Cp4.1LG05g02850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g02850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionSNF1-related protein kinase regulatory subunit beta-3-like
LocationCp4.1LG05: 2167580 .. 2171709 (+)
RNA-Seq ExpressionCp4.1LG05g02850
SyntenyCp4.1LG05g02850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAGCATATGCGTGCTCCAAATAAGGAGTTGGTTCGGATTCCCTTTCGTGGATTCGTTTAGGGAGGCAGTCTCTGTGTTGGTCCCCTTTGCCTTCTTCTTCTTCTTCATTTCTTCATTGCCTCTCCTTTTCCTGTATGTATCTCTCTTTTAACCTTCCTTCTCTCTCTTCTCCAGGGGTTTTTTCTATTTCAGCTTCTTCAATTTTCCCTGCCTCGACTTTCTCTGTTGCTTCTTCAAATTTTAGATTCTTCTGTCCTAATTTTCCTGAGTTCAAACTGCCCAATGTTGTTCTTATTTGACTGAATCATTTGATGGATTGCTTATAATTTGTTGCAGGTAAGTTTGGGCTTTGGGAATTCGATTATTGTTCCATTGTCTTCTCGTTTCTGGGTTTCGGTCTGGGCTTTCTCTGGAGCTTTTTGGTGGATAGTTGAAGGGTCAAAATCTGTAATCATCCAGGTTAATCTCCTTCTTGAGCTGCAATCTTTGATTTTCTTTTCAATTTTACTTAGTAGTACGGTAGCGCCTACGAGGTTCTGTTTTTTGGCTTACCCTTTTTGTTTCTTCTTCTCTTTTGGGTTCTGGACGTCTGCAGCCGATGCCCATTTGATGTTATGTATATGCTTACTCTTATGGTGTGTTTTTCTCTGTCATAAATTGATTTTTGTCTGAAGGGTCACAATCTGATTTTGTTTATTTCTATTGCATTATCTTGGTAATCTGTACTGTTGAATTGGAAGCTGGATACAGCCAAACTGTGGCATTGAGCGGGCCTGTAATTATTGGAAGTACAGGAAGGAACAATGCTCTTGATACTCTTTTATATATATATATATATAAGTAGTACTTGACCCAATAGCACGCACGCCTATCATTGATCAAAGGAATTGAACTTTACTCTACTTCATTGTTTCTGGTTTGGTTGTTTCTTGACAATGGAATGATTTTATAAGCTATACCATTTCCTTGTGAATTTTACTATGTCTTTTTTAATGTCTGTCTGCTTAACAAACGCTACTGTTGGATGTTATATTGAAGTATTCGACAACTTGGTTCTCCAATGTTTGTTTTGTTTGTATTGTAGCTCTATTTCTAGTGGTATGGAAGAACACTAATTCCTTAGTTATTCAAATCTTAAGGGAGACGTTGAACCTAGCGAATTCCCTGTCCTTCTCCCAAGAACCCCTTGCACATCTATGAGTAACTTGCCATAGTGCCATCCCCAATCCCAAGGAAACGGAGAAACGTGAAACAACACCGACCCTTCACCGTGGTAGACTAGCAAGGCTACAAGCCATCTTCTCTCTGTAAGAAACAAAAGCCTTTAAAAACAAATTGCCCTCGCAAAACAACATCCACCATGTAAGATCCCACATTAGTTGGGGAGAAGAACGAAGCATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCAGACGCGTTTTAGAAACCTTGAGGGCAAGCTTGAAAGGGAAAACCCATCTACTAGTGGTGGACTTGGGCTGACCATATCCTTTGAAGATAATCTTTGCTATAGGTCAATAGTGTCAATCCTCATGTGAGAGCCATGCCAGGGGAAAGTTTTGACCTTTTGATTCTCGCCTTCCAAAGCGAGTAGAACATTGAGGGAGTGAAGGGTGAGATTCACACAAAAAGAGAAGGAATACAACAAATTCCTACCCTTGGGCCACGAGAGTGATTGTTATTTAGCGATTAAAGGAGATTTGTTACAAAGCACTCTGTAAGAAGATCTCTGAAGGCATCAAGATTAACATCGTCCTGTTATTCCCAAATATCCTCACGAATATTGCAAAACACTCATTCAATTGGCTGTATATATCACTCCATTTAGCGAACCAGGATAACGCCCTAGTTTCCATTCTGTCGATTTTCTATTGAACTTGAAACTAGAGAATATGATTTGACTCCTCACATTTGCTAGTCTGGAAACTCGTGGAATGTTTAAGAGATCTTTCCACTATATATTCTTGGATCTGAAGTTTAAAGTTTGATCGACATACCTGATGGAACACCAAAAGAAGCAATAATGGGATTGCTCAATAGTTTCGTCGGTGTCTCAATAAGCTCCCATTGGCTGCGTCGAGCATAACCCTGCTGCATGACTTCATATTTGAATGAAACTTGTCTTGACCTCACACCGAAGCCCATCCTCTTTACGTTTCTGATTAGTCGCGTTAGGAGAATGAAATGTCATATTGGTTAACATTCATGGCAGGGTTGAAGTGTATCCTTGATTGATTTGAAGGTAGCTAGACCAGAACTTCAAGGTTGTACAATATTATACAAAGTTGTATGTAAATACTCACTGAATTGTGTTCATTTCAGGTTTCCAGTTTATAATTTTCTACAATTGATGAGTTTCTTCTGTTAGCTTGGAAGTTTTCACTTCAACATGAACAACCCTTTCCCTGAAGATAGTGTAAGCTGCTAATCCTAGTTGTGTTCATCTTCTAATTACACCAAATGGGGTTTAAAACATGAATCCTTTCTACAGGATCAGACCACCGTAGTCGGTTTCGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGACGACGCACGTGATCCACCACCCGTCCCGCCTCATTTGCAGCACACCTTACTCAGTCACCCAGCGGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCAGTTCATAGAAGAGGAAGTAGCGCGCCTTAGTTATGCATATACATCGAAATCATTCAATAGAACTAGTCCATCGGTAGAAATTGTTTATGAAGTTAGAGCAGAAGCATTTAACTTTTTCACCAAGTAAATGATTGTTGATGGGTAGATATTGTTCTTGCATTTTTTGAACTGTTAAAAGATGCAAATACTTCTTATCTTCTTAGCTCGAAGTTTAGACTTTAGAGTTCGGTTTGTAGGACGTGTTTATTAATTTAGCCTTTGGATTACATTATATTCGAGGGTTCAATCTAATGACCCTATTAACACAACTTTACCTATCGCTCACTCGTGAAAGAGGAGGAAAGACAATTTCAGGCCTCGGGGCCGAAATGCTCTAATTTTAGTAGCCATTGGACATTGATTTGTGCATCTTTTTGTCCCCAAATTTGAATGAAATGGCTGCGTTGAAATCTTTTATGAATTGGTTCATAGATTGATGGGATGAACCATTAGGCTTCACTGCATTTTCCAATGCCTTCTTGACTTCTCCAACGGCAGCTCGATATTGACTCCCAGATTTAGCATCCATCAGATGGTTAATCTTCTCCGAAACCCTTTCCTTAGATATCTGCCGTCCATTTCTCAGATTAATCCCCACCTTCCAATCTTCCACCACCAGTTTCCGATTGGTGAACTGATCCGTAAGCAAAGGAAAACACAACAGCGGAACATTACACCAAATGCTTTCCAGAATTGAATTCCATCCACAGTGAGTTAAGAACCCTCCGATCGCCGGATGGGACAGCACTTGTCTCTGATGACACCATGGCACAATCATCGAACGGTCAGAAACCTCCTTCCGGTAACCATCCGGCAATGGATCGGTGTCTGTTGAGCTGACAATATCCGGTCGGAGAACCCATATGAAATGGACCCCACTCATCGAAAGCCCATGGGCTATTTCGGTGAGGTCCGTTTTGGTGACGTGGGCGTAGCTTCCACACGAGACGTAGAGAACCGAGCCGTGGGGTTTGGAGTTGAGCCAGTGGGTACAGTCGGACTCGGGCCAGAGGCTGGTTGCGACGGAGGTTTTGGTGTAGCCAGGTGGGAAAATAGGTCCGATGGTGTAGAACCGGGTTTCGGCTTGTAGCGCTGAAACGGTGTCGTTCTCGAGCTCATGTACGGAGTTGCATATCACGAAATCTGCAGCTCTAACATCCTCAAACGCTGCGAAAATGATTCGGTGGCAAACCGACGTCGTATCTGTGTCTTGTAAATACGACATCATGTCTTGTGGATTGATTGCGCGTACTCCTGGTATGTAATCAATGGCGTCCTC

mRNA sequence

AAGAGCATATGCGTGCTCCAAATAAGGAGTTGGTTCGGATTCCCTTTCGTGGATTCGTTTAGGGAGGCAGTCTCTGTGTTGGTCCCCTTTGCCTTCTTCTTCTTCTTCATTTCTTCATTGCCTCTCCTTTTCCTGTAAGTTTGGGCTTTGGGAATTCGATTATTGTTCCATTGTCTTCTCGTTTCTGGGTTTCGGTCTGGGCTTTCTCTGGAGCTTTTTGGTGGATAGTTGAAGGGTCAAAATCTGTAATCATCCAGGTTTCCAGTTTATAATTTTCTACAATTGATGAGTTTCTTCTGTTAGCTTGGAAGTTTTCACTTCAACATGAACAACCCTTTCCCTGAAGATAGTGATCAGACCACCGTAGTCGGTTTCGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGACGACGCACGTGATCCACCACCCGTCCCGCCTCATTTGCAGCACACCTTACTCAGTCACCCAGCGGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCAGTTCATAGAAGAGGAAGTAGCGCGCCTTAGTTATGCATATACATCGAAATCATTCAATAGAACTAGTCCATCGGTAGAAATTGTTTATGAAGTTAGAGCAGAAGCATTTAACTTTTTCACCAAGTAAATGATTGTTGATGGGTAGATATTGTTCTTGCATTTTTTGAACTGTTAAAAGATGCAAATACTTCTTATCTTCTTAGCTCGAAGTTTAGACTTTAGAGTTCGGTTTGTAGGACGTGTTTATTAATTTAGCCTTTGGATTACATTATATTCGAGGGTTCAATCTAATGACCCTATTAACACAACTTTACCTATCGCTCACTCGTGAAAGAGGAGGAAAGACAATTTCAGGCCTCGGGGCCGAAATGCTCTAATTTTAGTAGCCATTGGACATTGATTTGTGCATCTTTTTGTCCCCAAATTTGAATGAAATGGCTGCGTTGAAATCTTTTATGAATTGGTTCATAGATTGATGGGATGAACCATTAGGCTTCACTGCATTTTCCAATGCCTTCTTGACTTCTCCAACGGCAGCTCGATATTGACTCCCAGATTTAGCATCCATCAGATGGTTAATCTTCTCCGAAACCCTTTCCTTAGATATCTGCCGTCCATTTCTCAGATTAATCCCCACCTTCCAATCTTCCACCACCAGTTTCCGATTGGTGAACTGATCCGTAAGCAAAGGAAAACACAACAGCGGAACATTACACCAAATGCTTTCCAGAATTGAATTCCATCCACAGTGAGTTAAGAACCCTCCGATCGCCGGATGGGACAGCACTTGTCTCTGATGACACCATGGCACAATCATCGAACGGTCAGAAACCTCCTTCCGGTAACCATCCGGCAATGGATCGGTGTCTGTTGAGCTGACAATATCCGGTCGGAGAACCCATATGAAATGGACCCCACTCATCGAAAGCCCATGGGCTATTTCGGTGAGGTCCGTTTTGGTGACGTGGGCGTAGCTTCCACACGAGACGTAGAGAACCGAGCCGTGGGGTTTGGAGTTGAGCCAGTGGGTACAGTCGGACTCGGGCCAGAGGCTGGTTGCGACGGAGGTTTTGGTGTAGCCAGGTGGGAAAATAGGTCCGATGGTGTAGAACCGGGTTTCGGCTTGTAGCGCTGAAACGGTGTCGTTCTCGAGCTCATGTACGGAGTTGCATATCACGAAATCTGCAGCTCTAACATCCTCAAACGCTGCGAAAATGATTCGGTGGCAAACCGACGTCGTATCTGTGTCTTGTAAATACGACATCATGTCTTGTGGATTGATTGCGCGTACTCCTGGTATGTAATCAATGGCGTCCTC

Coding sequence (CDS)

ATGAACAACCCTTTCCCTGAAGATAGTGATCAGACCACCGTAGTCGGTTTCGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGACGACGCACGTGATCCACCACCCGTCCCGCCTCATTTGCAGCACACCTTACTCAGTCACCCAGCGGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCAGTTCATAGAAGAGGAAGTAGCGCGCCTTAG

Protein sequence

MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP
Homology
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BLAST of Cp4.1LG05g02850 vs. ExPASy Swiss-Prot
Match: Q9ZUU8 (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-37
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MN+  P+D + TTVVGFEVP SP S+YNNVY  +ED+ RDPP VPPHLQH+LL +    +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNVVLNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy Swiss-Prot
Match: Q9SCY5 (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-24
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 185 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 244

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 245 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy Swiss-Prot
Match: Q84VQ1 (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           ++N  PE+ +  ++V FE P SPD +Y      +ED A++P  VPP L  TLL      +
Sbjct: 178 VHNFVPENPE--SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTE 237

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
                  PQ+VVLNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 238 ETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy Swiss-Prot
Match: Q9QZH4 (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 35/95 (36.84%), Postives = 49/95 (51.58%), Query Frame = 0 

Query: 18  EVPKSPDSTYNN--VYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAG-GTLPLPQNVVLN 77
           ++  SP   Y        SE+  + PP +PPHL   +L+           LP P +V+LN
Sbjct: 179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+     T  SV+ L  THR+  KYVT +LYKP+
Sbjct: 239 HLYA--LSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy Swiss-Prot
Match: Q9Y478 (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-08
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 18  EVPKSPDSTYNN--VYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAG-GTLPLPQNVVLN 77
           E+  SP   Y+        E+  R PP +PPHL   +L+   G       LP P +V+LN
Sbjct: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+  + +    V+ L  THR+  KYVT +LYKP+
Sbjct: 238 HLYALSIKD--GVMVLSATHRYKKKYVTTLLYKPI 270

[Close]
BLAST of Cp4.1LG05g02850 vs. NCBI nr
Match: XP_022996167.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >XP_022996168.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >XP_022996169.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima])

HSP 1 Score: 246 bits (627), Expect = 3.51e-82
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP 117
           AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP 117

[Close]
BLAST of Cp4.1LG05g02850 vs. NCBI nr
Match: XP_022958406.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958407.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958408.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >KAG6606042.1 SNF1-related protein kinase regulatory subunit beta-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035994.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242 bits (617), Expect = 1.18e-80
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPA RD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP 117
           AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS P
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSVP 117

[Close]
BLAST of Cp4.1LG05g02850 vs. NCBI nr
Match: XP_004145755.1 (SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_008465360.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_008465361.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_011657018.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_016903370.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_031742408.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >KAA0035235.1 SNF1-related protein kinase regulatory subunit beta-3 isoform X2 [Cucumis melo var. makuwa] >KGN46863.1 hypothetical protein Csa_020718 [Cucumis sativus] >TYK22390.1 SNF1-related protein kinase regulatory subunit beta-3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 4.81e-71
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNN+Y+GSED+ARDPP VPPHLQHTLLS PA RD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115
           AG TLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]
BLAST of Cp4.1LG05g02850 vs. NCBI nr
Match: XP_022140750.1 (SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_022140751.1 SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia])

HSP 1 Score: 216 bits (551), Expect = 1.38e-70
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNNP+ EDSDQTTVVGFEVP SPDSTYNN+YLGSED+ARDPP  PPHLQHTLLSHPA RD
Sbjct: 1   MNNPYSEDSDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115
           AGGTLPLP NV+LNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPVHRRGSS 115

[Close]
BLAST of Cp4.1LG05g02850 vs. NCBI nr
Match: XP_038902942.1 (SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida] >XP_038902943.1 SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida])

HSP 1 Score: 214 bits (545), Expect = 1.13e-69
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNN   EDSDQ TVVGFEVPKSPDSTYNNVY+GSED+ARDPP VPPHLQHTLLS PA RD
Sbjct: 1   MNNLCSEDSDQNTVVGFEVPKSPDSTYNNVYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115
           AG TLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy TrEMBL
Match: A0A6J1KA31 (SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita maxima OX=3661 GN=LOC111491475 PE=3 SV=1)

HSP 1 Score: 246 bits (627), Expect = 1.70e-82
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP 117
           AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP 117

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy TrEMBL
Match: A0A6J1H1Z8 (SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita moschata OX=3662 GN=LOC111459640 PE=3 SV=1)

HSP 1 Score: 242 bits (617), Expect = 5.70e-81
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPA RD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP 117
           AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS P
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSVP 117

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy TrEMBL
Match: A0A1S3CP39 (SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN=LOC103502997 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.33e-71
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNN+Y+GSED+ARDPP VPPHLQHTLLS PA RD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115
           AG TLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy TrEMBL
Match: A0A5A7T1A3 (SNF1-related protein kinase regulatory subunit beta-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00140 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.33e-71
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNN+Y+GSED+ARDPP VPPHLQHTLLS PA RD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115
           AG TLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]
BLAST of Cp4.1LG05g02850 vs. ExPASy TrEMBL
Match: A0A0A0KBG3 (AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.33e-71
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNN+Y+GSED+ARDPP VPPHLQHTLLS PA RD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115
           AG TLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]
BLAST of Cp4.1LG05g02850 vs. TAIR 10
Match: AT2G28060.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-38
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MN+  P+D + TTVVGFEVP SP S+YNNVY  +ED+ RDPP VPPHLQH+LL +    +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNVVLNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]
BLAST of Cp4.1LG05g02850 vs. TAIR 10
Match: AT4G16360.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 155 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 214

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 215 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 259

[Close]
BLAST of Cp4.1LG05g02850 vs. TAIR 10
Match: AT4G16360.2 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 154 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 213

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 214 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 258

[Close]
BLAST of Cp4.1LG05g02850 vs. TAIR 10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 157 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 216

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 217 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261

[Close]
BLAST of Cp4.1LG05g02850 vs. TAIR 10
Match: AT5G21170.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-21
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           ++N  PE+ +  ++V FE P SPD +Y      +ED A++P  VPP L  TLL      +
Sbjct: 178 VHNFVPENPE--SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTE 237

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
                  PQ+VVLNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 238 ETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g02850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZUU85.9e-3764.35SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX... [more]
Q9SCY51.1e-2454.21SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX... [more]
Q84VQ12.9e-2048.65SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX... [more]
Q9QZH42.0e-0836.845'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=... [more]
Q9Y4785.7e-0836.845'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1... [more]
BLAST of Cp4.1LG05g02850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022996167.13.51e-82100.00SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >X... [more]
XP_022958406.11.18e-8098.29SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] ... [more]
XP_004145755.14.81e-7190.43SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_0084... [more]
XP_022140750.11.38e-7088.70SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_... [more]
XP_038902942.11.13e-6990.43SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida] >XP_03... [more]
BLAST of Cp4.1LG05g02850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KA311.70e-82100.00SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita maxima O... [more]
A0A6J1H1Z85.70e-8198.29SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita moschata... [more]
A0A1S3CP392.33e-7190.43SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN... [more]
A0A5A7T1A32.33e-7190.43SNF1-related protein kinase regulatory subunit beta-3 isoform X2 OS=Cucumis melo... [more]
A0A0A0KBG32.33e-7190.43AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=3... [more]
BLAST of Cp4.1LG05g02850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G28060.14.2e-3864.355'-AMP-activated protein kinase beta-2 subunit protein [more]
AT4G16360.18.1e-2654.215'-AMP-activated protein kinase beta-2 subunit protein [more]
AT4G16360.28.1e-2654.215'-AMP-activated protein kinase beta-2 subunit protein [more]
AT4G16360.38.1e-2654.215'-AMP-activated protein kinase beta-2 subunit protein [more]
AT5G21170.12.1e-2148.655'-AMP-activated protein kinase beta-2 subunit protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006828Association with the SNF1 complex (ASC) domainSMARTSM01010AMPKBI_2coord: 20..109
e-value: 8.8E-29
score: 111.6
IPR006828Association with the SNF1 complex (ASC) domainPFAMPF04739AMPKBIcoord: 39..108
e-value: 8.7E-21
score: 74.0
NoneNo IPR availableGENE3D6.20.250.60coord: 13..109
e-value: 7.5E-24
score: 85.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
IPR030067SNF1-related protein kinase regulatory subunit beta-3PANTHERPTHR46316:SF5SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3coord: 1..115
IPR043554SNF1-related protein kinase regulatory subunit betaPANTHERPTHR46316SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1coord: 1..115
IPR037256ASC domain superfamilySUPERFAMILY160219AMPKBI-likecoord: 12..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g02850.1Cp4.1LG05g02850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043562 cellular response to nitrogen levels
biological_process GO:0016310 phosphorylation
biological_process GO:0009744 response to sucrose
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016301 kinase activity
molecular_function GO:0005515 protein binding