Cp4.1LG05g03400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g03400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionYqgFc domain-containing protein
LocationCp4.1LG05: 1836202 .. 1838473 (-)
RNA-Seq ExpressionCp4.1LG05g03400
SyntenyCp4.1LG05g03400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCCAAGGGCTTGATAATGAGCCTAATGAAATTTCAAGGGTTTTCCAAAGGTCTGGTCCTGACCAGATCAAATTGGGATTTCTTCCGAAAATTAATTGTATCGAGGTTCCGGATTCGGGCTTAATTCACTGTGCTTCATCTTCAAGTCTGCAGGTAATAGTTGGAATCTATGAATTCTATTGAGTTTTCAAGTTACAATGGATTGCGAATGAATTTGAATGTGCTGAGTTAATTGTTGCACTAATTGTACGTTTTGGTCTTCGAAGGCGCGAAGCTGAAAATGATTTGTGCGAATCAGCTGCTGGATAACATGGTTCACTGAGCTAGATAGTAGTACAAGATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTTTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGGTATTTTGTTTCTCTGTTCATAGTATTGTGTCTGAGAGATTTGTAGTAATGGGATTTAAGTTGAAGTTGAAATAACGTGACCAGTATTAGTTGTTCTTCGGTTCTGCAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGGTGAGATATTTTACTCTGTTTTGTGATGAATATTTGTTAAATGTTATTTGATGCAATGATAAATGATAAACAATGATTGAAGGGTGGTGCCACAAAATTCTGTAGGGAGGACTTTAATTTACTCGATCTTCAGTGAGTACCTTCTAATGTCCAAATGGGATTTCTTATGAAGCCACTATGAATTTAGGTAGATAGCTCTAGGTTTAAAATGTAATACATTAGCTCTAACTTCACCATTTTTTCCCCTCTTCTTCCGTGATGTGTTGCTGTGCAGCATAGTTATTTTTAATCTTTGATTATCTGATATTGAATTGCCAATGCTATTCTTTCTTGAAACCTTCAGTCATTTTCATGATGTGTATATTTACACCTGCTTCTGGTTTGTGTTTGCAGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGTGTGTTCTTTATCTCTTGAAATTCATCATTATTCACTCTCATCTCTAATTGACATTACATTATTCTGTATACAGGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGGTTGTCAATGTTATTAGTGTGGGCAGCCCTTCCTGTTAGTCTTGTGACTTATGTGACATGCCTTTCAATGTCTCTGTCAATTCAATGACTCGGTCATACAATTGTGATTATGTTTGAATTGTCTAGCTCACCTTTTTGAATCGTGGTATTGACTTGTGAATAGGCTGCTGCATAGCATTGCATTTCATTCAACATTGAATATTGAATTTGTGATTTTGATCTATGTACACAGAATGTGGAACTTCTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGTAATTTGCAATTTTGTTTTCCTCTTTAGTTTTAGCTTTCTATTATCTTGCCAAGGTTCGTAGAATTGCATCTAAAACAGCAATTAAAACTTCAGTTCATTAACAATAGGGTGGTATATCTCAGGCTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAAAGTAAGATGGGTCATATGGGATCAGGTACTGGTTTGTCAATGAAGTTGCTTTCTTCGAAAATTTATTCCCTTAGTACGTGATTTTTGAAACTTCAAAGACCAAATAGAAACTAAATTTAATCATTACATGCAGATACTCCTAGACGGAACGATTTATTTTGAAGCTCAGTCCAAAAAGGGTCGCTGGTAATTCTTCGATATCGTCTTAATTTTAATTCAAGTGAGTGAATCATGTGCTCAAACTCAAGTAGTCAGCTTATTAGGCTCCTCTTTTTTGGAATTTTTCTTATGGAAATTGAGATCAAGTGCTTGTTTCCATGTTTGTTTATTTCTAGATGATTAGTAATGACAACAATGAGACCATATAATTTATTTTACAAATCATGCTCTTATATGTTAAAAATGGCTTACATGGGTATGATATAAAAAGAAGTTGCCATTTTAATTTCATTCAATAGGTCTCTAAATATATAATGAAGTTACATTT

mRNA sequence

TGGGCCAAGGGCTTGATAATGAGCCTAATGAAATTTCAAGGGTTTTCCAAAGGTCTGGTCCTGACCAGATCAAATTGGGATTTCTTCCGAAAATTAATTGTATCGAGGTTCCGGATTCGGGCTTAATTCACTGTGCTTCATCTTCAAGTCTGCAGGCGCGAAGCTGAAAATGATTTGTGCGAATCAGCTGCTGGATAACATGGTTCACTGAGCTAGATAGTAGTACAAGATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTTTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGCTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAAAGTAAGATGGGTCATATGGGATCAGATACTCCTAGACGGAACGATTTATTTTGAAGCTCAGTCCAAAAAGGGTCGCTGGTAATTCTTCGATATCGTCTTAATTTTAATTCAAGTGAGTGAATCATGTGCTCAAACTCAAGTAGTCAGCTTATTAGGCTCCTCTTTTTTGGAATTTTTCTTATGGAAATTGAGATCAAGTGCTTGTTTCCATGTTTGTTTATTTCTAGATGATTAGTAATGACAACAATGAGACCATATAATTTATTTTACAAATCATGCTCTTATATGTTAAAAATGGCTTACATGGGTATGATATAAAAAGAAGTTGCCATTTTAATTTCATTCAATAGGTCTCTAAATATATAATGAAGTTACATTT

Coding sequence (CDS)

ATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTTTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGCTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAA

Protein sequence

MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER
Homology
[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy Swiss-Prot
Match: A4XKC6 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=Csac_1776 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-12
Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 0 

Query: 23  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 82
           R L LD+G + +G+A+SDP    A P  VL  +K +++   LD  ++ +E  +   ++GY
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVLDLQKEDLY-SCLD--KIFNEHQIEKIVIGY 61

Query: 83  PFDGQRRNADAVQVKI-FIDDLC-KTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILS 142
           P    + + D    K+  ID++C +  +   V    WDE F++K VE +++   +     
Sbjct: 62  PV--SKFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSWQKR 121

Query: 143 KTIIDKFAAVGILQAYLDHFN 162
           K ++DK AAV ILQ YLD  N
Sbjct: 122 KKVVDKLAAVYILQGYLDFIN 137

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy Swiss-Prot
Match: Q0AZP9 (Putative pre-16S rRNA nuclease OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) OX=335541 GN=Swol_0470 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-12
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 0 

Query: 23  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 82
           R +GLD+G+K +G+A SDP    A   S+L RK     L  L  Q L  E  +   ++G 
Sbjct: 2   RIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYL--QELCQEFQVEKIVLGL 61

Query: 83  PFD-GQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSK 142
           P +        A++ + F   L +  K   +   FWDE  +SK+ E ++    L     K
Sbjct: 62  PLNMNGTMGPKALETQEFARALQEALK---IPVDFWDERLSSKSAERVLLEADLSRKRRK 121

Query: 143 TIIDKFAAVGILQAYLD 159
            +IDK AAV ILQAYLD
Sbjct: 122 ELIDKIAAVHILQAYLD 133

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy Swiss-Prot
Match: C4Z578 (Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=EUBELI_00774 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 0 

Query: 23  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTN-MHLMALDFQRLISELSLSGFIVG 82
           R +GLDVG K VG+A+SDP    A P   + RK+ N +       +++ISE  ++  +VG
Sbjct: 2   RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61

Query: 83  YPFDGQRRNAD---AVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPI 142
           YP     +N D     + K   +      +  G+  T WDE  T+   + +++   +   
Sbjct: 62  YP-----KNMDDTIGERAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRE 121

Query: 143 LSKTIIDKFAAVGILQAYLD 159
             KT+ID+ AAV IL+ Y++
Sbjct: 122 NRKTVIDQLAAVFILRGYME 136

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy Swiss-Prot
Match: B6IN25 (Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=RC1_1518 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 47/152 (30.92%), Postives = 73/152 (48.03%), Query Frame = 0 

Query: 14  LKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISEL 73
           LK +    GR +GLD+G+K +GLAVSDP   +ASP+  + R K      A +  R + + 
Sbjct: 9   LKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQD--AQELARAMRDR 68

Query: 74  SLSGFIVGYPFDGQRRNADAVQ-VKIFIDDLCKTGKLEGV--KYTFWDECFTSKNVELLI 133
            +   +VG P +         Q V+ F   L +  +L G   +  FWDE  ++  VE ++
Sbjct: 69  DVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTSAVERMM 128

Query: 134 KPLKLPPILSKTIIDKFAAVGILQAYLDHFNR 163
               +       ++DK AA  ILQ  LD   +
Sbjct: 129 IGWDMTRKRRDEVVDKMAAAYILQGALDRLRQ 158

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy Swiss-Prot
Match: B8ZUJ7 (Putative pre-16S rRNA nuclease OS=Mycobacterium leprae (strain Br4923) OX=561304 GN=MLBr00513 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-11
Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = 0 

Query: 12  DLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLIS 71
           DL K    ERGR LG+DVG   +G+A SDPD  +A+P+  + R ++  HL  L    L+ 
Sbjct: 16  DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRL--AELVV 75

Query: 72  ELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIK 131
           EL +   +VG P+    R   + +  I   +     ++  V     DE  T+ + + L++
Sbjct: 76  ELQVVEVVVGLPWTLTDRTGSSAKDAIDTAE-ALARRVAPVPVRLVDERLTTVSAQRLLR 135

Query: 132 PLKLPPILSKTIIDKFAAVGILQAYLD 159
              +     + +ID+ AAV ILQ +LD
Sbjct: 136 AAGVRAKDQRAVIDQAAAVVILQNWLD 159

[Close]
BLAST of Cp4.1LG05g03400 vs. NCBI nr
Match: XP_023533829.1 (uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340 bits (873), Expect = 5.27e-118
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169
           FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169

[Close]
BLAST of Cp4.1LG05g03400 vs. NCBI nr
Match: XP_022995255.1 (uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharacterized protein LOC111490857 [Cucurbita maxima])

HSP 1 Score: 339 bits (869), Expect = 2.15e-117
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169
           FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQ YLDHFNRRPELEER
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 169

[Close]
BLAST of Cp4.1LG05g03400 vs. NCBI nr
Match: XP_022957830.1 (uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957832.1 uncharacterized protein LOC111459253 [Cucurbita moschata])

HSP 1 Score: 338 bits (866), Expect = 6.15e-117
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169
           FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQ YLDHFNRRPEL+ER
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELDER 169

[Close]
BLAST of Cp4.1LG05g03400 vs. NCBI nr
Match: KAG7036046.1 (hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323 bits (829), Expect = 6.47e-111
Identity = 167/194 (86.08%), Postives = 167/194 (86.08%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNAD-------------------------AVQ 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRN D                         AVQ
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQA 169
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQ 
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180

[Close]
BLAST of Cp4.1LG05g03400 vs. NCBI nr
Match: KAG6606099.1 (hypothetical protein SDJN03_03416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 309 bits (791), Expect = 4.01e-105
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100

Query: 76  SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 135
           SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL
Sbjct: 101 SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 160

Query: 136 PPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169
           PPILSKTIIDKFAAVGILQ YLDHFNRRPELEER
Sbjct: 161 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy TrEMBL
Match: A0A6J1K3L4 (uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 1.04e-117
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169
           FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQ YLDHFNRRPELEER
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 169

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy TrEMBL
Match: A0A6J1H0B7 (uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC111459253 PE=3 SV=1)

HSP 1 Score: 338 bits (866), Expect = 2.98e-117
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169
           FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQ YLDHFNRRPEL+ER
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELDER 169

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy TrEMBL
Match: A0A6J1E3H7 (uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026145 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 1.36e-101
Identity = 147/166 (88.55%), Postives = 154/166 (92.77%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYV+PLN+FRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MH
Sbjct: 1   MKYVKPLNMFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA D QRLISELSL+GFIVGYPFD QRRNADAVQVKIFIDDLCKTG LEGVKYTFWDEC
Sbjct: 61  LMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPEL 166
           FTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQ YLD+ NRRPEL
Sbjct: 121 FTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYHNRRPEL 166

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy TrEMBL
Match: A0A0A0KMK7 (YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 7.69e-95
Identity = 141/168 (83.93%), Postives = 148/168 (88.10%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEE 168
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQ YLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 168

[Close]
BLAST of Cp4.1LG05g03400 vs. ExPASy TrEMBL
Match: A0A1S3ATQ4 (putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482742 PE=3 SV=1)

HSP 1 Score: 265 bits (678), Expect = 1.36e-88
Identity = 132/168 (78.57%), Postives = 145/168 (86.31%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYV+P  LFRDLLK + L+  R LGLDVGDKYVGLAVSDPDNKIASPLSVL RKK  M 
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ+LISE SL+GFIVGYPFD  R+N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNRRPELEE 168
           FTSKNVE +IKPL L P +SKT++DKFAAVGILQ YLD+FNRRPEL E
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE 168

[Close]
BLAST of Cp4.1LG05g03400 vs. TAIR 10
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 198.7 bits (504), Expect = 3.6e-51
Identity = 97/162 (59.88%), Postives = 119/162 (73.46%), Query Frame = 0 

Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYV+PL+L  + LK      GRFLGLDVGDKYVGLA+SDP N +ASPLSVL RKK+N+ 
Sbjct: 1   MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ L+   S+SG +VGYPF       D V V +FI++L KT KL+ VKYT+WDE 
Sbjct: 61  LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120

Query: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQAYLDHFNR 163
            +SK VEL++KPL L P+  KT++DK AAV ILQ YLD+ NR
Sbjct: 121 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANR 162

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g03400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4XKC64.2e-1233.33Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain A... [more]
Q0AZP97.2e-1235.77Putative pre-16S rRNA nuclease OS=Syntrophomonas wolfei subsp. wolfei (strain DS... [more]
C4Z5781.2e-1131.43Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3... [more]
B6IN251.6e-1130.92Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / S... [more]
B8ZUJ74.7e-1131.97Putative pre-16S rRNA nuclease OS=Mycobacterium leprae (strain Br4923) OX=561304... [more]
BLAST of Cp4.1LG05g03400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023533829.15.27e-118100.00uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo][more]
XP_022995255.12.15e-11799.41uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharac... [more]
XP_022957830.16.15e-11798.82uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 unchar... [more]
KAG7036046.16.47e-11186.08hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6606099.14.01e-10599.35hypothetical protein SDJN03_03416, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG05g03400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K3L41.04e-11799.41uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857... [more]
A0A6J1H0B72.98e-11798.82uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC1114592... [more]
A0A6J1E3H71.36e-10188.55uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
A0A0A0KMK77.69e-9583.93YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 ... [more]
A0A1S3ATQ41.36e-8878.57putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348274... [more]
BLAST of Cp4.1LG05g03400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52905.13.6e-5159.88Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 22..126
e-value: 2.1E-19
score: 80.5
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 22..165
e-value: 4.8E-28
score: 99.8
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 23..158
e-value: 1.2E-25
score: 90.4
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMTIGR00250TIGR00250coord: 25..158
e-value: 6.6E-12
score: 43.6
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 1..166
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 22..161
score: 16.61035
IPR005227Putative pre-16S rRNA nucleaseCDDcd16964YqgFcoord: 24..158
e-value: 4.489E-30
score: 104.492
NoneNo IPR availablePANTHERPTHR33317:SF1POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 1..166
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 22..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g03400.1Cp4.1LG05g03400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000967 rRNA 5'-end processing
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006364 rRNA processing