Cp4.1LG05g04040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g04040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Poly(A)-specific ribonuclease
Location	Cp4.1LG05: 2258189 .. 2259001 (-)
RNA-Seq Expression	Cp4.1LG05g04040
Synteny	Cp4.1LG05g04040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTTGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAGATGAGGGATGTGTACTTTGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

mRNA sequence

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTTGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAGATGAGGGATGTGTACTTTGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

Coding sequence (CDS)

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTTGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAGATGAGGGATGTGTACTTTGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

Protein sequence

MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY

Homology

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 4.5e-109
Identity = 194/271 (71.59%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 6   LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVR---PAFHPSRPSDHYL 65
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +          P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 66  LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 125
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 126 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 185
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 186 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 245
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 246 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.9e-109
Identity = 186/261 (71.26%), Postives = 219/261 (83.91%), Query Frame = 0


Query: 13  REVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALN 72
           REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P D Y LLK+NVDAL+
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 73  LIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERN 132
           LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPDSI+LL+RQGIDFERN
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 133 RAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILK 192
              GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTRR+LP  L EF ++++
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 193 AFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 252
             FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAGSDSLLTWHAFQ+MRD
Sbjct: 200 VLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRD 259

Query: 253 VYFGKDGPEKHAGVLYGLEVY 271
           +YF +DGPEKHAGVLYGLEV+
Sbjct: 260 LYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.4e-80
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 69
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 250 DVYFGKDGPEKHAGVLYGLEV 270
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.1e-78
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 290.0 bits (741), Expect = 2.7e-77
Identity = 141/262 (53.82%), Postives = 193/262 (73.66%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +PF++MDTEFPG+V RP     +    HY  LK+NV
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRF-IWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 129
           + L +IQ+GLT SD  GNLPT GTD ++ IW+FNFR+FD+  D++A DSI+LL++ GIDF
Sbjct: 70  NILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129

Query: 130 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 189
            +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP     F +
Sbjct: 130 VKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFE 189

Query: 190 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 249
           ++  +F  +VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K+
Sbjct: 190 MISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKL 249

Query: 250 RDVYFGKDGPEKHAGVLYGLEV 270
           ++ +F     EK++GVLYGL V
Sbjct: 250 QENFF-IGSMEKYSGVLYGLGV 268

[Close]

BLAST of Cp4.1LG05g04040 vs. NCBI nr
Match: XP_022957732.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 563 bits (1450), Expect = 1.29e-202
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60
           MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH
Sbjct: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60

Query: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120
           YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL
Sbjct: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120

Query: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180
           KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS
Sbjct: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180

Query: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240
           RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT
Sbjct: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240

Query: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270

[Close]

BLAST of Cp4.1LG05g04040 vs. NCBI nr
Match: XP_023534188.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_023534282.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 563 bits (1450), Expect = 7.62e-202
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60
           MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH
Sbjct: 49  MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 108

Query: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120
           YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL
Sbjct: 109 YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 168

Query: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180
           KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS
Sbjct: 169 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 228

Query: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240
           RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT
Sbjct: 229 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 288

Query: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 289 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 318

[Close]

BLAST of Cp4.1LG05g04040 vs. NCBI nr
Match: KAG7035921.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 563 bits (1450), Expect = 8.52e-202
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60
           MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH
Sbjct: 52  MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 111

Query: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120
           YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL
Sbjct: 112 YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 171

Query: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180
           KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS
Sbjct: 172 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 231

Query: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240
           RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT
Sbjct: 232 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 291

Query: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 292 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 321

[Close]

BLAST of Cp4.1LG05g04040 vs. NCBI nr
Match: XP_022995114.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 561 bits (1445), Expect = 4.75e-201
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60
           MLIQHLSSPIHVREVWDFNLHHEFRLIN LVDRYPFISMDTEFPGVVVRPAFHPSRPSDH
Sbjct: 51  MLIQHLSSPIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 110

Query: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120
           YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL
Sbjct: 111 YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 170

Query: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180
           KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS
Sbjct: 171 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 230

Query: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240
           RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT
Sbjct: 231 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 290

Query: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 291 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 320

[Close]

BLAST of Cp4.1LG05g04040 vs. NCBI nr
Match: XP_038901771.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 466 bits (1199), Expect = 1.96e-164
Identity = 225/263 (85.55%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSR--PSDHYLLLKSN 69
           I +R+VWDFNL +EF LIN L  R+PFISMDTEFPGVV+RPA H  R  PSDHYLLLKSN
Sbjct: 3   IQIRQVWDFNLDYEFNLINHLFHRFPFISMDTEFPGVVIRPALHRPRLRPSDHYLLLKSN 62

Query: 70  VDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 129
           VDALNLIQVGLTLSDADGNLPTLGTD  FIWEFNFRDFDV RDLHAPDSI+LLKRQGIDF
Sbjct: 63  VDALNLIQVGLTLSDADGNLPTLGTDNCFIWEFNFRDFDVVRDLHAPDSIELLKRQGIDF 122

Query: 130 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 189
           ERNR HGV S+RF+ELLMSSGLLCN SV+WVTFHSAYDFGYLVKILTR KLP+RL +FLK
Sbjct: 123 ERNRIHGVPSSRFAELLMSSGLLCNDSVTWVTFHSAYDFGYLVKILTRTKLPARLHDFLK 182

Query: 190 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 249
           IL+  FGNKVYDVKHMMRFCD LYGGL+RVAKTLAVDRAVGK HQAGSDSLLTW AFQKM
Sbjct: 183 ILRGLFGNKVYDVKHMMRFCDGLYGGLDRVAKTLAVDRAVGKSHQAGSDSLLTWQAFQKM 242

Query: 250 RDVYFGKDGPEKHAGVLYGLEVY 270
           RDVYF KDGPEKHAGVLYGLEVY
Sbjct: 243 RDVYFFKDGPEKHAGVLYGLEVY 265

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy TrEMBL
Match: A0A6J1GZY2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3 SV=1)

HSP 1 Score: 563 bits (1450), Expect = 6.25e-203
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60
           MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH
Sbjct: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60

Query: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120
           YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL
Sbjct: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120

Query: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180
           KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS
Sbjct: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180

Query: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240
           RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT
Sbjct: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240

Query: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy TrEMBL
Match: A0A6J1K4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 SV=1)

HSP 1 Score: 561 bits (1445), Expect = 2.30e-201
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60
           MLIQHLSSPIHVREVWDFNLHHEFRLIN LVDRYPFISMDTEFPGVVVRPAFHPSRPSDH
Sbjct: 51  MLIQHLSSPIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 110

Query: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120
           YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL
Sbjct: 111 YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 170

Query: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180
           KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS
Sbjct: 171 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 230

Query: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240
           RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT
Sbjct: 231 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 290

Query: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 291 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 320

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy TrEMBL
Match: A0A5C7IWS3 (Poly(A)-specific ribonuclease OS=Acer yangbiense OX=1000413 GN=EZV62_002127 PE=3 SV=1)

HSP 1 Score: 445 bits (1144), Expect = 3.26e-156
Identity = 211/271 (77.86%), Postives = 233/271 (85.98%), Query Frame = 0


Query: 7   SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS-------RPSD 66
            S I +REVWDFNL  EF LI +++D YPFISMDTEFPG++ RP  +P+       RPSD
Sbjct: 5   DSMIRIREVWDFNLESEFELIRQVIDHYPFISMDTEFPGIIYRPTVYPTKPFHLQRRPSD 64

Query: 67  HYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDL 126
           HY LLKSNVDALNLIQVGLTLSD+ GNLP LGT+ +FIW+FNFRDFDV  D HAPDSIDL
Sbjct: 65  HYKLLKSNVDALNLIQVGLTLSDSSGNLPDLGTENQFIWQFNFRDFDVASDAHAPDSIDL 124

Query: 127 LKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLP 186
           L+RQGIDFERNR  GVDS RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTR+ LP
Sbjct: 125 LRRQGIDFERNREEGVDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRQSLP 184

Query: 187 SRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLL 246
           S LDEFL I + FFGNKVYDVKHMMRFC SL+GGL+RVA+TLAV+RAVGKCHQAGSDSLL
Sbjct: 185 SGLDEFLTIQRVFFGNKVYDVKHMMRFCKSLFGGLDRVAQTLAVNRAVGKCHQAGSDSLL 244

Query: 247 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           TWHAFQKMRDVYF  DG EKHAGVLYGLEVY
Sbjct: 245 TWHAFQKMRDVYFVNDGAEKHAGVLYGLEVY 275

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy TrEMBL
Match: A0A061GVA7 (Poly(A)-specific ribonuclease OS=Theobroma cacao OX=3641 GN=TCM_041300 PE=3 SV=1)

HSP 1 Score: 445 bits (1144), Expect = 3.91e-156
Identity = 209/271 (77.12%), Postives = 235/271 (86.72%), Query Frame = 0


Query: 7   SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRP-------SD 66
           S P+ +REVW  NL  EF LI++++D YPFISMDTEFPG+V++P   PSRP       SD
Sbjct: 10  SKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRPYHSQLQPSD 69

Query: 67  HYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDL 126
           HY  LKSNVDALNLIQVGLTLSD+ GNLP LGTD +FIWEFNF DFDV RD HAPDSI+L
Sbjct: 70  HYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGTDTQFIWEFNFSDFDVERDAHAPDSIEL 129

Query: 127 LKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLP 186
           L+RQGIDFE+NR  G+DS RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP
Sbjct: 130 LRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRELP 189

Query: 187 SRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLL 246
             LDEFL+IL+ FFGN+VYD+KHMMRFC SLYGGL+RVA+TL V+RAVGKCHQAGSDSLL
Sbjct: 190 GDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDSLL 249

Query: 247 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           TWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 250 TWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]

BLAST of Cp4.1LG05g04040 vs. ExPASy TrEMBL
Match: A0A7N2KLU9 (Poly(A)-specific ribonuclease OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 5.80e-155
Identity = 212/277 (76.53%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 2   LIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRP---- 61
           +I     PI +REVW  NL  EF LI  ++DRYP+ISMDTEFPG+V RP+  PS+P    
Sbjct: 1   MISEKEKPITIREVWAGNLESEFELIRDVIDRYPYISMDTEFPGLVFRPSVDPSKPYYYR 60

Query: 62  ----SDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHA 121
               SDHY +LKSNVD LNLIQVGLTLSDA GNLP LG+  RFIWEFNF+DFDV RD HA
Sbjct: 61  PLQPSDHYRVLKSNVDVLNLIQVGLTLSDAAGNLPDLGSGNRFIWEFNFKDFDVARDPHA 120

Query: 122 PDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKIL 181
           PDSI LL RQGIDFE+NR  GVDS+RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKIL
Sbjct: 121 PDSIALLMRQGIDFEKNREEGVDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 180

Query: 182 TRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQA 241
           TRR LPS LDEFLKIL+ FFGN+VYDVKHMMRFC+SLYGGL+RVA+TL VDRAVGKCHQA
Sbjct: 181 TRRSLPSELDEFLKILRVFFGNRVYDVKHMMRFCNSLYGGLDRVARTLEVDRAVGKCHQA 240

Query: 242 GSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270
           GSDSLLTWHAFQKMRDVYF  DGPEKHAGVL+GLEVY
Sbjct: 241 GSDSLLTWHAFQKMRDVYFVNDGPEKHAGVLFGLEVY 277

[Close]

BLAST of Cp4.1LG05g04040 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 395.6 bits (1015), Expect = 3.2e-110
Identity = 194/271 (71.59%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 6   LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVR---PAFHPSRPSDHYL 65
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +          P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 66  LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 125
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 126 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 185
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 186 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 245
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 246 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Cp4.1LG05g04040 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 395.2 bits (1014), Expect = 4.2e-110
Identity = 186/261 (71.26%), Postives = 219/261 (83.91%), Query Frame = 0


Query: 13  REVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALN 72
           REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P D Y LLK+NVDAL+
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 73  LIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERN 132
           LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPDSI+LL+RQGIDFERN
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 133 RAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILK 192
              GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTRR+LP  L EF ++++
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 193 AFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 252
             FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAGSDSLLTWHAFQ+MRD
Sbjct: 200 VLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRD 259

Query: 253 VYFGKDGPEKHAGVLYGLEVY 271
           +YF +DGPEKHAGVLYGLEV+
Sbjct: 260 LYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Cp4.1LG05g04040 vs. TAIR 10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 299.3 bits (765), Expect = 3.1e-81
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 69
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 250 DVYFGKDGPEKHAGVLYGLEV 270
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of Cp4.1LG05g04040 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 292.7 bits (748), Expect = 2.9e-79
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]

BLAST of Cp4.1LG05g04040 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 292.7 bits (748), Expect = 2.9e-79
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS6	4.5e-109	71.59	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	5.9e-109	71.26	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	4.4e-80	55.17	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SAI2	4.1e-78	54.96	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	2.7e-77	53.82	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Cp4.1LG05g04040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957732.1	1.29e-202	100.00	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 ...	[more]
XP_023534188.1	7.62e-202	100.00	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
KAG7035921.1	8.52e-202	100.00	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_022995114.1	4.75e-201	99.63	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]
XP_038901771.1	1.96e-164	85.55	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]

BLAST of Cp4.1LG05g04040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZY2	6.25e-203	100.00	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3...	[more]
A0A6J1K4S7	2.30e-201	99.63	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 S...	[more]
A0A5C7IWS3	3.26e-156	77.86	Poly(A)-specific ribonuclease OS=Acer yangbiense OX=1000413 GN=EZV62_002127 PE=3...	[more]
A0A061GVA7	3.91e-156	77.12	Poly(A)-specific ribonuclease OS=Theobroma cacao OX=3641 GN=TCM_041300 PE=3 SV=1	[more]
A0A7N2KLU9	5.80e-155	76.53	Poly(A)-specific ribonuclease OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g04040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22250.1	3.2e-110	71.59	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	4.2e-110	71.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	3.1e-81	55.17	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	2.9e-79	54.96	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	2.9e-79	54.96	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..269 e-value: 2.0E-95 score: 321.0
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 17..135 e-value: 3.6E-8 score: 33.1
None	No IPR available	PANTHER	PTHR10797:SF48	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 6..270
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 6..270
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g04040.1	Cp4.1LG05g04040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0016740	transferase activity