Cp4.1LG05g04300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g04300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 2435662 .. 2442090 (+)
RNA-Seq ExpressionCp4.1LG05g04300
SyntenyCp4.1LG05g04300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTTTTACTTGATTCGTCATCGGCAAAAACCTGCATTCGAATTGCGTATGATTCATAGGAATACTGTGGCTCATGGAAGAATTCCAACGTGAAGTTTTTGACTAACCTCGTTGACTTGAAAATATGTCCCGTTTAATGGGAATTTGCCTCTCATGGCTGTTCTACAGGGTATCTGGAACAATATTGGTTCATATATTGGCGGATTTACGAAGTAGTCAATTAATAACATCTTGGAAGTTTGCTTTATCACTTACCAAAATCGTTCCGTGAACTGTTCCACTGTTTTGTTTCCTGAGAATGTTGCAGGATGAACATGATCCTTCACTGCAAAGCTCTCCCGTTTCCTGGTACGTGCATTTTGTATTGGGTGGCTCAGATGAATCTATAGTTTCACCTGAAAACATCAATTATACATTGAGCACTGGATGTTTCTGATCATTATATTGGTTTATTGAGATTTGAACGTTTACCGAATTTTCGAATCAGTACCTGGTGACCATATGCACAAAAGGTACGGGCAAGCATCATTTAGCTCTCGTGGTTCTAGCTGTAGACAGACAGATAGAAACGAACTATTACACGACTATAAATGATTGATTTTCCGGTCAGGTTAGTGGGAAATGTTTTTACCTCATATAGGAGAGGATGTGTATCTGGAAGTTCATAGCTGCATCATATCAGTTGCAATTAGTTTCTTTTCTAATATGTGTTTTAGAGAATACTCGTTTCCATAATAGCTGAAACTCGTTGCTTAACGGCCATACTTACGCTTGATGTTCTGTCCTCAGACGATCTACATGCTTCAGTTTGCGCATTGGGATGGAAGCAACTCTGTTGTTCAAAGGAATCAAAGCTCCAGTGATGTTATTGTCCATGCAGTTCTGTGAAGTTGTAACTCGTCCGGAGTCGAGTCTGATTACTGGAACATCATCAGAATCATACTCATATAAATCTTCAATGTCTGTTGATTGTGATTCATCATATGCATGTTCAGGTGATCGAGGCACTTCGATGATAGGTTCACAATTGATGGTTTCATATCTCGATTCTGAAGATGGATTGCCTTCGATATGGAGTACTGGTGCTGGATTCATCACTTGAGCAGTGCCTTCATACCTTTTTTCCGGGATCATTGTACTTACCATTCTTTTCTCTGGCAATCCAGGTAATGCGAGCCTTGCACTGTTTTGATTATAGGACCTCAGAAGAGAATACAATCATAGAACCTATAAATCTCTATAATTTGCACACAACCTCACAACACTTGGCTTTCATTTGAAGTGTTCTGCCACAAAATCAACCTCTTCACAGGACAATGCAAGGTCAGATCTGTTATAATTTCTGATTGCGCTTGTTGGAAGCAACAAAAATGAGTTTTCAATCCTTCCAAATTTGTTTTATACACAACTCCGTATAAAATCTGCTTTTATTTCTGAATTGAAAATCCATGCACTAATTTGTCCATACCTTGCATATTTGCTAGCGTAGTGCCGACATTCGGCCCTCAGCGGACAAGCATTGCAGTTTGGTTTTCTCTTCGTGCAAAAGACCTGCAGATGAGTGTTCAAGGTAAATAATCAAATACTTCACTTAAAATGTTTTATATAGAATCAAATGATGCTCTGGCCATATACGCTTGCTAGGATCATAAGGTTTACCTTTCCAAATGTTATCAGTTGATAGTGCAGTTCATACCTATAGTAAAAAGCATGAAGTGTGAACTTTTGCTTGTTTGATAGACGTTATAAAGTACATATTTATTTTTAAACTGGGAAGTAATAGAGAATTACAGAGTTCGTTGGTCAAGTGTACTGAGCCTTGGCCATAGATATTTTTGAATAGAATCCATCATAGGGAACCTACACAGAAGACATGTTAACGTCTCTCTATTGGTCATATGAATGATGCTTATTCTTTATATTCTATACTTACGTCTCTAGAAGATGAATCTGAACCTCCTCAGGCAGCGGTTCAAGAGGAACCCATCCTATTCGAACTGCGATTCGACCAACATTTACGTCCACCTCATTCAAAGAAAAATAGGAGTTATGCATGGAATACATATCTTACAAATCATAAATTCATATATATCTTACTGGAAAGGCAACTTGCTGAAGTGATAAAAGCCTTACGCATTCTACACTTTTCAATCCTAGCCCATGTATCTCCAATAGATATGCCCTGCAGGCACGCACAAGTAATATATCTAAATGTGACATTTAAAAAATGAAAGTTCTTTTGTTCTTGGAATGTTAAGAGTTTCAGCCTTCAAAGTAGACTTACTTAACATCATTTGGAGGAGCATATCTAAGCCATTCGAGGTCAATGTGGCCATGCATTGTAGCTGTTCGATTAATAAACTCCTGTAGGAAAAAGAAACGATGTGGAAAGTCAGAGACCTTAGCCCCAAGCCTTTTGTTTATTTGCATTATTACCTTAGAACACCCTTTTTATTTTTTTTATTTCACTTTAGTTTCTTAAACCTTAATTCTTCTTGCTATGGTGTTATGTTGGCCACGTTCCTTGATGGCAGCTGCAATCTTAATAGGGTCTGCTGACCCAACTGCTTCCCAGTCCACAGAATCCATGTGATCCCTACTTCTTGGCTCATGAACAGAATAGGCTCTCCTCATACTGTCCCATTTTTCCTTTAGACTATTCCAATCCATTTCTGGCTTCATTTTACTATTTTTGGCTGTCCCCTTAGAAATATCTGTCCTTTTTTCATCACTAAAATCATTAGAATCTCTGTCTTCCAAATCATTGACATCACCAGTGTGTTGAATCTCTTGATTTTGAAACCTTTCAGAGCTGCCAATAGAACTCCGAGATTTCTCATTTGGCGTGACTTGTAAATCAACTTCCACCTCTTTGGATTCTAAAATTTCATTTTCTTGATTGCTTTTATGCGATGATGTGCTAGTTGGACTGCTGCTATAGGGCTCTTGGACAGAGGTTGATTTATTAGGATGGAGCACTGTGTTATCTGTGCCATCCATGTTATCTGTGCCATCCAAATTCCTAAACAAACCTATTCCACAATCATCTTCGAAACATGTAGATGAGTGAAGGGTATCATCAAGGCTTTTTTTTAGCGATGATCCCATAAAATCTTGAGACGAAATTGCATCATTCGCAGATATTAATTGTTCAACTTCTTCACGATCTCCTGTTTTCTTGTTACTCTCCAACATACTGTCATTGTTCCATTCGTTTTCACACAGAAAATATCCTTTGTTTCTTTGAGTTGATTGTTGAGTGCAGAAAACGTCCTGGCCCTGATAATATTCTGTATGGTTTCTTGTTGCACAGAGGGGGAATGTTGCAGCAAGTGACATATAAGCAGAACTGTGAAGAACAAGAGAAGTAAAGGATATAAGCTTCATTTGGTATATTTCACTAGTGCTAGAATCATCTACAGGAAACGGTTATGTTTCTTTACCTTGAAAGATGGTCAGAGACATTTTGAGTAAGAAAAACGCCAACCACAGAATCCACCACCGAACCTTTCCATGGTGAAAAACGCCTATCGCCTGCACATCAAAAAAGTTCTGCTTTTATACAAAGATTTTGAGCATTTATTGCAGCTCGCAATGTATGACAAACACACTAACTTATTTTACCTTTTTGTAAGCTTAGTTCTATTCCAGTTCTGCTTCATTAATAACGGATATACTACATATCATACAGTTACATGTAATAAGCTTTACCTAAAATTAGATGCATTCTAGCATTAAAAGCATCTATCCGTACACGGAAAATTTCCCTTTCATGTGCCCACCACTTTTCGGTATTGACGTCAACTTTTTCTGAGCCAAAATCACTCGCTTCTTGGGTTATTAGCGTCCACATAGTAATGTCTCTTGGGTCAAGGTTCACTCTACCCAACAATTTTTTCTTAGTTGAGTTCAATGATTCAGGATGGGGAACTATTGCGCCTTCCACGCCATGAACATAACTTAGATTGTGCTCTCCCTTGCTGGTTTTCTTTCCTTGTTTTCGTGCATATGGAACAATTTGCTTTTCATGGCCCGAAGCAGTTCCTTCTTTCTGTTGTGAATTAACGTGCGTTAGACCAGTGCTGTTACTGATGCCTGCATAAATGAGAATATTTCCGAACTGTGATTTATTGTAATGACTGTCTGCAGGATAAGGAACAAAAACCTTCTTACTGCAAGAATTTGTTTGCTTTATTATTTGCTGGTCGATAACTGGATTAGTGCCTTTTATAATCAGAAACAAACCCGAACAGTGCCGGATGCAAACATTATGCAGAAAAAAAAAAAAAAAAGATACCTCTTGTTTCAAGTGTAAGCCTGATATGCTCATGATTATTTCTTGTTCCTTCACTTCTATTCCATAATATTACATTGAGGGCAGGTCTCGTTTCATTTACACTTCCTGGATGGGTGAAGTCCTGTTGCCTGATCAAGCTTCTTCCGCTGCCCACATCATGAAAACCTGAAAACTCGGTAACATTTTGCCTTCAATTTATTTGCATATTGGGCTGAAAACTGAAAAGAAGTCTTAAATCAAGACATTTCTTTTAGTTCTTTATTCATTAGTGCCTCATAATAGCAAAATAACAGTAAGCTACTTATGGGATAAGAAGAGTAGTTTTTCCCGTAGCAACAGTGAAGTACCTGTAATAATTCTAGGAAGTGAAATGCCTGTCCCTGATGGGTTCTTTTCATTTATAAGCTTCAAATTAGTCAAAAACTGTCTGATATCAAGCCATCTCATTGTTTGCTTACCGTTGTGACCTGCAAGGAAATGCTGTCAGCATTTACCTATAAATCGTTCTTAAAGATAAATTAAATACCACTGCTGAAATGAAGTTGCCAACATGAACATAGCTTAATTGTCCTACTTAATGTTTCAATACGAATTGCATTGCCAATCTTCCAGAAAGTCCCCTCCCTAAAGATAGCTGCAAACTTGAAAGTTACTGCAGGGAGCGTTGTCTGACCCGACCAATCTGAAAAAGCCACAAACTTGTTGCATTCAAGAACCAAGAGGCCAATGGTAATATATGTTTTCTCATGGTAAAGCGAAAAGAAATTACCCTCTGCTATGGCTGTTTCCACAGATGCTTCTCTATCGTTAGAACTTAATGCAGAATGAGATTGACAGCCATCATCTGAATAATACATTTCAGTTGTTTGATCTGATACTTTTGTTGGTGTTCCTTCAATCTCCAGTTTCTGTTTTGTGGTCTCATCATCATCATCTGAAATATCATAAAATTTCATTAGGACGTTTAAATTCATAAGTGCATTATTAGCGTAGACATTAGAATATAATACCTCTGCCATTGTTTTTTATTGCTTTTTTTGTGTTGGAGGCATGTTTATGTGTGTTTCTCCGCAATTGTTTACAGACTTCAATTGCTGAAGCTACGTTGCACCTTCTAACCATTGGACTCCTTTTTCTCTTGCAGTAGATGAATGGCTGTAGATTGTTTCTTGATCCCTCGCCTTTTTTATTTCCAGACCTCAATCCATACGGTGTTCTCTTAGTGATTTTTGCTGGCCTTCTCCTTGAACTCCTTTTTCTCCTGCATTTCTGTGGTATTCCATGGAGCCATTCATAAAGCCTCCCGGTCGACCCGACTTTGGTTTGGATAACTGTACTATTTGAATGATCGTCCGCGGATTCCTTTTCATCAAGGCTAGCAACTTCTGCTGAAGCTTTCTCACTCACAGTAAAAGTGGGTGAAGCTTTCTCATTCTTCAGTTCATTTCCAATTAAGACTAGATCTTTGCAACTAACCGTAGCATTATTGAGTAAAGCTTTCTCATTTACCAGATCTCTGCAACTATCTATAATATGAACTTTATCTATAATATGAACTTGATCATTTTCTTGTACAGAATAACTGTTCTGCTGACATCCTCTAACAGTAGTAACAATTTTGTTGGTTTTTGGTCTCGGCTTTGGCTTTACTCTCGGCTTTGGCTTTGGCTTTGGCCTTACTCTCGGCGGCTTTGGCTTTACTGGTTGGGTTGATCTCTTCCTTGCTCTGCCTTCTCCGATCACTTTTGGCCGGTACATTTTCTTCTTTTTCTTTTTTCTGCGTGTTTCAATCTGTGGTCTCTTTCTCTTCAACTCCAATGGAGTTGAAATGGTTGGTTCTATTTCCAATCCATTTTCGTGTTTATCAGATGAAAATGATATTTCAGCCGCCATTGTAGTTGAAATGGTTGGTTCCATTTCCAATCCATTTTCGTGTTTATCAGAATTTCTAGATGGAAATGATATTTCAGCTATTGGAGTTGAAATGGTTGATTCCATTTCCAATTCATTTTCGTGTTTCCCATTTCTGGAAATGATATTTGGAAAGGATGTTTCAGCCATTGGAGGTGTATGAATCACCACTCAAATATCAGTTTAAATATGGAATATTGTGATTTGAAAGATTTAG

mRNA sequence

ATGGGGATGAACATGATCCTTCACTGCAAAGCTCTCCCGTTTCCTGATTTGAACGTTTACCGAATTTTCGAATCAGTACCTGGTGACCATATGCACAAAAGACGATCTACATGCTTCAGTTTGCGCATTGGGATGGAAGCAACTCTGTTGTTCAAAGGAATCAAAGCTCCAGTGATGTTATTGTCCATGCAGTTCTGTGAAGTTGTAACTCGTCCGGAGTCGAGTCTGATTACTGGAACATCATCAGAATCATACTCATATAAATCTTCAATGTCTGTTGATTGTGATTCATCATATGCATGTTCAGGTGATCGAGGCACTTCGATGATAGGTTCACAATTGATGCGTAGTGCCGACATTCGGCCCTCAGCGGACAAGCATTGCAGTTTGGTTTTCTCTTCGTGCAAAAGACCTGCAGATGAGTGTTCAAGTTTCTTAAACCTTAATTCTTCTTGCTATGGTGTTATGTTGGCCACGTTCCTTGATGGCAGCTGCAATCTTAATAGGATTTAG

Coding sequence (CDS)

ATGGGGATGAACATGATCCTTCACTGCAAAGCTCTCCCGTTTCCTGATTTGAACGTTTACCGAATTTTCGAATCAGTACCTGGTGACCATATGCACAAAAGACGATCTACATGCTTCAGTTTGCGCATTGGGATGGAAGCAACTCTGTTGTTCAAAGGAATCAAAGCTCCAGTGATGTTATTGTCCATGCAGTTCTGTGAAGTTGTAACTCGTCCGGAGTCGAGTCTGATTACTGGAACATCATCAGAATCATACTCATATAAATCTTCAATGTCTGTTGATTGTGATTCATCATATGCATGTTCAGGTGATCGAGGCACTTCGATGATAGGTTCACAATTGATGCGTAGTGCCGACATTCGGCCCTCAGCGGACAAGCATTGCAGTTTGGTTTTCTCTTCGTGCAAAAGACCTGCAGATGAGTGTTCAAGTTTCTTAAACCTTAATTCTTCTTGCTATGGTGTTATGTTGGCCACGTTCCTTGATGGCAGCTGCAATCTTAATAGGATTTAG

Protein sequence

MGMNMILHCKALPFPDLNVYRIFESVPGDHMHKRRSTCFSLRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACSGDRGTSMIGSQLMRSADIRPSADKHCSLVFSSCKRPADECSSFLNLNSSCYGVMLATFLDGSCNLNRI
Homology
[Close]
BLAST of Cp4.1LG05g04300 vs. NCBI nr
Match: KAG7035956.1 (hypothetical protein SDJN02_02756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181 bits (459), Expect = 5.23e-55
Identity = 99/128 (77.34%), Postives = 107/128 (83.59%), Query Frame = 0 

Query: 3   MNMILHCKALPFPDLNVYRIFESVPGDHMHKRRSTCFSLRIGMEATLLFKGIKAPVMLLS 62
           MNMILHCKALPFPDLNVYRIFE+VPGDHMHK      SLRIGMEATLLFKGIKAPVMLLS
Sbjct: 27  MNMILHCKALPFPDLNVYRIFEAVPGDHMHK------SLRIGMEATLLFKGIKAPVMLLS 86

Query: 63  MQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACS----GDRGTSMIGSQLMRSA 122
           MQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACS    G + TS+     +R+ 
Sbjct: 87  MQFCEVVTRPESSLITGTSSESYSYKSSMSVDCDSSYACSVPTFGPQRTSIAVWFSLRAK 146

Query: 123 DIRPSADK 126
           D++ S  +
Sbjct: 147 DLQMSVQE 148

[Close]
BLAST of Cp4.1LG05g04300 vs. NCBI nr
Match: KAG6606007.1 (hypothetical protein SDJN03_03324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101 bits (251), Expect = 3.79e-24
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 16 DLNVYRIFESVPGDHMHKRRSTCFSLRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESS 75
          DLNVYRIFE+VPGDHMHK      SLRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESS
Sbjct: 34 DLNVYRIFEAVPGDHMHK------SLRIGMEATLLFKGIKAPVMLLSMQFCEVVTRPESS 87

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g04300 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g04300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035956.15.23e-5577.34hypothetical protein SDJN02_02756, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6606007.13.79e-2488.33hypothetical protein SDJN03_03324, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG05g04300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g04300 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04300.1Cp4.1LG05g04300.1mRNA