Cp4.1LG05g03510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g03510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 1774091 .. 1774297 (+)
RNA-Seq ExpressionCp4.1LG05g03510
SyntenyCp4.1LG05g03510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

mRNA sequence

ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

Coding sequence (CDS)

ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

Protein sequence

MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFRLGHTGSDNVVYTCFSA
Homology
BLAST of Cp4.1LG05g03510 vs. NCBI nr
Match: KAG6606110.1 (hypothetical protein SDJN03_03427, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 2.92e-25
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFR 52
          MDVFIPEDYV RRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFR
Sbjct: 1  MDVFIPEDYVNRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFR 52

BLAST of Cp4.1LG05g03510 vs. NCBI nr
Match: KAE8647863.1 (hypothetical protein Csa_000530 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.61e-10
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 1   MDVFIPEDYVTRRRIEKQAAA----KERRPEPIKGRALRPTSEKEKSVDAGKTG-FRLGH 60
           MDVFIP+DYV RRRIEK+ AA    K R P P   R     S+KEK   A KTG FR   
Sbjct: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPR--NSDKEKEAPA-KTGLFRFTA 130

Query: 61  TGSDNVVYTCFSA 68
           TG+DNVV+ CFSA
Sbjct: 131 TGADNVVFNCFSA 140

BLAST of Cp4.1LG05g03510 vs. NCBI nr
Match: ESR52799.1 (hypothetical protein CICLE_v10023197mg [Citrus clementina] >KDO76203.1 hypothetical protein CISIN_1g042803mg [Citrus sinensis])

HSP 1 Score: 44.3 bits (103), Expect = 8.91e-04
Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFR-------L 60
          MDVFIPE+YV RRR EK+AAA  R     KG      S K     +G   FR       L
Sbjct: 1  MDVFIPEEYVARRRTEKKAAAMAR-----KGSNTVSESGKRSMEKSGPPPFRRLDNNEFL 60

Query: 61 GHTG-SDNVVYTCFSA 68
             G S+NVV++CFSA
Sbjct: 61 VSGGLSENVVFSCFSA 71

BLAST of Cp4.1LG05g03510 vs. NCBI nr
Match: KAE8055295.1 (hypothetical protein FH972_012146 [Carpinus fangiana])

HSP 1 Score: 44.3 bits (103), Expect = 9.93e-04
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAAKERR-PEPIKGRALRPTSEKE-KSVDAGKTGFRLGH--- 60
          MDVFIPE+YV RRR E++AAA   +  E +   + R + EKE K        FRL +   
Sbjct: 1  MDVFIPEEYVMRRRSERKAAAGAGKVSEMVSAESGRRSVEKEEKKAAQSPPTFRLENEFL 60

Query: 61 --TG-SDNVVYTCFSA 68
            TG S+NVV++CFSA
Sbjct: 61 VSTGMSENVVFSCFSA 76

BLAST of Cp4.1LG05g03510 vs. ExPASy TrEMBL
Match: A0A0A0KKA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.35e-11
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAA----KERRPEPIKGRALRPTSEKEKSVDAGKTG-FRLGH 60
          MDVFIP+DYV RRRIEK+ AA    K R P P   R     S+KEK   A KTG FR   
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPR--NSDKEKEAPA-KTGLFRFTA 60

Query: 61 TGSDNVVYTCFSA 68
          TG+DNVV+ CFSA
Sbjct: 61 TGADNVVFNCFSA 70

BLAST of Cp4.1LG05g03510 vs. ExPASy TrEMBL
Match: A0A067G992 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042803mg PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.31e-04
Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFR-------L 60
          MDVFIPE+YV RRR EK+AAA  R     KG      S K     +G   FR       L
Sbjct: 1  MDVFIPEEYVARRRTEKKAAAMAR-----KGSNTVSESGKRSMEKSGPPPFRRLDNNEFL 60

Query: 61 GHTG-SDNVVYTCFSA 68
             G S+NVV++CFSA
Sbjct: 61 VSGGLSENVVFSCFSA 71

BLAST of Cp4.1LG05g03510 vs. ExPASy TrEMBL
Match: V4VJD7 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023197mg PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.31e-04
Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFR-------L 60
          MDVFIPE+YV RRR EK+AAA  R     KG      S K     +G   FR       L
Sbjct: 1  MDVFIPEEYVARRRTEKKAAAMAR-----KGSNTVSESGKRSMEKSGPPPFRRLDNNEFL 60

Query: 61 GHTG-SDNVVYTCFSA 68
             G S+NVV++CFSA
Sbjct: 61 VSGGLSENVVFSCFSA 71

BLAST of Cp4.1LG05g03510 vs. ExPASy TrEMBL
Match: A0A5N6R596 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012146 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.81e-04
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAAKERR-PEPIKGRALRPTSEKE-KSVDAGKTGFRLGH--- 60
          MDVFIPE+YV RRR E++AAA   +  E +   + R + EKE K        FRL +   
Sbjct: 1  MDVFIPEEYVMRRRSERKAAAGAGKVSEMVSAESGRRSVEKEEKKAAQSPPTFRLENEFL 60

Query: 61 --TG-SDNVVYTCFSA 68
            TG S+NVV++CFSA
Sbjct: 61 VSTGMSENVVFSCFSA 76

BLAST of Cp4.1LG05g03510 vs. ExPASy TrEMBL
Match: A0A2R6QK64 (Centrosome and spindle pole associated protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16784 PE=4 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 9.65e-04
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 1  MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKT-----GFRLGH 60
          MDVFIPE+YVTRRR+EK+ A K+R    +     R    +EK+              L +
Sbjct: 1  MDVFIPEEYVTRRRVEKREATKKRSEPRVSDSGSRRAEREEKNHQKPHNFQYHENEHLFY 60

Query: 61 TGS---DNVVYTCFSA 68
          T +   +N+VY+C SA
Sbjct: 61 TTTGLTENIVYSCLSA 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6606110.12.92e-2598.08hypothetical protein SDJN03_03427, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647863.14.61e-1057.53hypothetical protein Csa_000530 [Cucumis sativus][more]
ESR52799.18.91e-0446.05hypothetical protein CICLE_v10023197mg [Citrus clementina] >KDO76203.1 hypotheti... [more]
KAE8055295.19.93e-0446.05hypothetical protein FH972_012146 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
A0A0A0KKA74.35e-1157.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1[more]
A0A067G9924.31e-0446.05Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042803mg PE=4 SV=1[more]
V4VJD74.31e-0446.05Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023197mg PE=4 ... [more]
A0A5N6R5964.81e-0446.05Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012146 PE=4 SV=1[more]
A0A2R6QK649.65e-0438.16Centrosome and spindle pole associated protein OS=Actinidia chinensis var. chine... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g03510.1Cp4.1LG05g03510.1mRNA