Cp4.1LG05g03420 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g03420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Tubulin beta chain
Location	Cp4.1LG05: 1846847 .. 1848603 (-)
RNA-Seq Expression	Cp4.1LG05g03420
Synteny	Cp4.1LG05g03420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACATTCCCACATGAAATTATTAATTCAATCTTCTTCCATGTCTTTCAACCTTCACTTTCACTATCCTTTTACGCCATTTCCCCCTCAACATAAAGACTAGAAACTCCATTTCACTTCATCCTGAAAACCCCCTTATATATCCCTCCCTCCCTCCTTCCCTCTGCCTGCAAACCCTCAAACCATCTGCCATTTCCCTCTTGCTTTCCTCTGCTTTCAAAAATGAGAGAAATCCTCCATCTTCAAGCAGGACAGTGTGGAAACCAAATCGGGGCTAAGTTTTGGGAAGTTGTTTGTGATGAACATGGCATAGATCCCACTGGAAACTACACCGGAACTAGTAACCTTCAACTCGAAAGAGTTAATGTTTACTACAACGAAGCGAGCGGCGGCCGGTACGTTCCGAGGGCTGTTCTGGTTGATCTTGAACCAGGAACCATGGACAGCCTCAGAACAGGTCCTTATGGGAATATATTCAGGCCTGATAACTTTGTTTTTGGGCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACCGAAGGAGCTGAATTAGTTGATTCTGTTCTTGATGTGGTCAGAAAAGAAGCTGAGAATTGTGACTGTTTACAAGGTATGAATATGAGATGACTATGAGATCTGTTCTTCCCATATTCAATACATAAGATGTTATTTCTACTCTAATAAATATTGAGAGTAATCAAAATCCTGATCTTGGTTTGAATGTGGAACAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACCCTACTGATATCAAAGATCAGGGAAGAGTATCCTGACAGGATGATGTTAACTTTCTCTGTGTTCCCTTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTATAATGCCACTCTCTCTGTGCACCAGTTGGTGGAGAATGCTGATGAGTGCATGGTTTTGGATAATGAAGCACTCTATGATATCTGCTTTAGAACCCTCAAGCTCACCAATCCCAGTTGTAAGTTTCTCTCCCAGTATCACATGTTGTAGCAATCAATATACTTGAGATGCAATAGCTCTCTTATTCCGATTTTTGTGTGCTTTAGTTGGTGATCTCAACCACTTGATTTCCACAACCATGAGTGGAGTTACATGCTGCCTTCGCTTCCCCGGCCAGCTCAATTCCGACCTCCGAAAGCTCGCTGTGAACCTCATCCCTTTCCCACGACTCCACTTCTTCATGGTTGGTTTTGCACCCTTGACTGCTCGTGGCTCGCAGCAGTACCGTGCGCTCACCATCCCTGAGCTCACACAGCAAATGTGGGATGCCAAAAACATGATGTGTGCTGCTGATCCTCGCCATGGTCGATACCTAACTGCCTCGGCTTTGTTCCGTGGCAAGATGAGTACCAAGGAAGTCGACGAACAGATGATTAACGTACAGAACAAGAACTCATCCTACTTTGTTGAGTGGATTCCAAACAATGTTAAGTCAAGTGTTTGTGACATTCCACCAACTGGGTTGTCGATGTCTTCGACATTCATGGGAAACTCAACCTCAATACAAGAGATGTTTCGACGAGTCTCCGAGCAATTCACGGTCATGTTCAGGAGGAAGGCGTTTTTGCATTGGTACACAGGGGAGGGAATGGATGAGATGGAGTTTACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAGCAGTATCAAGATGCTGTAGCAGAGGATGAGGAGGAAGATGATATGCTGGAGCACGAA

mRNA sequence

CATACATTCCCACATGAAATTATTAATTCAATCTTCTTCCATGTCTTTCAACCTTCACTTTCACTATCCTTTTACGCCATTTCCCCCTCAACATAAAGACTAGAAACTCCATTTCACTTCATCCTGAAAACCCCCTTATATATCCCTCCCTCCCTCCTTCCCTCTGCCTGCAAACCCTCAAACCATCTGCCATTTCCCTCTTGCTTTCCTCTGCTTTCAAAAATGAGAGAAATCCTCCATCTTCAAGCAGGACAGTGTGGAAACCAAATCGGGGCTAAGTTTTGGGAAGTTGTTTGTGATGAACATGGCATAGATCCCACTGGAAACTACACCGGAACTAGTAACCTTCAACTCGAAAGAGTTAATGTTTACTACAACGAAGCGAGCGGCGGCCGGTACGTTCCGAGGGCTGTTCTGGTTGATCTTGAACCAGGAACCATGGACAGCCTCAGAACAGGTCCTTATGGGAATATATTCAGGCCTGATAACTTTGTTTTTGGGCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACCGAAGGAGCTGAATTAGTTGATTCTGTTCTTGATGTGGTCAGAAAAGAAGCTGAGAATTGTGACTGTTTACAAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACCCTACTGATATCAAAGATCAGGGAAGAGTATCCTGACAGGATGATGTTAACTTTCTCTGTGTTCCCTTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTATAATGCCACTCTCTCTGTGCACCAGTTGGTGGAGAATGCTGATGAGTGCATGGTTTTGGATAATGAAGCACTCTATGATATCTGCTTTAGAACCCTCAAGCTCACCAATCCCAAGATGTTTCGACGAGTCTCCGAGCAATTCACGGTCATGTTCAGGAGGAAGGCGTTTTTGCATTGGTACACAGGGGAGGGAATGGATGAGATGGAGTTTACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAGCAGTATCAAGATGCTGTAGCAGAGGATGAGGAGGAAGATGATATGCTGGAGCACGAA

Coding sequence (CDS)

ATGAGAGAAATCCTCCATCTTCAAGCAGGACAGTGTGGAAACCAAATCGGGGCTAAGTTTTGGGAAGTTGTTTGTGATGAACATGGCATAGATCCCACTGGAAACTACACCGGAACTAGTAACCTTCAACTCGAAAGAGTTAATGTTTACTACAACGAAGCGAGCGGCGGCCGGTACGTTCCGAGGGCTGTTCTGGTTGATCTTGAACCAGGAACCATGGACAGCCTCAGAACAGGTCCTTATGGGAATATATTCAGGCCTGATAACTTTGTTTTTGGGCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACCGAAGGAGCTGAATTAGTTGATTCTGTTCTTGATGTGGTCAGAAAAGAAGCTGAGAATTGTGACTGTTTACAAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACCCTACTGATATCAAAGATCAGGGAAGAGTATCCTGACAGGATGATGTTAACTTTCTCTGTGTTCCCTTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTATAATGCCACTCTCTCTGTGCACCAGTTGGTGGAGAATGCTGATGAGTGCATGGTTTTGGATAATGAAGCACTCTATGATATCTGCTTTAGAACCCTCAAGCTCACCAATCCCAAGATGTTTCGACGAGTCTCCGAGCAATTCACGGTCATGTTCAGGAGGAAGGCGTTTTTGCATTGGTACACAGGGGAGGGAATGGATGAGATGGAGTTTACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAGCAGTATCAAGATGCTGTAGCAGAGGATGAGGAGGAAGATGATATGCTGGAGCACGAA

Protein sequence

MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYVPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPKMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEEDDMLEHE

Homology

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy Swiss-Prot
Match: Q41783 (Tubulin beta-6 chain OS=Zea mays OX=4577 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 2.1e-136
Identity = 262/437 (59.95%), Postives = 273/437 (62.47%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTG S+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 ------------------------------------------------------------ 283
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy Swiss-Prot
Match: P93176 (Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 2.1e-136
Identity = 262/435 (60.23%), Postives = 272/435 (62.53%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTGTS+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 ------------------------------------------------------------ 281
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy Swiss-Prot
Match: Q6VAF5 (Tubulin beta-7 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 2.7e-136
Identity = 260/436 (59.63%), Postives = 272/436 (62.39%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+QAGQCGNQIG KFWEVV DEHGIDP GNY GTS +QLERVNVYYNEASGGRYV
Sbjct: 1   MREILHVQAGQCGNQIGGKFWEVVSDEHGIDPKGNYVGTSRVQLERVNVYYNEASGGRYV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLRTGP+G +FRPDNF+FGQNGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRTGPHGQLFRPDNFIFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENC CLQGFQ+CHSLGGGTGSGMGTLLISKI+EEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCACLQGFQICHSLGGGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVEN DECMVLDNEALYDICFRTLKLTNP                    
Sbjct: 181 EPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGATCCL 240

Query: 241 ------------------------------------------------------------ 282
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSSSSQQYRALTIPELTQQMWDARNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy Swiss-Prot
Match: P29514 (Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 3.5e-136
Identity = 263/449 (58.57%), Postives = 278/449 (61.92%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVCDEHGIDPTG Y G S+LQLERVNVYYNEAS GRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRA+L+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 ------------------------------------------------------------ 288
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy Swiss-Prot
Match: Q9ZPN9 (Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 4.6e-136
Identity = 265/441 (60.09%), Postives = 275/441 (62.36%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTGTS+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 ------------------------------------------------------------ 286
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: GAY39105.1 (hypothetical protein CUMW_041840 [Citrus unshiu])

HSP 1 Score: 541 bits (1394), Expect = 1.66e-193
Identity = 260/280 (92.86%), Postives = 271/280 (96.79%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+QAGQCGNQIG KFWEVVCDEHGIDPTGNY G S +QLERVNVY+NEASGGR+V
Sbjct: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLRTGPYG IFRPDNFVFGQNGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQ+CHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPKMFRRVSEQFTVMFRRKAFL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP   +RVSEQFTVMF+RKAFL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSC-KRVSEQFTVMFKRKAFL 240

Query: 241 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEE 280
           HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+A AEDEEE
Sbjct: 241 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAEDEEE 279

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: KAF6162210.1 (hypothetical protein GIB67_008339 [Kingdonia uniflora])

HSP 1 Score: 541 bits (1395), Expect = 2.11e-193
Identity = 265/293 (90.44%), Postives = 272/293 (92.83%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+QAGQCGNQIGAKFWEVVCDEHGID  GNY G S+LQLER NVYYNEASGGRYV
Sbjct: 1   MREILHIQAGQCGNQIGAKFWEVVCDEHGIDGVGNYVGNSHLQLERANVYYNEASGGRYV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLRTGPYG IFRPDNFVFGQNGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRTGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP---------------KMFRR 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP               +MFRR
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSSMSSTFMGNSTSIQEMFRR 240

Query: 241 VSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDE 278
           VSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAE+E
Sbjct: 241 VSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEEE 293

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: KAF3777459.1 (Tubulin beta-6 chain [Nymphaea thermarum])

HSP 1 Score: 536 bits (1380), Expect = 3.40e-191
Identity = 260/288 (90.28%), Postives = 273/288 (94.79%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+QAGQCGNQIG+KFWEV+C+EHGIDPTG Y G S+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQAGQCGNQIGSKFWEVICEEHGIDPTGRYAGASDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP------KMFRRVSEQFTVMF 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P      +MFRRVSEQFT MF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKHQHEMFRRVSEQFTAMF 240

Query: 241 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEEDD 282
           RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++E EDD
Sbjct: 241 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEYEDD 288

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: OEL33765.1 (Tubulin beta-5 chain [Dichanthelium oligosanthes])

HSP 1 Score: 535 bits (1377), Expect = 1.01e-190
Identity = 259/286 (90.56%), Postives = 270/286 (94.41%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVCDEHGIDPTG Y GTS+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP--------KMFRRVSEQFTV 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P        +MFRRVSEQFT 
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKLVYVHEMFRRVSEQFTA 240

Query: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDE 278
           MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++E
Sbjct: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEE 286

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: OEL12956.1 (Tubulin beta-6 chain [Dichanthelium oligosanthes])

HSP 1 Score: 535 bits (1379), Expect = 3.87e-190
Identity = 260/287 (90.59%), Postives = 270/287 (94.08%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTG S+LQLERVNVYYNEAS GR+V
Sbjct: 54  MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 113

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 114 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 173

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 174 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 233

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP---------KMFRRVSEQFT 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P         +MFRRVSEQFT
Sbjct: 234 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKQLQSFSEMFRRVSEQFT 293

Query: 241 VMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDE 278
            MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++E
Sbjct: 294 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEE 340

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy TrEMBL
Match: A0A2H5NHH3 (Tubulin beta chain OS=Citrus unshiu OX=55188 GN=CUMW_041840 PE=3 SV=1)

HSP 1 Score: 541 bits (1394), Expect = 8.06e-194
Identity = 260/280 (92.86%), Postives = 271/280 (96.79%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+QAGQCGNQIG KFWEVVCDEHGIDPTGNY G S +QLERVNVY+NEASGGR+V
Sbjct: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLRTGPYG IFRPDNFVFGQNGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQ+CHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPKMFRRVSEQFTVMFRRKAFL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP   +RVSEQFTVMF+RKAFL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSC-KRVSEQFTVMFKRKAFL 240

Query: 241 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEE 280
           HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+A AEDEEE
Sbjct: 241 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAEDEEE 279

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy TrEMBL
Match: A0A7J7N5C0 (Tubulin beta chain OS=Kingdonia uniflora OX=39325 GN=GIB67_008339 PE=3 SV=1)

HSP 1 Score: 541 bits (1395), Expect = 1.02e-193
Identity = 265/293 (90.44%), Postives = 272/293 (92.83%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+QAGQCGNQIGAKFWEVVCDEHGID  GNY G S+LQLER NVYYNEASGGRYV
Sbjct: 1   MREILHIQAGQCGNQIGAKFWEVVCDEHGIDGVGNYVGNSHLQLERANVYYNEASGGRYV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLRTGPYG IFRPDNFVFGQNGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRTGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP---------------KMFRR 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP               +MFRR
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSSMSSTFMGNSTSIQEMFRR 240

Query: 241 VSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDE 278
           VSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAE+E
Sbjct: 241 VSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEEE 293

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy TrEMBL
Match: A0A1E5W8U0 (Tubulin beta chain OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0005215 PE=3 SV=1)

HSP 1 Score: 535 bits (1377), Expect = 4.89e-191
Identity = 259/286 (90.56%), Postives = 270/286 (94.41%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVCDEHGIDPTG Y GTS+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP--------KMFRRVSEQFTV 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P        +MFRRVSEQFT 
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKLVYVHEMFRRVSEQFTA 240

Query: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDE 278
           MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++E
Sbjct: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEE 286

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy TrEMBL
Match: A0A1E5UJ95 (Tubulin beta chain OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0026024 PE=3 SV=1)

HSP 1 Score: 535 bits (1379), Expect = 1.88e-190
Identity = 260/287 (90.59%), Postives = 270/287 (94.08%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTG S+LQLERVNVYYNEAS GR+V
Sbjct: 54  MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 113

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 114 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 173

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 174 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 233

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP---------KMFRRVSEQFT 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P         +MFRRVSEQFT
Sbjct: 234 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKQLQSFSEMFRRVSEQFT 293

Query: 241 VMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDE 278
            MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++E
Sbjct: 294 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEE 340

[Close]

BLAST of Cp4.1LG05g03420 vs. ExPASy TrEMBL
Match: A0A2P5DQW4 (Tubulin beta chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_039420 PE=3 SV=1)

HSP 1 Score: 533 bits (1372), Expect = 3.39e-190
Identity = 259/291 (89.00%), Postives = 270/291 (92.78%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVCDEHGIDPTG YTG S+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------KMFRRVS 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P             +MFRRVS
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFYVVRDLFVHIMEMFRRVS 240

Query: 241 EQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDE 278
           EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++E
Sbjct: 241 EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEE 291

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR 10
Match: AT5G12250.1 (beta-6 tubulin )

HSP 1 Score: 485.7 bits (1249), Expect = 2.5e-137
Identity = 263/449 (58.57%), Postives = 278/449 (61.92%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVCDEHGIDPTG Y G S+LQLERVNVYYNEAS GRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRA+L+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 ------------------------------------------------------------ 288
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR 10
Match: AT1G75780.1 (tubulin beta-1 chain )

HSP 1 Score: 477.2 bits (1227), Expect = 9.0e-135
Identity = 257/443 (58.01%), Postives = 275/443 (62.08%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTS-NLQLERVNVYYNEASGGRY 60
           MREILH+Q GQCGNQIG+KFWEV+CDEHG+DPTG Y G S +LQLER+NVYYNEASGGRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAVL+DLEPGTMDS+R+GPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
           VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180

Query: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP------------------- 240
           VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ P                   
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCS 240

Query: 241 ------------------------------------------------------------ 288
                                                                       
Sbjct: 241 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR 10
Match: AT5G62690.1 (tubulin beta chain 2 )

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-134
Identity = 262/448 (58.48%), Postives = 273/448 (60.94%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGIDPTG YTG S+LQLER+NVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLR+GPYG  FRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 ------------------------------------------------------------ 288
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR 10
Match: AT5G62700.1 (tubulin beta chain 3 )

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-134
Identity = 262/448 (58.48%), Postives = 273/448 (60.94%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGIDPTG YTG S+LQLER+NVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLR+GPYG  FRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 ------------------------------------------------------------ 288
                                                                       
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMM 300

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR 10
Match: AT1G20010.1 (tubulin beta-5 chain )

HSP 1 Score: 474.6 bits (1220), Expect = 5.8e-134
Identity = 256/443 (57.79%), Postives = 276/443 (62.30%), Query Frame = 0


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTG-TSNLQLERVNVYYNEASGGRY 60
           MREILH+Q GQCGNQIG+KFWEV+CDEHGID TG Y+G T++LQLER+NVYYNEASGGRY
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAVL+DLEPGTMDS+R+GP+G IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
           VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180

Query: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP------------------- 240
           VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ P                   
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCS 240

Query: 241 ------------------------------------------------------------ 288
                                                                       
Sbjct: 241 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNM 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g03420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41783	2.1e-136	59.95	Tubulin beta-6 chain OS=Zea mays OX=4577 GN=TUBB6 PE=2 SV=1	[more]
P93176	2.1e-136	60.23	Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1	[more]
Q6VAF5	2.7e-136	59.63	Tubulin beta-7 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]
P29514	3.5e-136	58.57	Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1	[more]
Q9ZPN9	4.6e-136	60.09	Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1	[more]

BLAST of Cp4.1LG05g03420 vs. NCBI nr


Match Name	E-value	Identity	Description
GAY39105.1	1.66e-193	92.86	hypothetical protein CUMW_041840 [Citrus unshiu]	[more]
KAF6162210.1	2.11e-193	90.44	hypothetical protein GIB67_008339 [Kingdonia uniflora]	[more]
KAF3777459.1	3.40e-191	90.28	Tubulin beta-6 chain [Nymphaea thermarum]	[more]
OEL33765.1	1.01e-190	90.56	Tubulin beta-5 chain [Dichanthelium oligosanthes]	[more]
OEL12956.1	3.87e-190	90.59	Tubulin beta-6 chain [Dichanthelium oligosanthes]	[more]

BLAST of Cp4.1LG05g03420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5NHH3	8.06e-194	92.86	Tubulin beta chain OS=Citrus unshiu OX=55188 GN=CUMW_041840 PE=3 SV=1	[more]
A0A7J7N5C0	1.02e-193	90.44	Tubulin beta chain OS=Kingdonia uniflora OX=39325 GN=GIB67_008339 PE=3 SV=1	[more]
A0A1E5W8U0	4.89e-191	90.56	Tubulin beta chain OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0005215 PE=3...	[more]
A0A1E5UJ95	1.88e-190	90.59	Tubulin beta chain OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0026024 PE=3...	[more]
A0A2P5DQW4	3.39e-190	89.00	Tubulin beta chain OS=Parasponia andersonii OX=3476 GN=PanWU01x14_039420 PE=3 SV...	[more]

BLAST of Cp4.1LG05g03420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12250.1	2.5e-137	58.57	beta-6 tubulin	[more]
AT1G75780.1	9.0e-135	58.01	tubulin beta-1 chain	[more]
AT5G62690.1	1.2e-134	58.48	tubulin beta chain 2	[more]
AT5G62700.1	1.2e-134	58.48	tubulin beta chain 3	[more]
AT1G20010.1	5.8e-134	57.79	tubulin beta-5 chain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 253..287
None	No IPR available	PANTHER	PTHR11588:SF351	TUBULIN BETA-2 CHAIN	coord: 1..221 coord: 221..281
None	No IPR available	CDD	cd02187	beta_tubulin	coord: 2..271 e-value: 3.88441E-177 score: 493.622
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 108..126 score: 88.12 coord: 212..224 score: 57.98 coord: 152..164 score: 91.43 coord: 41..58 score: 74.79 coord: 88..99 score: 87.95
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 93..104 score: 72.69 coord: 151..172 score: 59.63 coord: 106..130 score: 70.76 coord: 132..150 score: 79.04 coord: 176..189 score: 79.11 coord: 10..30 score: 72.97 coord: 51..70 score: 69.96 coord: 190..210 score: 67.82
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..221 coord: 221..281
IPR003008	Tubulin/FtsZ, GTPase domain	SMART	SM00864	Tubulin_4	coord: 47..238 e-value: 7.8E-52 score: 188.2
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..211 e-value: 5.9E-70 score: 235.5
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	3.40.50.1440	Tubulin/FtsZ, GTPase domain	coord: 1..269 e-value: 7.6E-111 score: 371.8
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 1..221
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 140..146
IPR008280	Tubulin/FtsZ, C-terminal	SUPERFAMILY	55307	Tubulin C-terminal domain-like	coord: 221..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g03420.1	Cp4.1LG05g03420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton