Cp4.1LG05g03380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g03380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ribosomal L1 domain-containing protein 1-like
Location	Cp4.1LG05: 1818122 .. 1819261 (-)
RNA-Seq Expression	Cp4.1LG05g03380
Synteny	Cp4.1LG05g03380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGCCGGATTCTGATACTCTCTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTCGAATCCCTCCTTCAATGGCGAAGTTCCAAACGAGAGAAGCCTCAACTTCTGGACCAGGAGGATTTTTTATACCTCGTCGTTACTCTCAAGAAAATCCCTCCAAAAGGTCGTACAAACCCTTACAAAATCCCTCTTCCCCATCCTCTTCGTTCTGAATCGTCTGAACTCTGCCTCATAATCGACGATAGAACCAAGTCCAATCTTACCAAAGACGACGCCAGGAAGAAAATCCAGTCGGAAAACATCCCGATTTCGAAGGTCATCAAGCTGTCGAAGCTTAAATCCGATTACCGCCCCTTTGAAGCGAAACGGAAGCTCTGCGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCAATGCTGCCGAGTCTGTTGGGGAAGCACTTTTTCAAGAAGAAAAAAATTCCAGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAAGAGCTGTTCGTCGGGTTTGTTGTATTTGAGGAGAGGGACTTGTAGTGTGGTGAAAGTGGCAAAGACGTCAATGGAAGTTGAAGAGATCGTGAATAATGTGATTGCGGCCATTGATGGGATTGCAGAGATTGTGCCTAAGAAATGGAGCAATGTGCAATCATTTCATTTGAAGGTCCTGGAATCTATTGCATTGCCACTTTACCAAACAGTGCCGGAGTTGAAAATGAAGATTGAGGCGGCCGTGAGGGGTAAAGAAGAGGAAACAAACAAAGAAATAGCAGATGCAGGTAAGAGTCCTACTCCTGTAAAGGTCAATAACAAAAAGGAGAAGAAGTTGGGCAAGAAGAAGGGGAGGATACATGAAGTTCGTTATATGGACAGTAATGGCTTAAAGCTATCTGAAGAAGAAGATGAACAGGACAGTGATGTTGATGAGGTTAGTGAGAATATCGAAAAGGGTAAGAAATGGAGTAGAGTAAAGAAAACGAAGGAAGAGCTTCAAAGTGAGTTGAATGTCGAGAAAACATCGAAGAAGAAGAAGAAGAAGAATGGAGATGAAGAATCCAGTGGGAAGAAGGTGAAAAAGACAAAGAAGTTGAAAGAAGTGAAATGA

mRNA sequence

ATGGCTTCGCCGGATTCTGATACTCTCTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTCGAATCCCTCCTTCAATGGCGAAGTTCCAAACGAGAGAAGCCTCAACTTCTGGACCAGGAGGATTTTTTATACCTCGTCGTTACTCTCAAGAAAATCCCTCCAAAAGGTCGTACAAACCCTTACAAAATCCCTCTTCCCCATCCTCTTCGTTCTGAATCGTCTGAACTCTGCCTCATAATCGACGATAGAACCAAGTCCAATCTTACCAAAGACGACGCCAGGAAGAAAATCCAGTCGGAAAACATCCCGATTTCGAAGGTCATCAAGCTGTCGAAGCTTAAATCCGATTACCGCCCCTTTGAAGCGAAACGGAAGCTCTGCGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCAATGCTGCCGAGTCTGTTGGGGAAGCACTTTTTCAAGAAGAAAAAAATTCCAGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAAGAGCTGTTCGTCGGGTTTGTTGTATTTGAGGAGAGGGACTTGTAGTGTGGTGAAAGTGGCAAAGACGTCAATGGAAGTTGAAGAGATCGTGAATAATGTGATTGCGGCCATTGATGGGATTGCAGAGATTGTGCCTAAGAAATGGAGCAATGTGCAATCATTTCATTTGAAGGTCCTGGAATCTATTGCATTGCCACTTTACCAAACAGTGCCGGAGTTGAAAATGAAGATTGAGGCGGCCGTGAGGGGTAAAGAAGAGGAAACAAACAAAGAAATAGCAGATGCAGGTAAGAGTCCTACTCCTGTAAAGGTCAATAACAAAAAGGAGAAGAAGTTGGGCAAGAAGAAGGGGAGGATACATGAAGTTCGTTATATGGACAGTAATGGCTTAAAGCTATCTGAAGAAGAAGATGAACAGGACAGTGATGTTGATGAGGTTAGTGAGAATATCGAAAAGGGTAAGAAATGGAGTAGAGTAAAGAAAACGAAGGAAGAGCTTCAAAGTGAGTTGAATGTCGAGAAAACATCGAAGAAGAAGAAGAAGAAGAATGGAGATGAAGAATCCAGTGGGAAGAAGGTGAAAAAGACAAAGAAGTTGAAAGAAGTGAAATGA

Coding sequence (CDS)

ATGGCTTCGCCGGATTCTGATACTCTCTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTCGAATCCCTCCTTCAATGGCGAAGTTCCAAACGAGAGAAGCCTCAACTTCTGGACCAGGAGGATTTTTTATACCTCGTCGTTACTCTCAAGAAAATCCCTCCAAAAGGTCGTACAAACCCTTACAAAATCCCTCTTCCCCATCCTCTTCGTTCTGAATCGTCTGAACTCTGCCTCATAATCGACGATAGAACCAAGTCCAATCTTACCAAAGACGACGCCAGGAAGAAAATCCAGTCGGAAAACATCCCGATTTCGAAGGTCATCAAGCTGTCGAAGCTTAAATCCGATTACCGCCCCTTTGAAGCGAAACGGAAGCTCTGCGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCAATGCTGCCGAGTCTGTTGGGGAAGCACTTTTTCAAGAAGAAAAAAATTCCAGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAAGAGCTGTTCGTCGGGTTTGTTGTATTTGAGGAGAGGGACTTGTAGTGTGGTGAAAGTGGCAAAGACGTCAATGGAAGTTGAAGAGATCGTGAATAATGTGATTGCGGCCATTGATGGGATTGCAGAGATTGTGCCTAAGAAATGGAGCAATGTGCAATCATTTCATTTGAAGGTCCTGGAATCTATTGCATTGCCACTTTACCAAACAGTGCCGGAGTTGAAAATGAAGATTGAGGCGGCCGTGAGGGGTAAAGAAGAGGAAACAAACAAAGAAATAGCAGATGCAGGTAAGAGTCCTACTCCTGTAAAGGTCAATAACAAAAAGGAGAAGAAGTTGGGCAAGAAGAAGGGGAGGATACATGAAGTTCGTTATATGGACAGTAATGGCTTAAAGCTATCTGAAGAAGAAGATGAACAGGACAGTGATGTTGATGAGGTTAGTGAGAATATCGAAAAGGGTAAGAAATGGAGTAGAGTAAAGAAAACGAAGGAAGAGCTTCAAAGTGAGTTGAATGTCGAGAAAACATCGAAGAAGAAGAAGAAGAAGAATGGAGATGAAGAATCCAGTGGGAAGAAGGTGAAAAAGACAAAGAAGTTGAAAGAAGTGAAATGA

Protein sequence

MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNGDEESSGKKVKKTKKLKEVK

Homology

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy Swiss-Prot
Match: O76021 (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-30
Identity = 112/384 (29.17%), Postives = 203/384 (52.86%), Query Frame = 0


Query: 2   ASPDSDTLSSRVRRETAEKAVESLL-QWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 61
           ++P + T   ++ +E   KAV++LL   +S K     LL++ + L+L+V L KIP K   
Sbjct: 20  STPAAPTARKQLDKEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELR 79

Query: 62  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDA--RKKIQSENI-PISKVIKLSKLKS 121
              ++ LPH +RS+S ++CL   D   S   K +   RK +    I  +S++I L  LK 
Sbjct: 80  --VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKK 139

Query: 122 DYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKS 181
           +Y+ +EAK +L  S+D F  D R+  +LPSL+G+HF+++KK+PV +NL  KN   +I   
Sbjct: 140 EYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDC 199

Query: 182 CSSGLLYL-RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLE 241
               +L + + G+CS +++    M++E I+ N++A   G++E +P+KW +V+   +K  +
Sbjct: 200 IGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEK 259

Query: 242 SIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVK---VNNKKEKKLGKKKG 301
           S ALP++ +           V   +E T + + +  K     K    N +K+K+  KK+ 
Sbjct: 260 SAALPIFSSF----------VSNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQ 319

Query: 302 RIHEVRYMDSNGLKLSEEED----EQDSDVDEVSENIEK--GKKWSRVKKTKE---ELQS 361
           +  +   + S      E  D    + +S  ++  E+ +K  G+  ++VK T E   E+  
Sbjct: 320 QARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNESEDEIPQ 379

Query: 362 ELNVEKTSKKKKKKNGDEESSGKK 369
            + + K +   +K    + ++GKK
Sbjct: 380 LVPIGKKTPANEKVEIQKHATGKK 391

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy Swiss-Prot
Match: Q5RCE6 (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii OX=9601 GN=RSL1D1 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-30
Identity = 112/384 (29.17%), Postives = 203/384 (52.86%), Query Frame = 0


Query: 2   ASPDSDTLSSRVRRETAEKAVESLL-QWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 61
           ++P + T   ++ +E   KAV++LL   +S K     LL++ + L+L+V L KIP K   
Sbjct: 20  STPAAPTARKQLDKEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELR 79

Query: 62  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDA--RKKIQSENI-PISKVIKLSKLKS 121
              ++ LPH +RS+S ++CL   D   S   K +   RK +    I  +S++I L  LK 
Sbjct: 80  --VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKK 139

Query: 122 DYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKS 181
           +Y+ +EAK +L  S+D F  D R+  +LPSL+G+HF+++KK+PV +NL  KN   +I   
Sbjct: 140 EYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDC 199

Query: 182 CSSGLLYL-RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLE 241
               +L + + G+CS +++    M++E I+ N++A   G++E +P+KW +V+   +K  +
Sbjct: 200 IGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEK 259

Query: 242 SIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVK---VNNKKEKKLGKKKG 301
           S ALP++ +           V   +E T + + +  K     K    N +K+K+  KK+ 
Sbjct: 260 SAALPIFSSF----------VSNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQ 319

Query: 302 RIHEVRYMDSNGLKLSEEED----EQDSDVDEVSENIEK--GKKWSRVKKTKE---ELQS 361
           +  +   + S      E  D    + +S  ++  E+ +K  G+  ++VK T E   E+  
Sbjct: 320 QARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNESEDEIPQ 379

Query: 362 ELNVEKTSKKKKKKNGDEESSGKK 369
            + + K +   +K    + ++GKK
Sbjct: 380 LVPIGKKTPANEKVEIQKHATGKK 391

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy Swiss-Prot
Match: A4FV97 (Ribosomal L1 domain-containing protein 1 OS=Bos taurus OX=9913 GN=RSL1D1 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.9e-30
Identity = 91/302 (30.13%), Postives = 166/302 (54.97%), Query Frame = 0


Query: 2   ASPDSDTLSSRVRRETAEKAVESLL-QWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 61
           ++P++     ++  E  +KAVE+LL   RS K     LL++ +  +L+V L KIP K   
Sbjct: 18  STPETPPGPEQLDEEQVKKAVEALLAHSRSRKNANGLLLNENENFFLMVVLWKIPSKELR 77

Query: 62  NPYKIPLPHPLRSESSELCLIIDD--RTKSNLTKDDARKKIQSENI-PISKVIKLSKLKS 121
              ++ LPH +RS+ +++CL   D     S  T+   +K + +  I  IS++I    LK 
Sbjct: 78  --VRLSLPHGIRSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKK 137

Query: 122 DYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKS 181
           +Y+ +EAK +L  S+D F  D R+  +LPS LG+HF+ +KK+PV +NL+ K    +I   
Sbjct: 138 EYKAYEAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDC 197

Query: 182 CSSGLLYL-RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLE 241
               +L + + G+CS +++  T M ++ IV NV+A    +++ +P+KW +V+   +K   
Sbjct: 198 IGGTVLNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTER 257

Query: 242 SIALPLYQTVPELKMKIEAAVRG-KEEETNKEIADAGKSPTP---VKVNNKKEKKLGKKK 295
           S++LP++ +     +  +   +G +  +  K+++   +  T     +   KKEKKL K+ 
Sbjct: 258 SVSLPVFSSF----VSSQGEAKGLRTRDLLKKVSKKSRKKTERALKRQQEKKEKKLLKQA 313

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy Swiss-Prot
Match: Q8BVY0 (Ribosomal L1 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rsl1d1 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-28
Identity = 110/364 (30.22%), Postives = 189/364 (51.92%), Query Frame = 0


Query: 15  RETAEKAVESLLQWRSSKREKPQ-LLDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHPLRS 74
           RE   KAVE +     SK+   + LL   + L+L+V L KIP K      K+PLPH + S
Sbjct: 33  REQIRKAVEVISNRSKSKKNNNELLLSGSENLFLMVILWKIPEKELR--VKVPLPHSILS 92

Query: 75  ESSELCLIIDDRTKSNLTKDDARKKIQSEN--IPISKVIKLSKLKSDYRPFEAKRKLCDS 134
           ESS++CL   D   S    +   KK+  ++    IS++I    LK++Y+ +EAK +L  S
Sbjct: 93  ESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGS 152

Query: 135 YDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYL-RRGTC 194
           +++F  D R+   LPS +G+HF+++KK+PV +NL  KN  ++I +  +  +L + +RG+C
Sbjct: 153 FEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSC 212

Query: 195 SVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVPELK 254
           S +++  T ME E IV+N++A  + ++E +P+KW +V+   LK  +S++LP++ +    +
Sbjct: 213 STIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSFVTSQ 272

Query: 255 MKIEAAVRG-KEEETNKEIADAGKSPTPVKVNNKKEKK---LGKKKGRIHEVRYMDSNGL 314
            +   ++R  +++E  K   +  K     K+  KK KK   L  + G             
Sbjct: 273 DENAVSLRSLRKQELKKRKRENAKLKKESKMLRKKSKKATSLLTQSGLASSAPAKSPGAQ 332

Query: 315 KLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNGDEESSG 371
           K    +  +   V E  E  E   +   + +T ++   ++    T K  K K+      G
Sbjct: 333 KKKTNKAHKKQKVTEECE--EAIPQLVPIGETPDKENVKMQENITGKTPKSKSDPSTPKG 392

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy Swiss-Prot
Match: Q9UT32 (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC8F11.04 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.5e-25
Identity = 128/391 (32.74%), Postives = 197/391 (50.38%), Query Frame = 0


Query: 3   SPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLL-DQEDFLYLV----VTLKKIPPK 62
           +P     S+ +  E+  K+ E++     S+ +K  LL D++D +  V     TLK I   
Sbjct: 11  APLEKVCSALLEYESKRKSSENI----DSESKKTNLLEDEQDDIEPVWLQLATLKFIGNN 70

Query: 63  GRTNPYKIPLPHPLRSESSELCLIIDD--RTKSNLTKDDARKKIQSENIPISKVIKLSKL 122
            +  PYKI + +P+   SSE CLI+ D  R   +L  +    K+      +++VI LSKL
Sbjct: 71  RKLIPYKIAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKL 130

Query: 123 KSDYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIE 182
           K+ +  +E KR+L D +D+F ADDRVIPMLP +LGK F++K K+PVP+ +  K   EQ++
Sbjct: 131 KAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKI-SKGTAEQLK 190

Query: 183 KSCSS--GLLYLRRGTCS--VVK---VAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQ 242
           +   S  G  Y     CS  ++K   V+ TS E+ E V +++  +     IVP     + 
Sbjct: 191 REVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVS--KHIVPDGAKGIA 250

Query: 243 SFHLKVLESIALPLYQTVPELKMKIEAA--VRGKEEETNKEIADAGKSPTPVKVNNKKEK 302
           S HLK  +SIA+PL+   P LK  I ++  V  KE  ++K  +D    P     + KK+K
Sbjct: 251 SIHLKTSQSIAIPLWNN-PNLKELIASSRKVVTKETASSKRKSDEESLP-----SQKKQK 310

Query: 303 KLGKKKGRIHEVRYMDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSEL 362
           K+   K                    + +DS    VS+     KK   VK+  ++L S  
Sbjct: 311 KVEVAK--------------------ESKDSKQQNVSD-----KKQVTVKEVPKKL-SVK 350

Query: 363 NVEKTSKKKKKKNGDEESSGKKVKKTKKLKE 378
           N  KT+      N DE+S GKK K + K+ +
Sbjct: 371 NAAKTT------NRDEDSKGKKAKASPKVSQ 350

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: XP_023532538.1 (ribosomal L1 domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 704 bits (1818), Expect = 4.97e-255
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT
Sbjct: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
           GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL
Sbjct: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY
Sbjct: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300

Query: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 360
           MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG
Sbjct: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 360

Query: 361 DEESSGKKVKKTKKLKEVK 379
           DEESSGKKVKKTKKLKEVK
Sbjct: 361 DEESSGKKVKKTKKLKEVK 379

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: XP_023521630.1 (ribosomal L1 domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 688 bits (1776), Expect = 1.50e-248
Identity = 377/384 (98.18%), Postives = 378/384 (98.44%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT
Sbjct: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
           GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL
Sbjct: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           PLYQTVPELKMKIEAAVRGKEEETNKE+ADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY
Sbjct: 241 PLYQTVPELKMKIEAAVRGKEEETNKEVADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300

Query: 301 MDSNGLKLS-EEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKK---- 360
           MDSNGLKLS EEEDEQDSDVDEVSENIEKGKK SRVKKTKEELQSELNVEKTSKKK    
Sbjct: 301 MDSNGLKLSAEEEDEQDSDVDEVSENIEKGKKRSRVKKTKEELQSELNVEKTSKKKMKKK 360

Query: 361 KKKNGDEESSGKKVKKTKKLKEVK 379
           KKKNGDEESSGKKVKKTKKLKEVK
Sbjct: 361 KKKNGDEESSGKKVKKTKKLKEVK 384

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: XP_022958691.1 (ribosomal L1 domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 670 bits (1729), Expect = 2.18e-241
Identity = 360/368 (97.83%), Postives = 363/368 (98.64%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT
Sbjct: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHF+KKKKIPVPLNLRHKNWKEQIEKSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIEKSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
            LLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL
Sbjct: 181 ALLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           PLYQTVPELKMKIEAAVRGKEEETNKE+ADAGKSPTPVKV+NKKEKKLGKKKGRIHEVRY
Sbjct: 241 PLYQTVPELKMKIEAAVRGKEEETNKEVADAGKSPTPVKVSNKKEKKLGKKKGRIHEVRY 300

Query: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKK-- 360
           MDSNGLKLSEEEDEQDSDVDEVSENIEKGKK SRVKK KEELQSELNVEKTSKKKKKK  
Sbjct: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKRSRVKKAKEELQSELNVEKTSKKKKKKKK 360

Query: 361 NGDEESSG 366
           NGDEESSG
Sbjct: 361 NGDEESSG 368

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: KAG7036050.1 (Ribosomal L1 domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 667 bits (1722), Expect = 2.03e-240
Identity = 363/379 (95.78%), Postives = 369/379 (97.36%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT
Sbjct: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
            LLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL
Sbjct: 181 ALLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           PLYQTVPELKMKIEAAVRGKEEETNKE+AD GKSPTPVKVNNKKEKKLGKKKGRIHEVRY
Sbjct: 241 PLYQTVPELKMKIEAAVRGKEEETNKEVADTGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300

Query: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 360
           MDSNGLKLSEE+DEQDSDVDEVSENIEKGKK SRVKK KEELQSELNVEKTSKK    + 
Sbjct: 301 MDSNGLKLSEEQDEQDSDVDEVSENIEKGKKRSRVKKAKEELQSELNVEKTSKKMDS-DK 360

Query: 361 DEESSGKKVKKTKKLKEVK 379
            ++SSGKKVKKT+KLKEVK
Sbjct: 361 QKKSSGKKVKKTEKLKEVK 378

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: KAG6606104.1 (Ribosomal L1 domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 666 bits (1719), Expect = 5.82e-240
Identity = 362/379 (95.51%), Postives = 369/379 (97.36%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT
Sbjct: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
            LLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL
Sbjct: 181 ALLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           PLYQTVPELKMKIEAAVRGKEEETNKE+ADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY
Sbjct: 241 PLYQTVPELKMKIEAAVRGKEEETNKEVADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300

Query: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 360
           MDSNGLKLSEE+DEQDSDVDEVSENIEKGKK SRVKK KEELQSE NVEKT+KK    + 
Sbjct: 301 MDSNGLKLSEEQDEQDSDVDEVSENIEKGKKRSRVKKAKEELQSEFNVEKTAKKMDS-DK 360

Query: 361 DEESSGKKVKKTKKLKEVK 379
            ++SSGKKVKKT+KLKEVK
Sbjct: 361 QKKSSGKKVKKTEKLKEVK 378

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy TrEMBL
Match: A0A6J1H2T1 (ribosomal L1 domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459842 PE=4 SV=1)

HSP 1 Score: 670 bits (1729), Expect = 1.05e-241
Identity = 360/368 (97.83%), Postives = 363/368 (98.64%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT
Sbjct: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHF+KKKKIPVPLNLRHKNWKEQIEKSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIEKSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
            LLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL
Sbjct: 181 ALLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           PLYQTVPELKMKIEAAVRGKEEETNKE+ADAGKSPTPVKV+NKKEKKLGKKKGRIHEVRY
Sbjct: 241 PLYQTVPELKMKIEAAVRGKEEETNKEVADAGKSPTPVKVSNKKEKKLGKKKGRIHEVRY 300

Query: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKK-- 360
           MDSNGLKLSEEEDEQDSDVDEVSENIEKGKK SRVKK KEELQSELNVEKTSKKKKKK  
Sbjct: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKRSRVKKAKEELQSELNVEKTSKKKKKKKK 360

Query: 361 NGDEESSG 366
           NGDEESSG
Sbjct: 361 NGDEESSG 368

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy TrEMBL
Match: A0A6J1K7W6 (ribosomal L1 domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111491456 PE=4 SV=1)

HSP 1 Score: 665 bits (1717), Expect = 5.08e-240
Identity = 359/379 (94.72%), Postives = 367/379 (96.83%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT
Sbjct: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKK QSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKTQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLC+SYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS
Sbjct: 121 PFEAKRKLCESYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
            LLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL
Sbjct: 181 ALLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           PLYQTVPELKMKIE+AVRGKEEETNKE+ADAGK PTP+KV+NKKEKKLGKKKGRI EVRY
Sbjct: 241 PLYQTVPELKMKIESAVRGKEEETNKEVADAGKGPTPIKVSNKKEKKLGKKKGRIQEVRY 300

Query: 301 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 360
           MDSNGLKLSEE+DEQDSDVDEVSENIEKGKK SRVKK KEELQSE+NVEKTSKK    NG
Sbjct: 301 MDSNGLKLSEEQDEQDSDVDEVSENIEKGKKRSRVKKAKEELQSEMNVEKTSKK----NG 360

Query: 361 DEESSGKKVKKTKKLKEVK 379
           DEESSGKKVKKTKK K +K
Sbjct: 361 DEESSGKKVKKTKKFKALK 375

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy TrEMBL
Match: A0A6J1ESQ8 (ribosomal L1 domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111435655 PE=4 SV=1)

HSP 1 Score: 550 bits (1418), Expect = 2.19e-193
Identity = 300/365 (82.19%), Postives = 328/365 (89.86%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MAS DS  LSSRVRRETAEKAVESLLQWR+SKREKPQL DQEDFLYLVV LKKIPPKGRT
Sbjct: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPH  RS+SSE+CLIIDDR++SNLTKD+ARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIP+LPSLLGKHF+KKKKIPVPLNLRHKNWKEQIE+SCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
            LLYLR GTCSVVKVAKTSMEVEEIV+NVIAAIDGIAEIVPKKWSNV+SFHLKVLESIAL
Sbjct: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           P+YQTVPELK+KI+AAV+G+E+ T KE  +AGKSPTPVKV+NKKEKK   KKGRIHEVRY
Sbjct: 241 PIYQTVPELKLKIDAAVKGEEKGTEKED-EAGKSPTPVKVSNKKEKKSSMKKGRIHEVRY 300

Query: 301 MDSNGLKLSEEED-----EQDSDVDEVSENIEKG------KKWSRVKKTKEELQSELNVE 354
           MDSNG +LS+E+D     ++D D  EVSEN++KG      K  SRV K KEELQ++LN E
Sbjct: 301 MDSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKTRSRVNKGKEELQNDLNSE 360

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy TrEMBL
Match: A0A6J1HY99 (ribosomal L1 domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469121 PE=4 SV=1)

HSP 1 Score: 547 bits (1410), Expect = 3.61e-192
Identity = 300/365 (82.19%), Postives = 327/365 (89.59%), Query Frame = 0


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 60
           MAS DS  LSSRVRRETAEKAVESLLQWR+SKREKPQL D EDFLYLVV LKKIPPKGRT
Sbjct: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDLEDFLYLVVALKKIPPKGRT 60

Query: 61  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPH LRS+SSE+CLIIDDR++SNLTKDDARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHSLRSDSSEICLIIDDRSRSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 180
           PFEAKRKLCDSYDMFFADDRVIP+LPSLLGKHF+KKKKIPVPLNLRHKNWKEQIE+SCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180

Query: 181 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 240
            LLYLR GTCSVVKVAKTSMEVEEIV+NVIAAIDGIAEIVPKKWSNV+SFHLKVLESIAL
Sbjct: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240

Query: 241 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 300
           P+YQTVPELK+KI+AAV+G E+ T KE  +AGKSPTPVKV+NKKEKK   KKGRIHEVRY
Sbjct: 241 PIYQTVPELKLKIDAAVKGDEKGTEKED-EAGKSPTPVKVSNKKEKKSRMKKGRIHEVRY 300

Query: 301 MDSNGLKLSEEED-----EQDSDVDEVSENIEKG------KKWSRVKKTKEELQSELNVE 354
           MDSNG +LS+E+D     ++D D  EVSEN++KG      K  SRV K KEELQ++L+ E
Sbjct: 301 MDSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKTRSRVNKGKEELQNDLSSE 360

[Close]

BLAST of Cp4.1LG05g03380 vs. ExPASy TrEMBL
Match: A0A6J1E0M1 (ribosomal L1 domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111026071 PE=4 SV=1)

HSP 1 Score: 537 bits (1384), Expect = 2.04e-188
Identity = 300/371 (80.86%), Postives = 329/371 (88.68%), Query Frame = 0


Query: 1   MASPDSDTL--SSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKG 60
           MASP S  +  SSRV ++TAEKAVESLLQWR+SKREKPQL DQEDFLYLVVTL+KIPPKG
Sbjct: 1   MASPGSVCVPPSSRVNQQTAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVTLRKIPPKG 60

Query: 61  RTNPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSD 120
           RTNPYKIPLPH L SESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSD
Sbjct: 61  RTNPYKIPLPHSLHSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSD 120

Query: 121 YRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSC 180
           YRPFEAKRKLCDSYDMFFADDRVIP+LPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSC
Sbjct: 121 YRPFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSC 180

Query: 181 SSGLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESI 240
           +S LLYLR GTCSVVKVAKTSMEVEEIV+NVIAAIDGIAEIVPKKWSNV+SFHLK+LESI
Sbjct: 181 ASALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKLLESI 240

Query: 241 ALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEK--KLGKKKGRIH 300
           ALP+YQ+VP+LK KIEAA++G E++  +E+ D+GKSPTPVKV+NKKEK  KL KKKGRIH
Sbjct: 241 ALPIYQSVPDLKFKIEAAMKG-EDKGIEEVEDSGKSPTPVKVSNKKEKEKKLSKKKGRIH 300

Query: 301 EVRYMDSNGLKLSEEEDEQDSDVDEVSENIE------------KGKKWSRVKKTKEE-LQ 354
           EVRYMDSNG +LS+E DE  SD+DE ++N++            KGKK SRV K KEE LQ
Sbjct: 301 EVRYMDSNGGELSDE-DELGSDLDEDTDNVKVSEDVIMGSDELKGKKRSRVNKGKEEDLQ 360

[Close]

BLAST of Cp4.1LG05g03380 vs. TAIR 10
Match: AT3G58660.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 342.4 bits (877), Expect = 4.6e-94
Identity = 208/382 (54.45%), Postives = 270/382 (70.68%), Query Frame = 0


Query: 10  SSRVRRETAEKAVESLLQWRS--SKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPL 69
           +SRV  +T E A+  L+ WRS  SK EKPQLL++++ +YL VTLKKIP K RTN Y+IPL
Sbjct: 21  TSRVSPKTVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPL 80

Query: 70  PHPLRS---ESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEA 129
           PHPL +   +S E+CLIIDDR KS LTKDDA KKI+SENIPI+KVIKLSKLKSDY+ FEA
Sbjct: 81  PHPLINPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEA 140

Query: 130 KRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLY 189
           KRKLCDSYDMFF D R+IP+LP ++GK FF  KKIPV L+L+H+NWK QIEK+C S + +
Sbjct: 141 KRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFF 200

Query: 190 LRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQ 249
           +R GTCSV+KV K SM++ EI  NV+A ++G+ E +P KW+ V+S HLK+ ES+ALP+YQ
Sbjct: 201 IRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLKLSESLALPIYQ 260

Query: 250 TVPELKMKIEAAVRGK---EEETNKEIADAGKSPTPVKVNNKKEKKLG---KKKGRIHEV 309
           +VP+LK+KI+A   GK   +EE   E+ +       V V+  ++   G   KKKGRIHEV
Sbjct: 261 SVPDLKLKIDAFGSGKSVVQEEKEGEVEEV------VAVDGGEKSVTGKGKKKKGRIHEV 320

Query: 310 RYMDSNGLK-LSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKK 369
           RYMDSN  + L E+E   D D +E+ E+ EK  K  R K+  E  +SE  ++K +K K K
Sbjct: 321 RYMDSNVAEVLDEDEIGGDEDNNEIVESEEKKMK-KRKKEVSEVAESEKPMKKAAKGKLK 380

Query: 370 KNGDEESSGKKVKKTKKLKEVK 380
              D E   KK  K K   +V+
Sbjct: 381 P--DVEKPMKKAAKGKSKPDVE 393

[Close]

BLAST of Cp4.1LG05g03380 vs. TAIR 10
Match: AT2G42650.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-85
Identity = 187/376 (49.73%), Postives = 261/376 (69.41%), Query Frame = 0


Query: 11  SRVRRETAEKAVESLLQW--RSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLP 70
           SRV  +T + AV++L++     S+ EKPQLL+++ F YLVV LKKIP +  TN Y+IPLP
Sbjct: 2   SRVSPKTVDDAVKALVKEGNEKSRTEKPQLLEEDGFFYLVVALKKIPQRNFTNAYRIPLP 61

Query: 71  HPL---RSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAK 130
           HPL     +S ELCLIIDDR +S LT++DA+K I+SENIPI+KV+KLSKLKSDY  FE+K
Sbjct: 62  HPLINTTEDSPELCLIIDDRPESGLTEEDAKKNIKSENIPITKVVKLSKLKSDYGSFESK 121

Query: 131 RKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYL 190
           RKLCDSYDMFF+D RVIPMLP L+GK FF+ KK PV ++L+H NWKEQIEK+C + + ++
Sbjct: 122 RKLCDSYDMFFSDRRVIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFM 181

Query: 191 RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQT 250
           R G+CS +KVAK SME ++IV NV A ++G+ +++P +W  ++S HLK+ ES++LPLYQT
Sbjct: 182 RTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKLSESLSLPLYQT 241

Query: 251 VPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMDSN- 310
           VP L++KI+    G EE  N E    G + + V  ++ K  K  KK G+IHEVRYMDSN 
Sbjct: 242 VPYLQLKIDPL--GVEEVKNGE----GLAKSDVDDSSSKSVKTKKKNGKIHEVRYMDSNV 301

Query: 311 GLKLSEEEDEQDSDVDEVSENIEKG---KKWSRVKKTKEELQSELNVEKT---SKKKKKK 370
              L ++E ++    DEV++++      KK  ++  +K  +  + ++ K+    K KK K
Sbjct: 302 SETLGDDEFDRSVGEDEVADDLNASGDKKKRKKMSSSKSAVSGKPDIVKSKNGQKSKKLK 361

Query: 371 NGDEESSGKKVKKTKK 375
              +ES G    KTK+
Sbjct: 362 KDIDESGGGFKAKTKR 371

[Close]

BLAST of Cp4.1LG05g03380 vs. TAIR 10
Match: AT1G06380.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-66
Identity = 130/242 (53.72%), Postives = 177/242 (73.14%), Query Frame = 0


Query: 11  SRVRRETAEKAVESLLQW--RSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLP 70
           S+V  +   +AV+SLL+W    SK E  + L+ + F+YL+VTLK+IP   RTNP  IPLP
Sbjct: 16  SKVDPQNVNRAVKSLLKWWDSKSKTENSESLENDGFVYLIVTLKRIPQLDRTNPLMIPLP 75

Query: 71  HPL----RSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEA 130
           HPL      +  ELCLIIDD+ K+ +TK+ A KKI++E IPI+ VIK+SKLKSD R  E 
Sbjct: 76  HPLIDLVAEDPPELCLIIDDKHKNKITKEAALKKIEAEKIPITTVIKVSKLKSDLRKLEE 135

Query: 131 KRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLY 190
           +++    ++++FA+ R++PMLP LLGK F KK K P+ +NLRH +WKEQIEK+C S L +
Sbjct: 136 EKR----FELYFAERRLMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFF 195

Query: 191 LRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQ 247
           +  GTCSVVKVAK SM   EI  NV+AA++GI ++VP +W NV+ FHLK+LES+ALP+YQ
Sbjct: 196 VGTGTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLKLLESLALPVYQ 253

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g03380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O76021	2.0e-30	29.17	Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 ...	[more]
Q5RCE6	2.0e-30	29.17	Ribosomal L1 domain-containing protein 1 OS=Pongo abelii OX=9601 GN=RSL1D1 PE=2 ...	[more]
A4FV97	5.9e-30	30.13	Ribosomal L1 domain-containing protein 1 OS=Bos taurus OX=9913 GN=RSL1D1 PE=2 SV...	[more]
Q8BVY0	1.9e-28	30.22	Ribosomal L1 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rsl1d1 PE=1...	[more]
Q9UT32	7.5e-25	32.74	Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Cp4.1LG05g03380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532538.1	4.97e-255	100.00	ribosomal L1 domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521630.1	1.50e-248	98.18	ribosomal L1 domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958691.1	2.18e-241	97.83	ribosomal L1 domain-containing protein 1-like [Cucurbita moschata]	[more]
KAG7036050.1	2.03e-240	95.78	Ribosomal L1 domain-containing protein 1, partial [Cucurbita argyrosperma subsp....	[more]
KAG6606104.1	5.82e-240	95.51	Ribosomal L1 domain-containing protein 1, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Cp4.1LG05g03380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2T1	1.05e-241	97.83	ribosomal L1 domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K7W6	5.08e-240	94.72	ribosomal L1 domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1ESQ8	2.19e-193	82.19	ribosomal L1 domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HY99	3.61e-192	82.19	ribosomal L1 domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1E0M1	2.04e-188	80.86	ribosomal L1 domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Cp4.1LG05g03380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58660.1	4.6e-94	54.45	Ribosomal protein L1p/L10e family	[more]
AT2G42650.1	1.3e-85	49.73	Ribosomal protein L1p/L10e family	[more]
AT1G06380.1	1.1e-66	53.72	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 339..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..379
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..310
None	No IPR available	PANTHER	PTHR23105:SF31	RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1	coord: 10..303
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 10..303
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 88..179 e-value: 1.1E-15 score: 59.5
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 37..237 e-value: 1.0E-59 score: 201.7
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 18..242 e-value: 2.01568E-45 score: 153.109
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 14..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g03380.1	Cp4.1LG05g03380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
cellular_component	GO:0030686	90S preribosome
molecular_function	GO:0003723	RNA binding