Cp4.1LG05g04150 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g04150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 2262522 .. 2262941 (-)
RNA-Seq ExpressionCp4.1LG05g04150
SyntenyCp4.1LG05g04150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGAGACCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGANCCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTACGTGATGCTGACCGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAATGTGTTTCTTGA

mRNA sequence

ATGAGCAAGAGACCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGANCCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTACGTGATGCTGACCGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAATGTGTTTCTTGA

Coding sequence (CDS)

ATGAGCAAGAGACCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGANCCTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGATCGGATGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTACGTGATGCTGACCGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAATGTGTTTCTTGA

Protein sequence

MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEMIVTRSMXLVDEHVWRIRVGIGIGCVGGEFLLVVVGWGSGGGRDDSNEIDDACRVSGVLHVRDADRQELPMSQMQEQCVS
Homology
BLAST of Cp4.1LG05g04150 vs. NCBI nr
Match: KAG7035922.1 (hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (304), Expect = 2.26e-32
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0

Query: 1  MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
          MSKRPRSSE EVALRVDMNRSPTTSSMSMFGGSESG GSDVSVESSCLSLWDGEVEEDEM
Sbjct: 1  MSKRPRSSETEVALRVDMNRSPTTSSMSMFGGSESGLGSDVSVESSCLSLWDGEVEEDEM 60

Query: 61 IVTRSMXLV 69
          IVTRSM LV
Sbjct: 61 IVTRSMMLV 69

BLAST of Cp4.1LG05g04150 vs. NCBI nr
Match: KAG6605971.1 (hypothetical protein SDJN03_03288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121 bits (304), Expect = 1.11e-31
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0

Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
           MSKRPRSSE EVALRVDMNRSPTTSSMSMFGGSESG GSDVSVESSCLSLWDGEVEEDEM
Sbjct: 86  MSKRPRSSETEVALRVDMNRSPTTSSMSMFGGSESGLGSDVSVESSCLSLWDGEVEEDEM 145

Query: 61  IVTRSMXLV 69
           IVTRSM LV
Sbjct: 146 IVTRSMMLV 154

BLAST of Cp4.1LG05g04150 vs. NCBI nr
Match: KAG7010337.1 (hypothetical protein SDJN02_27130, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 4.66e-09
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 1  MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
          MSKR RSSE +V LRV++NR P+ ++ S+ G   SGS SD+SVE+SCL  W+G VEE+  
Sbjct: 1  MSKRSRSSEPKVELRVNLNRLPSPATSSLSG---SGSSSDISVENSCLG-WEGGVEEE-- 60

Query: 61 IVTRSMXLV 69
          I+TRSM LV
Sbjct: 61 IITRSMMLV 63

BLAST of Cp4.1LG05g04150 vs. NCBI nr
Match: KAG6570472.1 (NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 9.45e-08
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
           MSKR RSSE +V LRV++NR P+ ++ S+ G   SGS SD+SVE+SCL  W+G VEE+  
Sbjct: 486 MSKRSRSSEPKVELRVNLNRLPSPATSSLSG---SGSSSDISVENSCLG-WEGGVEEE-- 545

Query: 61  IVTRSMXLV 69
           I+TRSM LV
Sbjct: 546 IITRSMMLV 548

BLAST of Cp4.1LG05g04150 vs. NCBI nr
Match: KGN48041.1 (hypothetical protein Csa_002820 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 2.19e-07
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0

Query: 1  MSKRPRSSEIEVALRVDMNRSPT----TSSMSMFGGSESGSGSDVSVESSCLSLWDGEVE 60
          MSKR RSSE EV LRV++NRSPT    +SS+S F GS SGS S++SV +SCLS  +GE  
Sbjct: 1  MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGS-SEISVGNSCLSC-EGEEH 60

Query: 61 ED--EMIVTRSMXLV 69
              E I+TRSM LV
Sbjct: 61 GGRLEEIITRSMMLV 73

BLAST of Cp4.1LG05g04150 vs. ExPASy TrEMBL
Match: A0A0A0KJX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.06e-07
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0

Query: 1  MSKRPRSSEIEVALRVDMNRSPT----TSSMSMFGGSESGSGSDVSVESSCLSLWDGEVE 60
          MSKR RSSE EV LRV++NRSPT    +SS+S F GS SGS S++SV +SCLS  +GE  
Sbjct: 1  MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGS-SEISVGNSCLSC-EGEEH 60

Query: 61 ED--EMIVTRSMXLV 69
              E I+TRSM LV
Sbjct: 61 GGRLEEIITRSMMLV 73

BLAST of Cp4.1LG05g04150 vs. ExPASy TrEMBL
Match: A0A5D3BBS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00200 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.88e-07
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MSKRPRSSEIEVALRVDMNRSPTTSS----MSMFGGSESGSGSDVSVESSCLSLWDGEVE 60
          MSKR RSSE EV LRV++N+SPTTSS    +S FGGS SGSG       SCLS  +GE +
Sbjct: 1  MSKRSRSSEAEVELRVNLNQSPTTSSSSSSVSTFGGSGSGSGD------SCLSC-EGEDQ 60

Query: 61 ED---EMIVTRSMXLV 69
               E I+TRSM LV
Sbjct: 61 HGGRLEEIITRSMMLV 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7035922.12.26e-3295.65hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6605971.11.11e-3195.65hypothetical protein SDJN03_03288, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010337.14.66e-0957.97hypothetical protein SDJN02_27130, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570472.19.45e-0857.97NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia... [more]
KGN48041.12.19e-0758.67hypothetical protein Csa_002820 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KJX51.06e-0758.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1[more]
A0A5D3BBS43.88e-0756.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04150.1Cp4.1LG05g04150.1mRNA