Cp4.1LG05g04020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g04020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 2324396 .. 2328851 (+)
RNA-Seq ExpressionCp4.1LG05g04020
SyntenyCp4.1LG05g04020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGATGCAAGTTCTTATCAGGTACTTTGATCAGTTGAGTAATACAATACCTACAACAATAGCTCGTGAATTAGAATCAGCTGGGAAAAAAATTAATGAACAAGAACTTTCTCGGGAGAAGTTCGGTATGCTACTCATTAAGTCCTCGGCCTTGATCGCAAAGCGAAAAGGCGCAATTGTACAAGATCCCATCCTTTTCAAATATCTCTCCACCTTGTTCTTGTAATTTGGTATCCTTGTAAACCCCTCTCTTCCCATATAATTTGAGCTGCAGAACACACGTAAAAGTAACCGGTAAGAACTCTAAATATTAATCTACAGTATGTTCAAAATGATATTCGTACTTCAGCTGCGAGGGATTCAAGTGCCTCTTCAAATGGATCTTGTTTGTCCCAAGGGATCCCTTTGCCTTCGACAGTGAGATCTGTTACAATATCATAAGCTTCCAGTGGTTGAGCTTCTTGCTTCTCAATGCTATCAAGCAGCCAAGCTTCTCGAACGACCCGTATTCCTCTTTCACTGGAAAAGAGAACATTATTGGCATGAAATTTGAAAACCAAACAGCCCTGAAAACTGCATGTATCTTGGATAGAAGGAAAGAAACGCACACTGCTTCTGCAACTTTGGAAGATCCACCACGTTCTCTCTCGGCAGGAGAGACAACCAAACAACTGACACCTGCAAAGATTTGTTCATTAAAACCGCGACCGATTACAGCGAGGAACAGAATCAAGGACTCGATGAGAACAAAGAGATTGTACCTATAACAGAATTGTTAACAGTCCCTCCATGCTTCTCAATTTCTTTTCTCCAGTAATGCTGAGTTAACAGTCATTGAAAACTTGTTAGCCATCACAATAAAAACTCGTGCCATGCTAGTTCAATCCCAACCCATCGACTTACATGAGTTCTCGAAAGACGACCAGAGAGTGAAATGGTCATTCCTGAGAAGGGTTTATCTGATTGGCCAAGATTTCTCTTACGACGTTGACCTGGATTTTGATACTTCTTTATCAACTACACCATAAAGAAACAGAGTTCAACTAAGAAAATTGTTGGTACGATGATGTCTGGCTATCTAGAAAAAGAAGAAACAAGTGCAGGAAATGGAGTGTTACATCTGATATGGGAGAATTCAAGACTGATTCTGGTAACTTATTGGTTTCATTTTTCCTAGGTGGATCCTTGGTTTTGAAGGTACAAGTAGACCATTCGCTTAGAAATCCATTGCAGGCATAGCGTTTCCCATCAAATACCAGGTTGCCACTACAGACTGGGCAACCTTCTAGTGCACCATAGAACAGCAAGTCTTGACTGCCAATGTGAGATCAGCTCAGCAAACGATACACGAAAAGAATGATTCACTGATATAAATAAAAGCCTATGCTGCAGTTGTTGATATTAATGGTAGTACCATTTAGAAGCAACCTCATAGTCAGGGCCAGTGGAGTCTTGCTCATTCATTTGCAGGATCTCTTTCATTTGATCAATGGAAATACTCTCTCTTGTAGCGTTACAGAACGATTCAAACTCGTCTGCAAGATCGGTTTCGGATTTGCAGTTCGGGCGCCCATTTTCGTCTTCAGACTTTACTTTCTTAGGTGATTGTTCATTTTCATGTGTCTTGCTCTCTGCCTTTTGTTTCCTTGTCATTATCTTTTCTTCTTCACCAGAACCATGAGCGTGAGAATGGGATCTCTTTTCATGAACCTTCAAAATTTGTACACAAATTAGCTAATTTTCTTGAACTGTTCTGACATTTCTTTTATGAACTTTCAATTGTGTTCTTTCTCTACTTGCAGAAACACCATTTTTGCATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGGTACCAATGTTAGTTGTTATTTTGATTTGAACTTCTACTAGTTCTTAGTTAGATGATTAAGCTGGAAAACACAAGACAGACGCATAAACATCAGAAGAACACTGATTTGGTTAAATGAGTAGCAAACCCATGAAACATTAATGCTAGAGATTCATAGAAAGGAATGAAAGCGCATCCGAGTATATAATATAGAAGCTAAGAGGATCAAACCTTCATCTTTCAGTTTTTCTCTCTGTTTTGGATGAACACAGATGAGAGAGCAGCAAAAATAAAGCACTCCCCAACAAAGAAGGCAGTGAAAGGCAAAGCAATGAGATCCAAGCTTGAAGCTTGAAGCACTAACGTTTAAGATATGGAAAATAGCTGAAAGAGAGACCATTCCATGGATTTCCTTTAACGTTGCATAACTTTGTGATAGTGACAACTTCCGAGAGAGACACGTCCGTGCTTGTTCTTGACTTCTCTGTCAAACTAGTAGACTTCCATGTGTTATGGGGCACCAAAGTGAATACCACGTGTCCAATTGGATGCCTTTTGAAAGCCTCAGCTATTGACAGGTAGTGGAATGTAAACTGAGTTTTGTTTCTTTGTCCCTTCTGTAATATTCCTGCAAATTAATTTAGGATTGTAACGCCCAAGCCTACCGCTAGCAGATATTGTCCCCTTTCAAGTTTCCCTTTCGAACTTTCCCTCAACGTTTTAAAACGTTGTTAGGAGGCCACACCCTTATAAAAAACGCTTTGTTTTCCTCCCCAACTAAAGTGGGATCTCACATTCCACCCCTTTCAGGACCGATCCTAACACTCGTTCTCTTCTCCAATCGATGTAAGACTCCTATTCTACTCCCTTTCGGGACTCGTGTCCACCCCTCTTCAAGGCTCAACCTCCTTCCTAATAGACGCGTTTTAAAAGCTTTGATGAGAAACTCGAAAGAAAAAACTTACAAAGGACAATATCTATTAGCGGTGGGCTTGAGTGTGTGGCCGAACATACTTAACATCACAATGACAACAATCACAAGTAGAACCTCCAACATTTTTCAATGTTGAATCAAATGTGTATCTACCTTTCATATGTAATGAAATCACTAGTGTTTCAGACACAACCATTACCTATAATATAATATATGGTGTTTCAGACAAAACCGTTCCTTGCTGTAAAATAGTGTCTCGGCCAAACCCATTACTTGCTGTAAAATTTTCAACATTTACACATAAAACTTTCCTCAATGTCGATAAAACAGATACTCTTCCCCCTCTTCACCAATCCATGCTTGCTGCCCTCCTGATTGTCATCAACCTCTCTGTTGGCTTCTGCCTCTTTTCCAGCTCCTTCCTCTGCATCATCTGCAACACAACACAATAATCTCATACCTAAAAGCTTCATAAAACCGACTCGAAAAATCTCGAAAAAAATCGAGTCGAATTGCTTGCCTCTTTCTGTCTATCCATTTCAGATTCAATCTGCATATTTGATGTTATTAAGATCAGGAAATGAAAGTCAAGAGAATGAATGTAATAACGCATGTTGAATGTTGCTAGAAAAAGAAAACTTCACCAGTGTTTGCTTTAGTTTTTCATTCTCTTCTTTCAGCTGATTCAGTTCTGCTTCCAACTCCACTGTGTATGCCTGTAATCAACGATCATGACTCTAGTTAGTTCAGTATATATTAACAATCTCTTACAGTTTGCTCTATGTATCAGTGAATCATGATGATTAGACAAGCATGAGAACCTGTTTTCTAGCCCGAGATCGAGCAGCTGACTCCCGATTCTTGATCATCCTATGCTGCCTCCGCTGCACCACAAATTCTGGGGACCTATTAATGATCCTCTTCTTGCTGCTATGCTCACCCCAATCAGTCATGCTTTGAGATATCTGAATTGAGCTGTTATCAGATGGCTCCACACCAACTGATGGGGTAAGCATTTGGTTAGTTGAAAACAAATTCCCAGGAAAGTTCATAGCAGCATTCTGATGATTATGATAAGACATGTTCTGCCCCAAATTTCCCCCCATCCCTAACCCCAAATCCACCATCGAGCATGGCAGCTGCTTCATTGAAGAAGATGATGATTCTTGAACCATTCCAGCTTTCACCAAGAAATCCTCCAATGTCCGTTCTCCTAAACCCTGCTGGCTGTAGCATGGATTCTGCTGAACGTTCATGAACTTCTGCCATTGTGGGTATGTTTGTTCTGCTGCAGCTTGGCGAGACAGGGTTAGCCTTGAATTATTAATAGTATTGGCAGCCATGAAAGGGAGATTTTGAGGTTCATTTAATTCATTGGTTTGTGACTGAATTTGGTTTTGAGTTCCTTCAACATTCCAGAGATTGGAAAGTATCTCATCCATGCCTAAACACCCAAAATTCTTCCCACTTTTGTACTGAATTTCATCAACTGGTTGAGATAAAATGGAGTTGTTTTTGTTCAGTGAAGAGATGAAATTGTCACTTAATACTCCATTTGATGGCGGCTGTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTTCTGGTATCATTTGCCCAATCGCCTTATGTTCAAATCCTGAATTCTCCATTTCTCCAACA

mRNA sequence

AACAGATGCAAGTTCTTATCAGGTACTTTGATCAGTTGAGTAATACAATACCTACAACAATAGCTCGTGAATTAGAATCAGCTGGGAAAAAAATTAATGAACAAGAACTTTCTCGGGAGAAGTTCGGTATGCTACTCATTAAGTCCTCGGCCTTGATCGCAAAGCGAAAAGGCGCAATTGTACAAGATCCCATCCTTTTCAAATATCTCTCCACCTTGTTCTTCTGCGAGGGATTCAAGTGCCTCTTCAAATGGATCTTGTTTGTCCCAAGGGATCCCTTTGCCTTCGACAGTGAGATCTGTTACAATATCATAAGCTTCCAGTGGTTGAGCTTCTTGCTTCTCAATGCTATCAAGCAGCCAAGCTTCTCGAACGACCCGTATTCCTCTTTCACTGGAAAAGAGAACATTATTGGCATGAAATTTGAAAACCAAACAGCCCTGAAAACTGCATGTATCTTGGATAGAAGGAAAGAAACGCACACTGCTTCTGCAACTTTGGAAGATCCACCACGTTCTCTCTCGGCAGGAGAGACAACCAAACAACTGACACCTGCAAAGATTTGTTCATTAAAACCGCGACCGATTACAGCGAGGAACAGAATCAAGGACTCGATGAGAACAAAGAGATTTAATGCTGAGTTAACAGTCATTGAAAACTTGTTAGCCATCACAATAAAAACTCGTGCCATGCTAGTTCAATCCCAACCCATCGACTTACATGAGTTCTCGAAAGACGACCAGAGAGTGAAATGGTCATTCCTGAGAAGGAACGATTCAAACTCGTCTGCAAGATCGGTTTCGGATTTGCAGTTCGGGCGCCCATTTTCGTCTTCAGACTTTACTTTCTTAGAAACACCATTTTTGCATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGTGACAACTTCCGAGAGAGACACGTCCGTGCTTGTTCTTGACTTCTCTGTCAAACTAGTAGACTTCCATGTGTTATGGGGCACCAAAGTGAATACCACGTGTCCAATTGGATGCCTTTTGAAAGCCTCAGCTATTGACAGTGAAGAGATGAAATTGTCACTTAATACTCCATTTGATGGCGGCTGTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTTCTGGTATCATTTGCCCAATCGCCTTATGTTCAAATCCTGAATTCTCCATTTCTCCAACA

Coding sequence (CDS)

ATGCAAGTTCTTATCAGGTACTTTGATCAGTTGAGTAATACAATACCTACAACAATAGCTCGTGAATTAGAATCAGCTGGGAAAAAAATTAATGAACAAGAACTTTCTCGGGAGAAGTTCGGTATGCTACTCATTAAGTCCTCGGCCTTGATCGCAAAGCGAAAAGGCGCAATTGTACAAGATCCCATCCTTTTCAAATATCTCTCCACCTTGTTCTTCTGCGAGGGATTCAAGTGCCTCTTCAAATGGATCTTGTTTGTCCCAAGGGATCCCTTTGCCTTCGACAGTGAGATCTGTTACAATATCATAAGCTTCCAGTGGTTGAGCTTCTTGCTTCTCAATGCTATCAAGCAGCCAAGCTTCTCGAACGACCCGTATTCCTCTTTCACTGGAAAAGAGAACATTATTGGCATGAAATTTGAAAACCAAACAGCCCTGAAAACTGCATGTATCTTGGATAGAAGGAAAGAAACGCACACTGCTTCTGCAACTTTGGAAGATCCACCACGTTCTCTCTCGGCAGGAGAGACAACCAAACAACTGACACCTGCAAAGATTTGTTCATTAAAACCGCGACCGATTACAGCGAGGAACAGAATCAAGGACTCGATGAGAACAAAGAGATTTAATGCTGAGTTAACAGTCATTGAAAACTTGTTAGCCATCACAATAAAAACTCGTGCCATGCTAGTTCAATCCCAACCCATCGACTTACATGAGTTCTCGAAAGACGACCAGAGAGTGAAATGGTCATTCCTGAGAAGGAACGATTCAAACTCGTCTGCAAGATCGGTTTCGGATTTGCAGTTCGGGCGCCCATTTTCGTCTTCAGACTTTACTTTCTTAGAAACACCATTTTTGCATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGTGACAACTTCCGAGAGAGACACGTCCGTGCTTGTTCTTGACTTCTCTGTCAAACTAGTAGACTTCCATGTGTTATGGGGCACCAAAGTGAATACCACGTGTCCAATTGGATGCCTTTTGAAAGCCTCAGCTATTGACAGTGAAGAGATGAAATTGTCACTTAATACTCCATTTGATGGCGGCTGTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTTCTGGTATCATTTGCCCAATCGCCTTATGTTCAAATCCTGAATTCTCCATTTCTCCAACA

Protein sequence

MQVLIRYFDQLSNTIPTTIARELESAGKKINEQELSREKFGMLLIKSSALIAKRKGAIVQDPILFKYLSTLFFCEGFKCLFKWILFVPRDPFAFDSEICYNIISFQWLSFLLLNAIKQPSFSNDPYSSFTGKENIIGMKFENQTALKTACILDRRKETHTASATLEDPPRSLSAGETTKQLTPAKICSLKPRPITARNRIKDSMRTKRFNAELTVIENLLAITIKTRAMLVQSQPIDLHEFSKDDQRVKWSFLRRNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLHQVDFSKDLADSLMEFTVTTSERDTSVLVLDFSVKLVDFHVLWGTKVNTTCPIGCLLKASAIDSEEMKLSLNTPFDGGCAAATAAAAAAAAAAGSGIICPIALCSNPEFSISPT
Homology
[Close]
BLAST of Cp4.1LG05g04020 vs. NCBI nr
Match: KAG7035938.1 (hypothetical protein SDJN02_02738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.52e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 255 RNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLHQVDFSKDLADSLMEFT 304
           +NDSNSSARSVSDLQFGRPFSSSDFTFLETPFL+QVDFSKDLADSLMEFT
Sbjct: 10  QNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFT 59

[Close]
BLAST of Cp4.1LG05g04020 vs. NCBI nr
Match: KAG6605988.1 (hypothetical protein SDJN03_03305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.70e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 255 RNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLHQVDFSKDLADSLMEFT 304
           +NDSNSSARSVSDLQFGRPFSSSDFTFLETPFL+QVDFSKDLADSLMEFT
Sbjct: 10  QNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFT 59

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g04020 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g04020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035938.11.52e-2096.00hypothetical protein SDJN02_02738, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6605988.11.70e-2096.00hypothetical protein SDJN03_03305, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG05g04020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g04020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04020.1Cp4.1LG05g04020.1mRNA