Cp4.1LG05g03990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g03990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal protein
Location	Cp4.1LG05: 2331814 .. 2335953 (+)
RNA-Seq Expression	Cp4.1LG05g03990
Synteny	Cp4.1LG05g03990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCCGGAGAAATGGTGGAAAGAGGAGCCGCTAAAGGACTGGATTGACTACTCGGCGTTCGATAGAATCTTGACTGCCGTCAGAATTGCGTCGGCGAGGGCGTCGCTTGCGGTAGAGCAGCCCCCGATCCAGTTCACGGCCACCGTTGAGGGTAGAAAGTAGGTGTTGAGATGGAAATATGTATTGAAATTACTTTATAGATAAACAAATCCCGTTCATCAAGCTTCGTCTCGTGAGTGATTTATTTACTTCGTTAAAGGTTGCAATTTATCAGTGTACTCGGGTTGAATTAATTTTTTTTTTTTTTTTTTACAGGGATTGAGTTAGTTCAAGTTACAAATTATATTAATAATAAAATTTTATAAAGTTCAAATATCAAACATTTACCGGCTACCGCTACAGTGGATCACTGACATACATTATAAAAATTTCTTAATTATCGTAATAATCTTAGAAGCAAAGTAAGGTCGGGTTCTGTTTCGAACCATATTTTCGAATGATCAGGTTGACCTGATTAAAAAATCTTCGGTTCATAATTGAACCGAGTACAGGTTAATTATGAATTTATACGAAAAAATTACATTTAATAATATAGTTTTTGTGCTATATTACGAAATTTTTGTGAGAAAACATCATTATTTGATAATTATTTATGCCACGTGTTAATTACGTATTATATGAGAATCTATTTAAGTTTANGAATTACATTTAATAATATAGTTTTTGTGCTATATTACGAAATTTTGTGAGAAAACATCATTATTTGATAATTATTTATGCCACGTGTTAATTACGTATTATATGAGAATCTATTTAAGTTTAATTGCTTATTACAAAATTTTGAAAGTACAATAACTAAATAAAATACATATTGTAGAAAAACGAGCCCATCGAGGCCCATGTTCAAGGCCCATTGGACAACAAATTGGGCCAATATTGGGCCCAATATGAACATGGTCGTACAGCCCGGCCCATGGCCGTGGTTCGCAAAATTACGGTCCTCCTATCATAGGTTTATCACCGCGCCTTCTTTTTGGATCGCATCTCTTCGGTCTTCCATTATATATCTANCGTGTTAATTACGTATTATATGAGAATCTATTTAAGTTTAATTGCTTATTACAAAATTTTGAAAGTACAATAACTAAATAAAATACATATTGTAGAAAAACGAGCCCATCGAGGCCCATGTTCAAGGCCCATTGGACAACAAATTGGGCCAATATTGGGCCCAATATGAACATGGTCGTACAGCCCGGCCCATGGCCGTGGTTCGCAAAATTACGGTCCTCCTATCATAGGTTTATCACCGCGCCTTTCTTTTTGGATCGCATCTCTTCGGTCTTCCATTATATATCTATTATCAGCTGCCGTCGAAAAACCCTAGCTTAGCTTCTTCTCACCAGGTACGAATCTACACTCTTTCGAACTGAGATTTATTTTTGTTGAGACTGCTACTTAATTCTATTGCGCTGCGGCATTTTTTTTTCGTCTTGTTTGTTCTTCCTTGATTTGATATTCAGTTCTTGTTCATCTCTATCTTGTATTTTTTACTCGTGTGGTTGTTCGTTTACTTCGTGTTTTGATTAGGTTTGTTCCTTTTTTCTTCTTTTCAGTGAGTCTGTAGCTGCTCCTTGAGAAGAAAGGGTTCCGAAAATGAGGTATGTCGAACTGTTTTTCCTTGTAGTTTATTTACTGTTCAGAATCTTGTTTTAGAACACGATTTTGATTAGTGCTTCTGCTGCTGTTTATGTTAAATATGCCGTGGCTATAAATTTAGTTCGCGTTCTTTTCTCCTGGAAGATTTGGAAGTATGAAGTTGCATCGTAGGAATTTATATGCCGTGGCTATAAATTTAGTTCGCGTTTTTTTCTCCTGGAAGATTTGGAAGTATGAAGTTGCATCGTAGGAATTTATATGCTGTGGCTATAAATTTAGTTCGCATTCTTTTCTCCTGGAAGATTTGGAAGTTTGAAGTTGCATCGTAGGAATTTATATGCTGTGGCTATAAATTTAGTTCGCATTCTTTTCTCCTGGAAGATTTGGAAGTTTGAAGTTGCATCGTAGGAATTTATATGCTGTGGCTATAAATTTAGTTCGCATTCTTTTCTCCTGGAAGATTTGGAAGTTTGAAGTTGCATCGTAGGAATTTATATGCTGTGGCTATAAATTTAGTTCGCATTCTTTTCTCCTGGAAGATTTGGAAGTTTGAAGTTGCATCGTAGGAATTTATATGCTGTGGCTATAAATTTAGTTCGCATTATTTTCTCCTGGAAGATTTGGAAGTATGAAGGTGCATCGTAGGAATTTACTTGGGCTATATTTTGAAGTGTTCATGATTCTACCAATTCTGGAGTTTACAATACTTGTTCATACGTTTATACTAAATTGAAATTTTGTTTGTTGGAGGCTTTGGTTCGTATCATTTGCGTTACGTGTGTCTTTGAATTTACTGAATGTAGTTTTTCTGGTTTATATCTGCAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGCCATTTCATCTATCTTTGGTGATAGCACTGAAAAGAAGCGCAACTTTACTGAGACTATTGAACTTCAGATTGGACTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGCTTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGTAGGCTTTATATGCTCGTAACCTTTCCACTTGTCTTGTCCGGTTACTATTTTGTGTGAGGCTTGCTGTATTTTATGTCACAATTCTACTAGCTACCGTGTTTAAGAATATATATGAAGTTTTCAAAGGCAATTAGATCTGGACAATAAGTTTATAGTTGTTTTCATCTGTGGTTTATAGGCATGATTCTGAATTCTGTATGAGCATTATTAGTGACTTTGTACTTGTTGTGGAAAACAATATACTTCGGCATTTCATGCATAGTAAATAGAAATTTCTAAACCGTTGCACGTCAGCACTATCCGTTTACTAAAATGTGCGGATGCTTATTTTAGGCAGAGAAGATTGGTATGGATTATATGGATGTGGAAGGTTTGAAGAAGCTAAACAAGAACAAGAAGTTGGTGAAGAAACTTGCCAAGAAATATCATGCCTTTTTGGCATCTGAAGCTGTTATCAAGCAAATTCCCCGTCTTCTGGGCCCTGGGCTCAACAAGGCAGGCAAGTATTCTGAACTACTAGACATCCGGAATTTACCCTTTTGATCTTGTGGCTCAAGTTAGTAAGTTCTTGTTAGTTTTATCGTCGTGGTGATGCAAGCTAGTGGCATCTGAAAGGCTCTCGATAGACTGCATGCTTGTAAATTGAATTCATTCTTTTCTTTCGAAAATGCTGTTTTGTTTTGCACAGCTCACATAAGGAAGTCATATTTTTGTAGTTCTTACTAACATCGACATGTACATTGTCGTTACAGGTAAGTTCCCTACCCTGGTTACTCACCAAGAATCCCTCGAGTCGAAAGTCAACGAGACAAAGGCAATGGTTAAATTTCAGCTAAAAAAGGTTCTTTGCATGGGTGTTGCCGTCGGTAACGTCGCCATGGAGGAGAAGCAAGTTTTCCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCCTTGTTGAAAAAGAATTGGCAAAACGTAAGTCACTGGCATACTTTCCCCCCCCCATGTAATTTTAGTTCTTTGATTATAATCACACCTTCGTATTTTGATTAAAGAACATACTAACACAGTTTTCAAATGCTCTCTACACATAATCAATCCTTGTCCTTGTATCGACTTATGAGATTGGATGTTTCTTCTTGTTCATCAGGTGAGGTGCTTGTACCTGAAGAGTACTATGGGAAAGGCATATCGAGTCTTCTGAGAACTTTTCAAATTTTAGATAGTACTGTTTGCTCTTTCGTTTAAGAACCAACCAGGTTGAGGTGAAATTCTATATTATGATTGGTAAAAGTTTTCCTGTTTATTTTTCTTTTATTTATTTTTTGTTTAGCACAAACAAAACCACTAGCTGCACAACCGTTAACACTCATGATGGAAGTAATGTTTTCTTTTTTTTCCATTTGTTCTCTTATGTTTTGTCGATTTTTTTTCCAATTTATTATACG

mRNA sequence

ATGGTGCCGGAGAAATGGTGGAAAGAGGAGCCGCTAAAGGACTGGATTGACTACTCGGCGTTCGATAGAATCTTGACTGCCGTCAGAATTGCGTCGGCGAGGGCGTCGCTTGCGGTAGAGCAGCCCCCGATCCAGTTCACGGCCACCGTTGAGGTTCTTGTTCATCTCTATCTTGTATTTTTTACTCGTGTGGTTGTTCGTTTACTTCGTGTTTTGATTAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGCCATTTCATCTATCTTTGGTGATAGCACTGAAAAGAAGCGCAACTTTACTGAGACTATTGAACTTCAGATTGGACTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGCTTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTATGGATTATATGGATGTGGAAGGTTTGAAGAAGCTAAACAAGAACAAGAAGTTGGTGAAGAAACTTGCCAAGAAATATCATGCCTTTTTGGCATCTGAAGCTGTTATCAAGCAAATTCCCCGTAAGTTCCCTACCCTGGTTACTCACCAAGAATCCCTCGAGTCGAAAGTCAACGAGACAAAGGCAATGGTTAAATTTCAGCTAAAAAAGGTTCTTTGCATGGGTGTTGCCGTCGGTAACGTCGCCATGGAGGAGAAGCAAGTTTTCCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCCTTGTTGAAAAAGAATTGGCAAAACGTGAGGTGCTTGTACCTGAAGAGTACTATGGGAAAGGCATATCGAGTCTTCTGAGAACTTTTCAAATTTTAGATAGTACTGTTTGCTCTTTCGTTTAAGAACCAACCAGGTTGAGGTGAAATTCTATATTATGATTGGTAAAAGTTTTCCTGTTTATTTTTCTTTTATTTATTTTTTGTTTAGCACAAACAAAACCACTAGCTGCACAACCGTTAACACTCATGATGGAAGTAATGTTTTCTTTTTTTTCCATTTGTTCTCTTATGTTTTGTCGATTTTTTTTCCAATTTATTATACG

Coding sequence (CDS)

ATGGTGCCGGAGAAATGGTGGAAAGAGGAGCCGCTAAAGGACTGGATTGACTACTCGGCGTTCGATAGAATCTTGACTGCCGTCAGAATTGCGTCGGCGAGGGCGTCGCTTGCGGTAGAGCAGCCCCCGATCCAGTTCACGGCCACCGTTGAGGTTCTTGTTCATCTCTATCTTGTATTTTTTACTCGTGTGGTTGTTCGTTTACTTCGTGTTTTGATTAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGCCATTTCATCTATCTTTGGTGATAGCACTGAAAAGAAGCGCAACTTTACTGAGACTATTGAACTTCAGATTGGACTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGCTTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTATGGATTATATGGATGTGGAAGGTTTGAAGAAGCTAAACAAGAACAAGAAGTTGGTGAAGAAACTTGCCAAGAAATATCATGCCTTTTTGGCATCTGAAGCTGTTATCAAGCAAATTCCCCGTAAGTTCCCTACCCTGGTTACTCACCAAGAATCCCTCGAGTCGAAAGTCAACGAGACAAAGGCAATGGTTAAATTTCAGCTAAAAAAGGTTCTTTGCATGGGTGTTGCCGTCGGTAACGTCGCCATGGAGGAGAAGCAAGTTTTCCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCCTTGTTGAAAAAGAATTGGCAAAACGTGAGGTGCTTGTACCTGAAGAGTACTATGGGAAAGGCATATCGAGTCTTCTGA

Protein sequence

MVPEKWWKEEPLKDWIDYSAFDRILTAVRIASARASLAVEQPPIQFTATVEVLVHLYLVFFTRVVVRLLRVLISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF

Homology

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BLAST of Cp4.1LG05g03990 vs. ExPASy Swiss-Prot
Match: B8B9K6 (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.3e-95
Identity = 180/216 (83.33%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 132
           +SKLQSE L+EAIS + G+S EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 133 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 192
           KMK+CMLGDA HVEEAEKIG+DYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 193 R----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 252
           R          KFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 253 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           N+QMSVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct: 181 NIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy Swiss-Prot
Match: B7F845 (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.3e-95
Identity = 180/216 (83.33%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 132
           +SKLQSE L+EAIS + G+S EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 133 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 192
           KMK+CMLGDA HVEEAEKIG+DYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 193 R----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 252
           R          KFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 253 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           N+QMSVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct: 181 NIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy Swiss-Prot
Match: Q8VZB9 (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.6e-94
Identity = 180/216 (83.33%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 132
           +SKLQSEA+REAI++I G S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 133 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 192
           KMK+CMLGDA HVEEAEK+G++ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 193 R----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 252
           R          KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 253 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy Swiss-Prot
Match: P59230 (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.7e-93
Identity = 178/216 (82.41%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 132
           +SKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 133 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 192
           KMK+CMLGDA HVEEAEK+G+  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 193 R----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 252
           R          KFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 253 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy Swiss-Prot
Match: P59231 (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.3e-92
Identity = 181/217 (83.41%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTE-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 132
           +SKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 133 PKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 192
           PKMK+CMLGDA HVEEAEKIG++ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 193 PR----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 252
           PR          KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 253 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

[Close]

BLAST of Cp4.1LG05g03990 vs. NCBI nr
Match: KAG7035940.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 424 bits (1091), Expect = 5.22e-146
Identity = 246/345 (71.30%), Postives = 254/345 (73.62%), Query Frame = 0


Query: 1   MVPEKWWKEEPLKDWIDYSAFDRILTAVRIASARASLAVE-------------------- 60
           MVPEKW KEE LKDWIDYS FDRILTA RIASARASL  E                    
Sbjct: 41  MVPEKWGKEELLKDWIDYSTFDRILTADRIASARASLVAEGRRSSPRSSSRSPLRVESLS 100

Query: 61  -----------------------QPPIQFTATVEVLVHLYLVFFTR--VVVRLLRVLIS- 120
                                   P +  +    +L+      + +  V + L+RVL S 
Sbjct: 101 PRLLFGSHLFGRPLYIYCQLPSKNPSLASSHQNTILISASAAVYVKYAVAINLVRVLFSW 160

Query: 121 ---------KLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVK 180
                    KLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVK
Sbjct: 161 KIWKYGVASKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVK 220

Query: 181 LPHIPRPKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASE 240
           LPHIPRPKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASE
Sbjct: 221 LPHIPRPKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASE 280

Query: 241 AVIKQIPR------------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNV 278
           AVIKQIPR            KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNV
Sbjct: 281 AVIKQIPRLLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNV 340

[Close]

BLAST of Cp4.1LG05g03990 vs. NCBI nr
Match: KAG6570486.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 424 bits (1090), Expect = 7.03e-135
Identity = 235/286 (82.17%), Postives = 243/286 (84.97%), Query Frame = 0


Query: 2   VPEKWWKEEPLKDWIDYSAFDRILTAVRIASARASLAVEQPPIQFTATVEVLVHLYLVFF 61
           VPEKW KEE LKDWIDYSAFDRIL A RIASARASL  E                     
Sbjct: 63  VPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEG-------------------- 122

Query: 62  TRVVVRLLRV-LISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRF 121
            R+++R  +   +SKLQSEALREAISSIFGDS+EKKRNFTETIELQIGLKNYDPQKDKRF
Sbjct: 123 RRLLLREDKAPKMSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRF 182

Query: 122 SGSVKLPHIPRPKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHA 181
           SGSVKLPHIPRPKMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHA
Sbjct: 183 SGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHA 242

Query: 182 FLASEAVIKQIPR----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 241
           FLASEAVIKQIPR          KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV
Sbjct: 243 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 302

Query: 242 GNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYR 276
           GNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYR
Sbjct: 303 GNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYR 328

[Close]

BLAST of Cp4.1LG05g03990 vs. NCBI nr
Match: XP_022958674.1 (60S ribosomal protein L10a-like [Cucurbita moschata] >XP_022995143.1 60S ribosomal protein L10a-like [Cucurbita maxima] >XP_023532799.1 60S ribosomal protein L10a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387 bits (995), Expect = 5.48e-134
Identity = 205/215 (95.35%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. NCBI nr
Match: XP_022943718.1 (60S ribosomal protein L10a [Cucurbita moschata] >XP_022943719.1 60S ribosomal protein L10a [Cucurbita moschata] >XP_022985885.1 60S ribosomal protein L10a [Cucurbita maxima] >XP_022985886.1 60S ribosomal protein L10a [Cucurbita maxima] >XP_023513214.1 60S ribosomal protein L10a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384 bits (986), Expect = 1.29e-132
Identity = 202/215 (93.95%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIFGDS+EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. NCBI nr
Match: XP_022945884.1 (60S ribosomal protein L10a [Cucurbita moschata] >XP_023541044.1 60S ribosomal protein L10a [Cucurbita pepo subsp. pepo] >KAG6573621.1 60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012702.1 60S ribosomal protein L10a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380 bits (976), Expect = 4.29e-131
Identity = 201/215 (93.49%), Postives = 203/215 (94.42%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIF DS EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFTDSNEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MKLCMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy TrEMBL
Match: A0A6J1K725 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111490772 PE=3 SV=1)

HSP 1 Score: 387 bits (995), Expect = 2.65e-134
Identity = 205/215 (95.35%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy TrEMBL
Match: A0A6J1H5S7 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111459828 PE=3 SV=1)

HSP 1 Score: 387 bits (995), Expect = 2.65e-134
Identity = 205/215 (95.35%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy TrEMBL
Match: A0A6J1JCI3 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1)

HSP 1 Score: 384 bits (986), Expect = 6.23e-133
Identity = 202/215 (93.95%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIFGDS+EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy TrEMBL
Match: A0A6J1FXB0 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111448383 PE=3 SV=1)

HSP 1 Score: 384 bits (986), Expect = 6.23e-133
Identity = 202/215 (93.95%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIFGDS+EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. ExPASy TrEMBL
Match: A0A6J1G271 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111449992 PE=3 SV=1)

HSP 1 Score: 380 bits (976), Expect = 2.08e-131
Identity = 201/215 (93.49%), Postives = 203/215 (94.42%), Query Frame = 0


Query: 74  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 133
           SKLQSEALREAISSIF DS EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEALREAISSIFTDSNEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 134 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 193
           MKLCMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 194 ----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 253
                     KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQN 181

Query: 254 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 278
           VQMSVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. TAIR 10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 345.5 bits (885), Expect = 3.9e-95
Identity = 180/216 (83.33%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 132
           +SKLQSEA+REAI++I G S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 133 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 192
           KMK+CMLGDA HVEEAEK+G++ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 193 R----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 252
           R          KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 253 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. TAIR 10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 342.4 bits (877), Expect = 3.3e-94
Identity = 178/216 (82.41%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 132
           +SKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 133 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 192
           KMK+CMLGDA HVEEAEK+G+  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 193 R----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 252
           R          KFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 253 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. TAIR 10
Match: AT2G27530.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 342.4 bits (877), Expect = 3.3e-94
Identity = 178/216 (82.41%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 132
           +SKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 133 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 192
           KMK+CMLGDA HVEEAEK+G+  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 193 R----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 252
           R          KFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 253 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG05g03990 vs. TAIR 10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 340.1 bits (871), Expect = 1.7e-93
Identity = 181/217 (83.41%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTE-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 132
           +SKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 133 PKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 192
           PKMK+CMLGDA HVEEAEKIG++ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 193 PR----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 252
           PR          KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 253 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

[Close]

BLAST of Cp4.1LG05g03990 vs. TAIR 10
Match: AT5G22440.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 340.1 bits (871), Expect = 1.7e-93
Identity = 181/217 (83.41%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 73  ISKLQSEALREAISSIFGDSTE-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 132
           +SKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 133 PKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 192
           PKMK+CMLGDA HVEEAEKIG++ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 193 PR----------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 252
           PR          KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 253 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 279
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g03990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8B9K6	2.3e-95	83.33	60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3...	[more]
B7F845	2.3e-95	83.33	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE...	[more]
Q8VZB9	5.6e-94	83.33	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=...	[more]
P59230	4.7e-93	82.41	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=...	[more]
P59231	2.3e-92	83.41	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=...	[more]

BLAST of Cp4.1LG05g03990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035940.1	5.22e-146	71.30	60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6570486.1	7.03e-135	82.17	Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022958674.1	5.48e-134	95.35	60S ribosomal protein L10a-like [Cucurbita moschata] >XP_022995143.1 60S ribosom...	[more]
XP_022943718.1	1.29e-132	93.95	60S ribosomal protein L10a [Cucurbita moschata] >XP_022943719.1 60S ribosomal pr...	[more]
XP_022945884.1	4.29e-131	93.49	60S ribosomal protein L10a [Cucurbita moschata] >XP_023541044.1 60S ribosomal pr...	[more]

BLAST of Cp4.1LG05g03990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K725	2.65e-134	95.35	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111490772 PE=3 SV=1	[more]
A0A6J1H5S7	2.65e-134	95.35	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111459828 PE=3 SV=1	[more]
A0A6J1JCI3	6.23e-133	93.95	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1	[more]
A0A6J1FXB0	6.23e-133	93.95	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111448383 PE=3 SV=1	[more]
A0A6J1G271	2.08e-131	93.49	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111449992 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g03990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08360.1	3.9e-95	83.33	Ribosomal protein L1p/L10e family	[more]
AT2G27530.1	3.3e-94	82.41	Ribosomal protein L1p/L10e family	[more]
AT2G27530.2	3.3e-94	82.41	Ribosomal protein L1p/L10e family	[more]
AT5G22440.1	1.7e-93	83.41	Ribosomal protein L1p/L10e family	[more]
AT5G22440.2	1.7e-93	83.41	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 95..272 e-value: 5.5E-34 score: 117.7
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 81..277 e-value: 6.65038E-53 score: 169.672
None	No IPR available	GENE3D	3.30.190.20		coord: 188..276 e-value: 1.3E-20 score: 75.7 coord: 73..187 e-value: 4.8E-35 score: 122.2
None	No IPR available	PANTHER	PTHR23105:SF164	60S RIBOSOMAL PROTEIN L10A-3	coord: 74..276
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 74..276
IPR002143	Ribosomal protein L1	PIRSF	PIRSF002155	RPL1p_RPL1a_RPL10e_RPL1o	coord: 67..278 e-value: 2.9E-38 score: 129.4 coord: 21..59 e-value: 90.0 score: 0.1
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 94..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g03990.1	Cp4.1LG05g03990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome