Cp4.1LG05g02050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g02050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Protein lsd1
Location	Cp4.1LG05: 1022057 .. 1023916 (-)
RNA-Seq Expression	Cp4.1LG05g02050
Synteny	Cp4.1LG05g02050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCAGTTCCTCTTGCGCCATATCCAACTCCTCCGCCGCCTTATACTCCACCTGCTAATAGTACTCACTCTCTTCATCTTAACTACATTCTAGTGTGCGTGCTCACAAAATGTGTTGATTGCCCATTTTCCATCTTTCTGGTTGGAAAATCTACTGATTTTTCTTTGCTTTCTCTCCCTCCTTTTGTATTTGTTCATCATCCATTTGAGCTTTGTTGTACACTTCACTTTCATAGCCAAATGGGTCTGCTCTTCTTGGCTTAGAATTTGGTTCTGTGAGAAATTCTGCAAGAAAGACAAGTTTTTTAAATTAGATTGAATCTGCTGTTCATAGATTAGTGTTTTGTTATTGATACTCAACTGATGTTTGAAATGTGCATTTTGTTGGTAATCAGCCGCACAGAGCCAGCTTGTGTGTTCCGGATGTAGAAACCTTTTGCTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACCGCTGTTCCGCCGCCCGGTATACAGTTCTTCCTCCTCTTCTTTACTGTCTCCGCTTCTTAGTTTCTATTGTAAGATCTCACATCAGTTGGGGAGGAGAACGAAACATTCTTTATAAGAATAATACGGCGTTCACAAATTATGTTTGGGAATTTTGTTATTTTTCTTTTGAAGAAAGATCGGAAGTTTTAGTTCTTTTATGTGTAAAACAGGCACAGAAATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATTCATGGTGCTACCAGCGTGCAATGTTCTTGTTGTCACACCGTCAACTTAGCTTTGGAAGGTATGGAAATCTAACTATTTTAGAGAGTGATTCTTGTCATCTTGAACAAATCCTGCTAACTTCACGAAACTTGAATCATAATCACGCTAGACATCTCGAACCAGTCTTGGTAGTTTGCTGACTAGAACCATTCTGAAATGGCTTAAGTCCATTGCTAACCGATATTGTCCTTTTTGAGTTTTCTCATTTGAGGTTCACCTCAAGGTTTTTAAAACGCGTCTGAATAAGGAGAGATTTTCACACCCTTATAAAGAATGATTCGTTTTCCTTCCCAACTAATGTGGGATCTCACACGTTCCTAGCTAATTCCCATCACGAATAGCAGCATAATCGTGTGAATTGAGCGAGAAATATACACTGTTACAGCGAATCAGGTGGCGCATGTGAGCTGTGGGAACTGCCGGATGCTACTGATGTATCAGTATGGAGCACGTTCCGTGAAATGTGCAGTATGCAACTTTGTGACATCAGTTGGGGTCAGTATAAAGCTTCCATTTTGTTCAATCTTTCCACAGTCAATTCTTACTAAGCCACACATTATTGATTATGTCTTTCTTTGTAGATGTCGACAAGCGCAGTCGATCAAAAAGCCTAACAGCTAAAGTTATGGTAAACATGGTTGTCCCCGACTCGACAACTGCGGCTTTGCATCATTCGTATCGCCCTCCGCCATGTTTGATCAACTCGACAAGCGGAGGTTCCTCTCATATTCACTTGTATAGAGCTGTATTTCTGCGCGTGAACATTAAATGTCGTTTTTTTTTCTTCATCTTCACAGTGCTTGAATGATATTTGCATGGTTTAAGTAGTTTTGGGCAACATTTTATACTGTGATGAGTGTAATATAAGTGATGGATAAAGATGGAGTTTGGTTTCTTTGTGAACTGCAGAAGAGAGTCAATATGAGATATCAGCTTTTTGACTTGTCGACTGTTTGCTTCATTATCAGTACATTATGCTATTCAGTCAATTCAAATTCCAACTGACCTGAGCCATGTGAGTTCTGCTGAGTTGGGACCAAGAGAAAGAGAGAGAGAATGA

mRNA sequence

ATGCCACCAGTTCCTCTTGCGCCATATCCAACTCCTCCGCCGCCTTATACTCCACCTGCTAATAGTACTCACTCTCTTCATCTTAACTACATTCTAGTGCACAGAAATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATTCATGGTGCTACCAGCGTGCAATGTTCTTGTTGTCACACCGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCATGTGAGCTGTGGGAACTGCCGGATGCTACTGATGTATCAGTATGGAGCACGTTCCGTGAAATGTGCAGTATGCAACTTTGTGACATCAGTTGGGATGTCGACAAGCGCAGTCGATCAAAAAGCCTAACAGCTAAAGTTATGGTAAACATGGTTGTCCCCGACTCGACAACTGCGGCTTTGCATCATTCGTATCGCCCTCCGCCATGTTTGATCAACTCGACAAGCGGAGTACATTATGCTATTCAGTCAATTCAAATTCCAACTGACCTGAGCCATGTGAGTTCTGCTGAGTTGGGACCAAGAGAAAGAGAGAGAGAATGA

Coding sequence (CDS)

ATGCCACCAGTTCCTCTTGCGCCATATCCAACTCCTCCGCCGCCTTATACTCCACCTGCTAATAGTACTCACTCTCTTCATCTTAACTACATTCTAGTGCACAGAAATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATTCATGGTGCTACCAGCGTGCAATGTTCTTGTTGTCACACCGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCATGTGAGCTGTGGGAACTGCCGGATGCTACTGATGTATCAGTATGGAGCACGTTCCGTGAAATGTGCAGTATGCAACTTTGTGACATCAGTTGGGATGTCGACAAGCGCAGTCGATCAAAAAGCCTAACAGCTAAAGTTATGGTAAACATGGTTGTCCCCGACTCGACAACTGCGGCTTTGCATCATTCGTATCGCCCTCCGCCATGTTTGATCAACTCGACAAGCGGAGTACATTATGCTATTCAGTCAATTCAAATTCCAACTGACCTGAGCCATGTGAGTTCTGCTGAGTTGGGACCAAGAGAAAGAGAGAGAGAATGA

Protein sequence

MPPVPLAPYPTPPPPYTPPANSTHSLHLNYILVHRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATDVSVWSTFREMCSMQLCDISWDVDKRSRSKSLTAKVMVNMVVPDSTTAALHHSYRPPPCLINSTSGVHYAIQSIQIPTDLSHVSSAELGPRERERE

Homology

[Close]

BLAST of Cp4.1LG05g02050 vs. NCBI nr
Match: XP_040871109.1 (uncharacterized protein LOC100306356 isoform X2 [Glycine max])

HSP 1 Score: 120 bits (301), Expect = 3.84e-31
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 3   PVPLAPYPTPPPPYTPPANSTHSLHL----NYILV------------------------- 62
           PVPLAPYPTPP PYTPPAN   S  +      +LV                         
Sbjct: 2   PVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPETL 61

Query: 63  ----HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATDVS 111
               HRNG   +WRLPY +HVH    + AMFLLSH Q SFGS+SGG C+LW+L DAT V 
Sbjct: 62  VCDRHRNGPVSMWRLPYFTHVHPGRDKCAMFLLSHCQSSFGSKSGGTCQLWQLQDATRVP 121

[Close]

BLAST of Cp4.1LG05g02050 vs. NCBI nr
Match: XP_040871108.1 (uncharacterized protein LOC100306356 isoform X1 [Glycine max])

HSP 1 Score: 119 bits (298), Expect = 1.19e-30
Identity = 69/145 (47.59%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 3   PVPLAPYPTPPPPYTPPANSTHSLHL----NYILV------------------------- 62
           PVPLAPYPTPP PYTPPAN   S  +      +LV                         
Sbjct: 2   PVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPDKS 61

Query: 63  -------HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDAT 111
                  HRNG   +WRLPY +HVH    + AMFLLSH Q SFGS+SGG C+LW+L DAT
Sbjct: 62  ETLVCDRHRNGPVSMWRLPYFTHVHPGRDKCAMFLLSHCQSSFGSKSGGTCQLWQLQDAT 121

[Close]

BLAST of Cp4.1LG05g02050 vs. NCBI nr
Match: KAF9868101.1 (hypothetical protein H0E87_026726 [Populus deltoides])

HSP 1 Score: 110 bits (275), Expect = 2.07e-27
Identity = 61/116 (52.59%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 3   PVPLAPYPTPPPPYTPPA-----------NSTHSLHLNYILVHRNGTTGVWRLPYSSHVH 62
           PVPLAPYPTPP PY PPA           N T  + L YI  HRNG  G+ RLP+ + VH
Sbjct: 2   PVPLAPYPTPPAPYAPPAPAPAPPPPPPANVTLPVQL-YINRHRNGPVGLRRLPHLTDVH 61

Query: 63  SWCYQRAMFLLSHRQLSFGSESGGACELWELPDATDVSVWSTFREMCSMQLCDISW 107
            W  +RA+FLLS+ Q S G +S G  +LWEL DA DV +WST  EMC +Q C  SW
Sbjct: 62  PWSNERAVFLLSYSQSSLGGKSSGTRQLWELQDAVDVPIWSTVCEMCCLQFCHTSW 116

[Close]

BLAST of Cp4.1LG05g02050 vs. NCBI nr
Match: MBA0656960.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 106 bits (265), Expect = 9.28e-26
Identity = 63/140 (45.00%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 3   PVPLAPYPTPPPPYTPPANS------------THSLHLNYILV----------------- 62
           PVPLAPYPTPP PYTPPA +            T    L+  +                  
Sbjct: 2   PVPLAPYPTPPAPYTPPAANVAKPMLTRCSKPTCVFRLSKFIALSSWSNLCVLCCLQCSN 61

Query: 63  ------HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATD 107
                 HRNGT G+ RL Y  +VH    +R+MF+LSH Q   GS+SGG C+LWEL D T+
Sbjct: 62  SSAASRHRNGTVGLRRLSYLINVHPRSNKRSMFVLSHCQSGLGSKSGGTCKLWELQDVTN 121

[Close]

BLAST of Cp4.1LG05g02050 vs. NCBI nr
Match: MBA0718570.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 105 bits (262), Expect = 2.62e-25
Identity = 63/140 (45.00%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 3   PVPLAPYPTPPPPYTPPA--------------------------NSTHSLHLNYILV--- 62
           PVPLAPYPTPP PYTPPA                          +S  +L +   L    
Sbjct: 2   PVPLAPYPTPPAPYTPPAANVAKPMLTRCSKPTCVFRLSKFIALSSWSNLRVLCCLQCSN 61

Query: 63  ------HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATD 107
                 HRNGT G+ RL Y  +VH    +R+MF+LSH Q   GS+SGG C+LWEL D T+
Sbjct: 62  SSAASRHRNGTVGLRRLSYLINVHPRSNKRSMFVLSHCQSGLGSKSGGTCKLWELQDVTN 121

[Close]

BLAST of Cp4.1LG05g02050 vs. ExPASy TrEMBL
Match: A0A7J8V2Y8 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_009278 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 4.49e-26
Identity = 63/140 (45.00%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 3   PVPLAPYPTPPPPYTPPANS------------THSLHLNYILV----------------- 62
           PVPLAPYPTPP PYTPPA +            T    L+  +                  
Sbjct: 2   PVPLAPYPTPPAPYTPPAANVAKPMLTRCSKPTCVFRLSKFIALSSWSNLCVLCCLQCSN 61

Query: 63  ------HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATD 107
                 HRNGT G+ RL Y  +VH    +R+MF+LSH Q   GS+SGG C+LWEL D T+
Sbjct: 62  SSAASRHRNGTVGLRRLSYLINVHPRSNKRSMFVLSHCQSGLGSKSGGTCKLWELQDVTN 121

[Close]

BLAST of Cp4.1LG05g02050 vs. ExPASy TrEMBL
Match: A0A7J9A3N7 (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_006313 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.27e-25
Identity = 63/140 (45.00%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 3   PVPLAPYPTPPPPYTPPA--------------------------NSTHSLHLNYILV--- 62
           PVPLAPYPTPP PYTPPA                          +S  +L +   L    
Sbjct: 2   PVPLAPYPTPPAPYTPPAANVAKPMLTRCSKPTCVFRLSKFIALSSWSNLRVLCCLQCSN 61

Query: 63  ------HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATD 107
                 HRNGT G+ RL Y  +VH    +R+MF+LSH Q   GS+SGG C+LWEL D T+
Sbjct: 62  SSAASRHRNGTVGLRRLSYLINVHPRSNKRSMFVLSHCQSGLGSKSGGTCKLWELQDVTN 121

[Close]

BLAST of Cp4.1LG05g02050 vs. ExPASy TrEMBL
Match: A0A6A3CUI2 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002847pilonHSYRG00018 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 5.80e-25
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 34  HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATDVSVWST 93
           H NG  G+ RLPY ++V+ W  QR+MF+L H Q   GS+SGG CELWEL + T+V VWS 
Sbjct: 33  HGNGPVGLRRLPYLTNVYPWSNQRSMFVLFHCQSGLGSKSGGTCELWELQNVTNVPVWSK 92

Query: 94  FREMCSMQLCDISWDVDKRSRSK--SLTAKVMVNMVVPDSTTAALHHSYRPP 143
             +MCS+Q CDISW + KR R++   L   +   ++V        H+ Y  P
Sbjct: 93  ICKMCSLQFCDISWGLGKRCRTEVQQLKGYITPKLIVRSYNFGFAHYKYISP 144

[Close]

BLAST of Cp4.1LG05g02050 vs. ExPASy TrEMBL
Match: A0A2P2KP38 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 5.92e-24
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 34  HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATDVSVWST 93
           HRNG+ G+WRLP+ ++VH    +  MFLLSH Q S GS+S G C+LWEL DATDV VWST
Sbjct: 14  HRNGSVGLWRLPHFTNVHPGSNKCTMFLLSHCQSSLGSKSSGVCQLWELQDATDVPVWST 73

Query: 94  FREMCSMQLCDISWDVDKRSRSK 116
             E+C +Q C  +W ++K  R++
Sbjct: 74  LCEVCCLQFCHFNWGLNKHHRTE 96

[Close]

BLAST of Cp4.1LG05g02050 vs. ExPASy TrEMBL
Match: A0A2P2KP55 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 9.20e-24
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 34  HRNGTTGVWRLPYSSHVHSWCYQRAMFLLSHRQLSFGSESGGACELWELPDATDVSVWST 93
           HRNG+ G+WRLP+ ++VH    +  MFLLSH Q S GS+S G C+LWEL DATDV VWST
Sbjct: 30  HRNGSVGLWRLPHFTNVHPGSNKCTMFLLSHCQSSLGSKSSGVCQLWELQDATDVPVWST 89

Query: 94  FREMCSMQLCDISWDVDKRSRSK 116
             E+C +Q C  +W ++K  R++
Sbjct: 90  LCEVCCLQFCHFNWGLNKHHRTE 112

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g02050 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g02050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_040871109.1	3.84e-31	48.59	uncharacterized protein LOC100306356 isoform X2 [Glycine max]	[more]
XP_040871108.1	1.19e-30	47.59	uncharacterized protein LOC100306356 isoform X1 [Glycine max]	[more]
KAF9868101.1	2.07e-27	52.59	hypothetical protein H0E87_026726 [Populus deltoides]	[more]
MBA0656960.1	9.28e-26	45.00	hypothetical protein [Gossypium klotzschianum]	[more]
MBA0718570.1	2.62e-25	45.00	hypothetical protein [Gossypium laxum]	[more]

BLAST of Cp4.1LG05g02050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8V2Y8	4.49e-26	45.00	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_009278 PE=4...	[more]
A0A7J9A3N7	1.27e-25	45.00	Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_006313 PE=4 SV=1	[more]
A0A6A3CUI2	5.80e-25	44.64	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002847pilon...	[more]
A0A2P2KP38	5.92e-24	53.01	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A2P2KP55	9.20e-24	53.01	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g02050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g02050.1	Cp4.1LG05g02050.1	mRNA