Cp4.1LG05g04860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g04860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Sacchrp_dh_NADP domain-containing protein
Location	Cp4.1LG05: 2866554 .. 2869204 (+)
RNA-Seq Expression	Cp4.1LG05g04860
Synteny	Cp4.1LG05g04860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTACCTGCACTGCAGGCAATGGTGGTACTGGTCCATCTATATTAGCTACTAGTTTCTTGCTGCTGGGAGAGAAGGTGGTCGCCTATAATAAAGGTTAGTGTCAAAACTGAAACTTGTTTGTCTATGTAATATTCCAGCACTTGATGATTTTGCTGGAGAGCGTGTATCCATGAGGGTGAGAATCAAATTTCTTATATTTATACACACAAATTTCTGGTGAAAGAAGACATAGCTTTATCAACCATTTGATAATTTGATTTCTGATTTATCAGGTGTTGGAAGTAGTTGATTTATGAAGAATGCCTCTTTTTCTTTTTCTGTTTTTGGTTTAATTCTGATTAGATGAGGCTACTTCATGGATAGCAGGTGACGAGAAGGAAAGTCGTGTAGTTTATGTAAGAATGTGATTTCTCTGGGCACAAACATGATTTTAGAGAATTGCTTTCAACAATGAAAACAGGTATGAATCTCCAATTTCTTCTTTGTTTCTAGAAAGTATCTGACATTTATTTAAAGAAAACAATGACTACTTCATTGTACTCACACTATAGTATCTGAAATTTTTGGAAAGTTATGGTGAGAGGAATGGCATTTTTCAAGATGTTTGTGAAGAAGAACAAATTTCCAATCACAGTTTTCAAAACAATTCTTTTTTCTGGATAATGTTCTTTGAAAGTTCACTCTCGAGTGTAGAGATTTTCTTTTTTATTTTGAAAAATCAAGAATATCATAGCTTTCCACCCAATTAACTCCTAAATTAAAAGTTTCATCTCTAAAAAACCCATAATGTAAAATTGGCTCAACTTTGAGAAACAATAGATAGAATTTCAGTTCATTCTTCTGTTTGTGAGGTAGAAAGATGATGTCCACTAAGAACTCATCATTCGTTATATTGTCTTACCTTTGATCATCATCCCTCGTTCTTATTTGACCTAAAACCAATTATTTAAAAGCACTTTCTAGATGGAGAAAATAAAATGACGCCATCAATCAAAAAGATTGTGCTAATCACCCAGATCCTGTGAATCAAGAATCAAGTAGAACACTACAAACACTAATAATACAAGATCGAAAACCTTCAACAACGAGCGAAAGTCTAAATTTAGTTTCAAAAGCCAAAATTATCTTGATAATGTATGTTCCCAACCAAGCTTAAATCTATCAAACACAACAATTTCTGAAGTGGCATTCATGAAATTTCATTCCAAAATATCATTTACAACATGAACTACTCATGTCAAAGGTGTTCACAGTCAATCTAATGTTCTCTTTTTCTTCGTTTCTTTTTCAGAATACACCATTCTTTAAAAAACGAAGAGAACAAAATCAGACCACATATAGTCATCAGCATGAAGATCTGGAATAGTACTTCGTCAGCCACAGATCAAATTCGACATAAACGTAAAAAGAAGAGGGTACATCGAACACACGAAAATGTTATGCAGAAAATGGTAATTACCAGATTGTTGAAGCTCTAAACTGTAGTAGTTATCCTTATTCTTGTGTTAGCATCCTGTCAGAGACTCAGCCAGCCATTAGATGTTGTGACACACCTGTTTACTCATCTCTTCTCTGTCTGTACATGGCACTGTGAACAACTTCAAACTTCCTCTGTGGAACACCTACATTTTACTTCCTTTGTGGCATCAAGGTTGTTGCGTTAAGGATCATGCCTCCACCTCCTTTTCAAGATTTAGCCATCAGGAATTCCCATGAGCCAATTGTCAACTTTTGGCTGTCTCACCCTGAGGGGACAAACTGCAGCTGGATTTCTTGATAGAATGATCAATTACTTGGTGCACCCTAGCCATTTGAAAGCCTGAATTATATCCTGATGTGTTCGCATAGTTCTTATGGATACCTGGTTGATCGAGTAAATTCTGATCCGCTGGTTGATCGAGTAAATTCTGATCCGCGAGAACCATAAGATCTCCATAGATCTTGCCACTGAGGCCTAACACTATTTCTTTCGAACTGATGACTTTGATGAACATCTGTATGTGATCTAGGGGTGCTGCTTGCATTGCGTTTCTTTTGGGCAGTCCTCATCTCTTCTTCTGCATCATATCGGGAGCGCTGTAAAAACAGATCAGTTTAGGCTACAATCATCTGGTAAAATGTATTGAGCTTGATAACATAGCCTAACACGATATGCAAGAGCGACTCGTGTAAAACTAGAGTTGCCACTGGAGGCTGCCTGCGGTGGGGGTACTTCTAGATCTAAACAATGCATGGACATATTGCACTTGAGGCAGAAAAGAGAATGAAAATAATGGTCAACAATGAAGAAACCTTTCTCTTGAAATTTCTATAAAAAAGTTGGGGAAGAACTCCCTTTTGGGTACCTTAATAGGATCTGAGAGTACATTATATGCCTCTCCAATCATTTTAAAAAGTTTATCAGCATCCATGGGGACTCCTCCGGCTATATCCTTCCATAGCACGTTATCTCCGTTGTCTGCTCTAGCCAAGGACTGACCAGCCTAAACGAACGAACAACCCATATTAAGAAAGCACAGACACAAATAAGCATATCTTCAAAGTACACTAAATTAAACCTTGTCTGGATGGTATCTGAGAGCAGCTTTCCTGTATGCCTTCTTAATTTCAGCTGAAGATGCAGATGGATCAACTCCCCTGCCATCAAAAA

mRNA sequence

TCTACCTGCACTGCAGGCAATGGTGGTACTGGTCCATCTATATTAGCTACTAGTTTCTTGCTGCTGGGAGAGAAGGTGGTCGCCTATAATAAAGGTGACGAGAAGGAAAGTCGTGTAGTTTATGTAAGAATAATACACCATTCTTTAAAAAACGAAGAGAACAAAATCAGACCACATATAGTCATCAGCATGAAGATCTGGAATAGTACTTCGTCAGCCACAGATCAAATTCGACATAAACGTAAAAAGAAGAGGGTACATCGAACACACGAAAATGTTATGCAGAAAATGCTGAAGATGCAGATGGATCAACTCCCCTGCCATCAAAAA

Coding sequence (CDS)

TCTACCTGCACTGCAGGCAATGGTGGTACTGGTCCATCTATATTAGCTACTAGTTTCTTGCTGCTGGGAGAGAAGGTGGTCGCCTATAATAAAGGTGACGAGAAGGAAAGTCGTGTAGTTTATGTAAGAATAATACACCATTCTTTAAAAAACGAAGAGAACAAAATCAGACCACATATAGTCATCAGCATGAAGATCTGGAATAGTACTTCGTCAGCCACAGATCAAATTCGACATAAACGTAAAAAGAAGAGGGTACATCGAACACACGAAAATGTTATGCAGAAAATGCTGAAGATGCAGATGGATCAACTCCCCTGCCATCAAAAA

Protein sequence

STCTAGNGGTGPSILATSFLLLGEKVVAYNKGDEKESRVVYVRIIHHSLKNEENKIRPHIVISMKIWNSTSSATDQIRHKRKKKRVHRTHENVMQKMLKMQMDQLPCHQK

Homology

[Close]

BLAST of Cp4.1LG05g04860 vs. NCBI nr
Match: KAG6605927.1 (hypothetical protein SDJN03_03244, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 2.90e-14
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   STC----TAGNGGTGPSILATSFLLLGEKVVAYNKGDEKESRVVYVRI 44
           STC    + GNGG GPS+LATSFLLLGEKVVAYNKGDEKESRVVYVR+
Sbjct: 132 STCWRDESRGNGGAGPSLLATSFLLLGEKVVAYNKGDEKESRVVYVRM 179

[Close]

BLAST of Cp4.1LG05g04860 vs. NCBI nr
Match: KAG7035876.1 (hypothetical protein SDJN02_02675 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 1.14e-10
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 5   AGNGGTGPSILATSFLLLGEKVVAYNK--------GDEKESRVVYVRI 44
           A NGG GPS+LATSFLLLGEKVVAYNK        GDEKESRVVYVR+
Sbjct: 158 ASNGGAGPSLLATSFLLLGEKVVAYNKDEATSWIAGDEKESRVVYVRM 205

[Close]

BLAST of Cp4.1LG05g04860 vs. NCBI nr
Match: XP_020243534.1 (uncharacterized protein LOC109821787 [Asparagus officinalis])

HSP 1 Score: 56.2 bits (134), Expect = 1.98e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4   TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
           TAG+GG GP+ILATSFLLLGE V+AYNKGDE
Sbjct: 156 TAGSGGAGPTILATSFLLLGEDVIAYNKGDE 186

[Close]

BLAST of Cp4.1LG05g04860 vs. NCBI nr
Match: KDO50442.1 (hypothetical protein CISIN_1g014177mg [Citrus sinensis])

HSP 1 Score: 55.5 bits (132), Expect = 3.20e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4  TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
          TAG GG GP+ILATSFLLLGE+VVAYNKG+E
Sbjct: 67 TAGTGGAGPTILATSFLLLGEEVVAYNKGEE 97

[Close]

BLAST of Cp4.1LG05g04860 vs. NCBI nr
Match: KDO50443.1 (hypothetical protein CISIN_1g014177mg [Citrus sinensis])

HSP 1 Score: 55.5 bits (132), Expect = 3.24e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4   TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
           TAG GG GP+ILATSFLLLGE+VVAYNKG+E
Sbjct: 71  TAGTGGAGPTILATSFLLLGEEVVAYNKGEE 101

[Close]

BLAST of Cp4.1LG05g04860 vs. ExPASy TrEMBL
Match: A0A2P2LG79 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.67e-07
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4  TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
          TAG GG GP+ILATSFLLLGEKVVAYNKG++
Sbjct: 50 TAGTGGAGPTILATSFLLLGEKVVAYNKGEK 80

[Close]

BLAST of Cp4.1LG05g04860 vs. ExPASy TrEMBL
Match: A0A453KBA5 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.75e-07
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4   TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
           TAG+GG GP+ILATSFLLLGE V+AYNKG+E
Sbjct: 93  TAGSGGAGPTILATSFLLLGEDVIAYNKGEE 123

[Close]

BLAST of Cp4.1LG05g04860 vs. ExPASy TrEMBL
Match: A0A287QZG7 (Sacchrp_dh_NADP domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.28e-06
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4   TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
           TAG+GG GP+ILATSFLLLGE V+AYNKG+E
Sbjct: 123 TAGSGGAGPTILATSFLLLGEDVIAYNKGEE 153

[Close]

BLAST of Cp4.1LG05g04860 vs. ExPASy TrEMBL
Match: A0A2P2LGA1 (Sacchrp_dh_NADP domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.36e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4   TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
           TAG GG GP+ILATSFLLLGEKVVAYNKG++
Sbjct: 206 TAGTGGAGPTILATSFLLLGEKVVAYNKGEK 236

[Close]

BLAST of Cp4.1LG05g04860 vs. ExPASy TrEMBL
Match: A0A067EGV3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014177mg PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.55e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 4  TAGNGGTGPSILATSFLLLGEKVVAYNKGDE 34
          TAG GG GP+ILATSFLLLGE+VVAYNKG+E
Sbjct: 67 TAGTGGAGPTILATSFLLLGEEVVAYNKGEE 97

[Close]

BLAST of Cp4.1LG05g04860 vs. TAIR 10
Match: AT1G50450.1 (Saccharopine dehydrogenase )

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 4   TAGNGGTGPSILATSFLLLGEKVVAYNKGDEKESR 39
           TAG GG GP+ILATSFLLLGE+V AY +G++ + R
Sbjct: 203 TAGTGGAGPTILATSFLLLGEEVTAYKQGEKVKLR 237

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04860 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g04860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605927.1	2.90e-14	81.25	hypothetical protein SDJN03_03244, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035876.1	1.14e-10	75.00	hypothetical protein SDJN02_02675 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_020243534.1	1.98e-06	83.87	uncharacterized protein LOC109821787 [Asparagus officinalis]	[more]
KDO50442.1	3.20e-06	83.87	hypothetical protein CISIN_1g014177mg [Citrus sinensis]	[more]
KDO50443.1	3.24e-06	83.87	hypothetical protein CISIN_1g014177mg [Citrus sinensis]	[more]

BLAST of Cp4.1LG05g04860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2LG79	1.67e-07	83.87	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A453KBA5	7.75e-07	80.65	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A287QZG7	1.28e-06	80.65	Sacchrp_dh_NADP domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=1...	[more]
A0A2P2LGA1	1.36e-06	83.87	Sacchrp_dh_NADP domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 ...	[more]
A0A067EGV3	1.55e-06	83.87	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014177mg PE=4 SV=1	[more]

BLAST of Cp4.1LG05g04860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50450.1	1.4e-06	65.71	Saccharopine dehydrogenase	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g04860.1	Cp4.1LG05g04860.1	mRNA