP PKKQR   +C  RR  I FFAPPE+ELFF
Sbjct: 61  CTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Cp4.1LG05g04880 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 8.6e-12
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 19  SKLNKKIKKTTTKKPQQP--QNQIPP----------------PQNDVVQFPDDDGGGYST 78
           SK  K +++TTT++ ++   +N  PP                P +     P     G  T
Sbjct: 3   SKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCT 62

Query: 79  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIA 110
           P  E+ RIPE+LTCPP PKKQ+   +C+ RR  IAFFAPP++ELFF  A
Sbjct: 63  P--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFVFA 109

[Close]

BLAST of Cp4.1LG05g04880 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
           +TP A+  RIP ++ CPP PKK++     S+   P  FF+PP+LE  F
Sbjct: 56  TTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSPPDLETVF 101

[Close]

BLAST of Cp4.1LG05g04880 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
           +TP A   RIP +  CP  PKK++P   CS+      +F+PP+LE  F
Sbjct: 57  TTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Cp4.1LG05g04880 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-05
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIA--FFAPP-ELELFFFIAR 111
           +TP A+  +IPE+L CPP P+K+RP   C   RS +   FF PP +LE  F   R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKC---RSNVVREFFTPPSDLETVFLRRR 112

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IWB3	6.4e-12	43.52	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q3ECS5	1.2e-10	39.45	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	2.2e-04	43.75	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SAD3	2.9e-04	41.67	Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q29Q81	4.9e-04	45.45	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cp4.1LG05g04880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605917.1	8.22e-74	96.61	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
KAG7035865.1	2.60e-73	94.21	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
XP_023532997.1	1.64e-71	100.00	cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita pepo subsp. pepo...	[more]
XP_022958378.1	4.55e-70	95.69	cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita moschata]	[more]
XP_022996084.1	6.17e-66	90.35	cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g04880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2X7	2.20e-70	95.69	cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1K7R4	2.99e-66	90.35	cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1D3Z6	3.49e-42	69.83	cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3...	[more]
A0A0A0L0Q1	1.28e-41	68.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1	[more]
A0A6J1JET4	4.37e-40	68.85	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Cp4.1LG05g04880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20898.1	4.5e-13	43.52	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51355.1	8.6e-12	39.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60783.1	1.6e-05	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10690.1	2.0e-05	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G40460.1	3.5e-05	45.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	PANTHER	PTHR33142:SF8	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 14..110
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 14..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g04880.1	Cp4.1LG05g04880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus