Cp4.1LG05g02040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g02040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ras-related protein RABH1b
Location	Cp4.1LG05: 1115092 .. 1117946 (-)
RNA-Seq Expression	Cp4.1LG05g02040
Synteny	Cp4.1LG05g02040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCCTCGATGAAGATGCGAAGCCCAGGTTCCTCTTCCACTCTCGCGCCAATCAATCTTCGGCGCCTGAGCTCCATATCGAACCGCAATCCTGCAAGCTCTTCTGCTCAATCACCGTCGTACTATCTTCCATTTTACTCATTCTCTCAATTTTGTTCGTCCAGTTCGAACCATTCAGATCTATTCTTATCTGGATGTCTCTCTCGCTTTTACTCGGCCCATTCGCCCCCATATCCATCACCGGCGGCGACATTCGAGTCGGTCGAGGTCCGATTCTCGAAATTCCAGACGAAGAATCCGAAATGGAGGACGATTCAAAGAAGAAACCAGTTCAAAAATAAAATTCTAAAAAATATTTGAACTGGTATGCCGCTCCTTTATGTAGAGGCGAGAGGCTCATTTTCTGCGGGGCAGCCACCATATTGGATGCAATGCGGCTTCTCTTCTGCTTAACCGATGTCTAAATAAAAGCTCCTATAAAACTCATCCCCATCAAAAACAATTTGCTGAACAAATGGGGAGTCATTCCATTAGAGTTTCGTGACTCCTTTTTGAGCCTCTGTCTCGCTAATATTTTCTGTCATCATTCTTTCTTTCTGAACATGGCCAATTGGAGAGCTATTATTTTTTAAAGAAATTTTCCTAGGCCTGGCTTTGTGCCTTTCATATCTACTTCCACTCAAGGTTGAAAGGAGATACAGAAAAGCTCTTGAAGAATTAACAAATACAGACTTTGGGCAACTAGACAAGGAACTAATTAGCTTCTTTAGGAACTTCATCTAGAAGCTAGGTAACAAGCAATATTTAATAGATCTCTGCCATCTCTACATTTTCCTTCAAATAAAAAATAATGTTACAGTTGGCCTAATTAAATTTGTCCTTTGTCTGATGAGCATGCACATCTTGTAAATTAATGCATTACTTTTGACTTCTGTGCACTTGTATTTATGATACTTATAATTCCATTTAATTGGAGTGATCAACTGTCTTTAATTGTCTTTCCCAGAAATATGGGTTTTGCTGCACATTTAAATTTTTTTTTATTACTTTGTTTCTCAGGGACACTGCTGGACAGGAAAGATTCAGAAGTTTAATACCAAGCTATATCAGGGACTCGTCTGTCGCGGTCATCGTTTATGATGTTGCAAGTATGGATTCTAAAACTTTCTATAAATGAGAATAATTAAGCAAAGAAAACCACTTGAATATGTGTGTTCTGTCCATGTGGATTTGTCATTTGATGTTGTGGTAAAATGAAATGATTTATAAACTCCTGGGTGGATCTGGGTTCTGATATCTGAGCTTTTTAGGTTCTTAAAATCATATAGTTACTTGATTACATGCTGCGGAGTAATTTCTGTGCCATGATATGCTCAAAGGATTGTTTTTTACTGTTTTCACCCTGTTGCTACTTAGGCCGGCAGACTTTCGTAAACACTTCGAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTTATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGTAATAGTTGGCTATGGATTTTATTTCATATTAAATGTTCAAATCTTTCCACTATATTGTTCAACTCAAATGTTCATGTCAAGTCTTTCCTCTATATTGTTCAACTCAAATGTTCATGTTTAGTCTTTCTTCTGTTGTAATGTCGAGGCGTTCGTGTATCTCTATCGTATGGTCTTATGTTTATATTGTGTTGCGTGGGGCGAAAAAGTACATAGTGTTTATATAGCACANTGTTCGTGTATCTCTATCGTATGGTCTTATGTTTATATTGTGTTGTGTGGGGCGAAAAAGTACATAGTGTTTATATAGCACAGGATATTATGGTCCCCCGCTGTTCTTGCTCCTATATTTCCTAAGGGAAAATAGGTTTTAATTTTAATAAGCCTTTTCTTTTACATTCCCAAGAAGTTTAGTTTTGTTTGGCATATTGTTTCACCATCTTCTCCTACGCATGATTCACAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCAAAAGCTGGATTCAATATCAAGGTAAACCAATATGAAAATGTATCCATACTCGGATACCTCCAGATTGAATGTAATACCAATCGATGCTTCTCCTCTGCCGTATACTCGGGAACTTGAAGCAAATACTTATAATTCCTTCATTCTTGATAAAGATTTAAATTGAACTTTAGAAAGGCCGCTATTTTCTTAGTATCTGCTTATGGTCTTTCTAATAGCCATATTGCCAACCCTATAATTTATGCAGGCACTATTCCGAAAAATTGCTGCAGCATTGCCCGGAATGGAAACTCTCTCTTCGACAAAGCAAGAGGACATGGTTGATGTCAACCTGAAGTCATCAGGCAGTGGTGCTGCACAATCCCAGCCGCAGTCCGGTGGATGCGCCTGCTAGTGAGGCTCGACATTGAGGAATCGCTCGCTCTTTCTTGCCTTTTGTTTTCAACACCTCAATCTTCTAGAACTGTGGCATTCAGGTACAAGGTGTGGTTATATCTATCAATGCCTGCTTGAGCAATTCGTAAAATGTAATAGGTGGCAAGAGTAGGCGGCTGTTATTTTATGGAGTAATTTGATGTATTGGTGGAGTCATTATTTGGGTTTTGGGATTTGGGAGGTGTAAAAATTAGAAAATTTATCTGTCGGACTCGATTACAGAATTTTGCTTGTCTTGTAAGTTGTAATTCATCTTTAGAAATTCTGCAAATTTCATTTGCTTTTACAATGATTTGTTGAGTTGGTTCATATTATGCTTTTGGTTAACAAATTGGCATCTTATTTTAGCTTATTATTGT

mRNA sequence

ATGGAGTTCCTCGATGAAGATGCGAAGCCCAGGGACACTGCTGGACAGGAAAGATTCAGAAGTTTAATACCAAGCTATATCAGGGACTCGTCTGTCGCGGTCATCGTTTATGATGTTGCAAGCCGGCAGACTTTCGTAAACACTTCGAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTTATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCAAAAGCTGGATTCAATATCAAGGCACTATTCCGAAAAATTGCTGCAGCATTGCCCGGAATGGAAACTCTCTCTTCGACAAAGCAAGAGGACATGGTTGATGTCAACCTGAAGTCATCAGGCAGTGGTGCTGCACAATCCCAGCCGCAGTCCGGTGGATGCGCCTGCTAGTGAGGCTCGACATTGAGGAATCGCTCGCTCTTTCTTGCCTTTTGTTTTCAACACCTCAATCTTCTAGAACTGTGGCATTCAGGTACAAGGTGTGGTTATATCTATCAATGCCTGCTTGAGCAATTCGTAAAATGTAATAGGTGGCAAGAGTAGGCGGCTGTTATTTTATGGAGTAATTTGATGTATTGGTGGAGTCATTATTTGGGTTTTGGGATTTGGGAGGTGTAAAAATTAGAAAATTTATCTGTCGGACTCGATTACAGAATTTTGCTTGTCTTAAATTCTGCAAATTTCATTTGCTTTTACAATGATTTGTTGAGTTGGTTCATATTATGCTTTTGGTTAACAAATTGGCATCTTATTTTAGCTTATTATTGT

Coding sequence (CDS)

ATGGAGTTCCTCGATGAAGATGCGAAGCCCAGGGACACTGCTGGACAGGAAAGATTCAGAAGTTTAATACCAAGCTATATCAGGGACTCGTCTGTCGCGGTCATCGTTTATGATGTTGCAAGCCGGCAGACTTTCGTAAACACTTCGAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTTATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCAAAAGCTGGATTCAATATCAAGGCACTATTCCGAAAAATTGCTGCAGCATTGCCCGGAATGGAAACTCTCTCTTCGACAAAGCAAGAGGACATGGTTGATGTCAACCTGAAGTCATCAGGCAGTGGTGCTGCACAATCCCAGCCGCAGTCCGGTGGATGCGCCTGCTAG

Protein sequence

MEFLDEDAKPRDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSGSGAAQSQPQSGGCAC

Homology

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy Swiss-Prot
Match: O80501 (Ras-related protein RABH1b OS=Arabidopsis thaliana OX=3702 GN=RABH1B PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.0e-65
Identity = 129/145 (88.97%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ+F+NT+KWI+EVRTERGSDVI+VLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLV+KRQVS+EE EAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           MVDVNLKSS + A+ +Q QSGGC+C
Sbjct: 184 MVDVNLKSSNANASLAQQQSGGCSC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy Swiss-Prot
Match: Q9LFT9 (Ras-related protein RABH1e OS=Arabidopsis thaliana OX=3702 GN=RABH1E PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.9e-61
Identity = 124/145 (85.52%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQ+F+NTSKWIE+VRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLV+KRQVS+EEG+ KAR+  V+FIETSAKAGFNIK LFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           MVDVNLK+S S +AQ + Q GGCAC
Sbjct: 184 MVDVNLKTS-SNSAQGEQQRGGCAC 207

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy Swiss-Prot
Match: Q9SID8 (Ras-related protein RABH1d OS=Arabidopsis thaliana OX=3702 GN=RABH1D PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 114/145 (78.62%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAV+VYDVA+R +F+NTSKWIEEVR ER  DVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVS+EEG++K RE  VMFIETSAKAGFNIK LFRKIAAALPGME+ S+TK ED
Sbjct: 124 TDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTKNED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           MVDVNLK + S ++Q   Q G C+C
Sbjct: 184 MVDVNLKPT-SNSSQGDQQGGACSC 207

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy Swiss-Prot
Match: Q9LV79 (Ras-related protein RABH1a OS=Arabidopsis thaliana OX=3702 GN=RABH1A PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.6e-50
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERF+SL+PSYIRDSSVAVIVYDVAS+Q+F+NTSKWIEEVR ERGS VIIVLVGNK
Sbjct: 62  DTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSYVIIVLVGNK 121

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLV KRQVS+EEGE KARE   +F+ETSAKAGFNIK LF KI +AL G E +S TKQED
Sbjct: 122 TDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQGNEAVSWTKQED 181

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           +VDVNLK     +  +  Q   C+C
Sbjct: 182 LVDVNLKPLMFSSQANHQQESNCSC 206

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy Swiss-Prot
Match: Q9SMR4 (Ras-related protein RABH1c OS=Arabidopsis thaliana OX=3702 GN=RABH1C PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-49
Identity = 109/152 (71.71%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERG-SDVIIVLVGN 71
           DTAGQERFRSLIPSYIRDSSVA++VYDV++RQTF+NTSKWIE+V  ERG S+VIIVLVGN
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGN 123

Query: 72  KTDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS-STKQ 131
           KTDLVEKRQVS+ EGE K +E  VMFIETSAK  FNIKALFRKIAAALPG+++ S +TK 
Sbjct: 124 KTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLATKS 183

Query: 132 EDMVDVNLKSSGSGAAQSQPQ-----SGGCAC 157
           +DMVDVNLK++ S ++Q + Q      GGC+C
Sbjct: 184 DDMVDVNLKTT-SNSSQGEQQGGAGGGGGCSC 214

[Close]

BLAST of Cp4.1LG05g02040 vs. NCBI nr
Match: XP_022958673.1 (ras-related protein RABH1b [Cucurbita moschata] >XP_023533385.1 ras-related protein RABH1b [Cucurbita pepo subsp. pepo] >KAG6606223.1 Ras-related protein RABH1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274 bits (701), Expect = 1.97e-91
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKSSGSGAAQSQPQSGGCAC
Sbjct: 184 MVDVNLKSSGSGAAQSQPQSGGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. NCBI nr
Match: XP_022996115.1 (ras-related protein RABH1b [Cucurbita maxima])

HSP 1 Score: 273 bits (698), Expect = 5.64e-91
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKS+GSGAAQSQPQSGGCAC
Sbjct: 184 MVDVNLKSTGSGAAQSQPQSGGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. NCBI nr
Match: XP_022159735.1 (ras-related protein RABH1b [Momordica charantia])

HSP 1 Score: 273 bits (697), Expect = 8.00e-91
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTF+NTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVS+EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKSSGSGAAQSQPQSGGCAC
Sbjct: 184 MVDVNLKSSGSGAAQSQPQSGGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. NCBI nr
Match: KAG7036170.1 (Ras-related protein RABH1b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274 bits (701), Expect = 8.66e-91
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 108 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 167

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 168 TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 227

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKSSGSGAAQSQPQSGGCAC
Sbjct: 228 MVDVNLKSSGSGAAQSQPQSGGCAC 252

[Close]

BLAST of Cp4.1LG05g02040 vs. NCBI nr
Match: XP_038889006.1 (ras-related protein RABH1b [Benincasa hispida])

HSP 1 Score: 271 bits (694), Expect = 2.29e-90
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTF+NTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVS+EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKS+GSGAAQSQPQSGGCAC
Sbjct: 184 MVDVNLKSTGSGAAQSQPQSGGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy TrEMBL
Match: A0A6J1H3Q8 (ras-related protein RABH1b OS=Cucurbita moschata OX=3662 GN=LOC111459827 PE=4 SV=1)

HSP 1 Score: 274 bits (701), Expect = 9.53e-92
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKSSGSGAAQSQPQSGGCAC
Sbjct: 184 MVDVNLKSSGSGAAQSQPQSGGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy TrEMBL
Match: A0A6J1K5U1 (ras-related protein RABH1b OS=Cucurbita maxima OX=3661 GN=LOC111491433 PE=4 SV=1)

HSP 1 Score: 273 bits (698), Expect = 2.73e-91
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKS+GSGAAQSQPQSGGCAC
Sbjct: 184 MVDVNLKSTGSGAAQSQPQSGGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy TrEMBL
Match: A0A6J1DZL5 (ras-related protein RABH1b OS=Momordica charantia OX=3673 GN=LOC111026075 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 3.87e-91
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTF+NTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVS+EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKSSGSGAAQSQPQSGGCAC
Sbjct: 184 MVDVNLKSSGSGAAQSQPQSGGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy TrEMBL
Match: A0A5A7TB19 (Ras-related protein RABH1b-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004050 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 9.09e-90
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTF+NTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVS+EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKS+GSGAAQSQPQS GCAC
Sbjct: 184 MVDVNLKSTGSGAAQSQPQSSGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. ExPASy TrEMBL
Match: A0A0A0LI95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910690 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 9.09e-90
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTF+NTSKWIEEVRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVS+EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 156
           MVDVNLKS+GSGAAQSQPQS GCAC
Sbjct: 184 MVDVNLKSTGSGAAQSQPQSSGCAC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. TAIR 10
Match: AT2G44610.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-66
Identity = 129/145 (88.97%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ+F+NT+KWI+EVRTERGSDVI+VLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLV+KRQVS+EE EAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           MVDVNLKSS + A+ +Q QSGGC+C
Sbjct: 184 MVDVNLKSSNANASLAQQQSGGCSC 208

[Close]

BLAST of Cp4.1LG05g02040 vs. TAIR 10
Match: AT5G10260.1 (RAB GTPase homolog H1E )

HSP 1 Score: 235.0 bits (598), Expect = 4.2e-62
Identity = 124/145 (85.52%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQ+F+NTSKWIE+VRTERGSDVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLV+KRQVS+EEG+ KAR+  V+FIETSAKAGFNIK LFRKIAAALPGMETLSSTKQED
Sbjct: 124 TDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           MVDVNLK+S S +AQ + Q GGCAC
Sbjct: 184 MVDVNLKTS-SNSAQGEQQRGGCAC 207

[Close]

BLAST of Cp4.1LG05g02040 vs. TAIR 10
Match: AT2G22290.1 (RAB GTPase homolog H1D )

HSP 1 Score: 217.2 bits (552), Expect = 9.1e-57
Identity = 114/145 (78.62%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERFRSLIPSYIRDSSVAV+VYDVA+R +F+NTSKWIEEVR ER  DVIIVLVGNK
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLVGNK 123

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLVEKRQVS+EEG++K RE  VMFIETSAKAGFNIK LFRKIAAALPGME+ S+TK ED
Sbjct: 124 TDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTKNED 183

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           MVDVNLK + S ++Q   Q G C+C
Sbjct: 184 MVDVNLKPT-SNSSQGDQQGGACSC 207

[Close]

BLAST of Cp4.1LG05g02040 vs. TAIR 10
Match: AT5G64990.1 (RAB GTPase homolog H1A )

HSP 1 Score: 199.1 bits (505), Expect = 2.6e-51
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERF+SL+PSYIRDSSVAVIVYDVAS+Q+F+NTSKWIEEVR ERGS VIIVLVGNK
Sbjct: 62  DTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSYVIIVLVGNK 121

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLV KRQVS+EEGE KARE   +F+ETSAKAGFNIK LF KI +AL G E +S TKQED
Sbjct: 122 TDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQGNEAVSWTKQED 181

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           +VDVNLK     +  +  Q   C+C
Sbjct: 182 LVDVNLKPLMFSSQANHQQESNCSC 206

[Close]

BLAST of Cp4.1LG05g02040 vs. TAIR 10
Match: AT5G64990.2 (RAB GTPase homolog H1A )

HSP 1 Score: 199.1 bits (505), Expect = 2.6e-51
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 12  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNK 71
           DTAGQERF+SL+PSYIRDSSVAVIVYDVAS+Q+F+NTSKWIEEVR ERGS VIIVLVGNK
Sbjct: 69  DTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSYVIIVLVGNK 128

Query: 72  TDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 131
           TDLV KRQVS+EEGE KARE   +F+ETSAKAGFNIK LF KI +AL G E +S TKQED
Sbjct: 129 TDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQGNEAVSWTKQED 188

Query: 132 MVDVNLKSSGSGAAQSQPQSGGCAC 157
           +VDVNLK     +  +  Q   C+C
Sbjct: 189 LVDVNLKPLMFSSQANHQQESNCSC 213

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g02040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80501	4.0e-65	88.97	Ras-related protein RABH1b OS=Arabidopsis thaliana OX=3702 GN=RABH1B PE=1 SV=1	[more]
Q9LFT9	5.9e-61	85.52	Ras-related protein RABH1e OS=Arabidopsis thaliana OX=3702 GN=RABH1E PE=2 SV=1	[more]
Q9SID8	1.3e-55	78.62	Ras-related protein RABH1d OS=Arabidopsis thaliana OX=3702 GN=RABH1D PE=3 SV=1	[more]
Q9LV79	3.6e-50	72.41	Ras-related protein RABH1a OS=Arabidopsis thaliana OX=3702 GN=RABH1A PE=3 SV=1	[more]
Q9SMR4	1.0e-49	71.71	Ras-related protein RABH1c OS=Arabidopsis thaliana OX=3702 GN=RABH1C PE=1 SV=1	[more]

BLAST of Cp4.1LG05g02040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958673.1	1.97e-91	100.00	ras-related protein RABH1b [Cucurbita moschata] >XP_023533385.1 ras-related prot...	[more]
XP_022996115.1	5.64e-91	99.31	ras-related protein RABH1b [Cucurbita maxima]	[more]
XP_022159735.1	8.00e-91	98.62	ras-related protein RABH1b [Momordica charantia]	[more]
KAG7036170.1	8.66e-91	100.00	Ras-related protein RABH1b, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038889006.1	2.29e-90	97.93	ras-related protein RABH1b [Benincasa hispida]	[more]

BLAST of Cp4.1LG05g02040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3Q8	9.53e-92	100.00	ras-related protein RABH1b OS=Cucurbita moschata OX=3662 GN=LOC111459827 PE=4 SV...	[more]
A0A6J1K5U1	2.73e-91	99.31	ras-related protein RABH1b OS=Cucurbita maxima OX=3661 GN=LOC111491433 PE=4 SV=1	[more]
A0A6J1DZL5	3.87e-91	98.62	ras-related protein RABH1b OS=Momordica charantia OX=3673 GN=LOC111026075 PE=4 S...	[more]
A0A5A7TB19	9.09e-90	97.24	Ras-related protein RABH1b-like isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0LI95	9.09e-90	97.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910690 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g02040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44610.1	2.8e-66	88.97	Ras-related small GTP-binding family protein	[more]
AT5G10260.1	4.2e-62	85.52	RAB GTPase homolog H1E	[more]
AT2G22290.1	9.1e-57	78.62	RAB GTPase homolog H1D	[more]
AT5G64990.1	2.6e-51	72.41	RAB GTPase homolog H1A	[more]
AT5G64990.2	2.6e-51	72.41	RAB GTPase homolog H1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 7..120 e-value: 9.0E-7 score: -31.3
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 12..117 e-value: 1.3E-34 score: 119.2
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..156 score: 12.511421
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 2..121 e-value: 9.5E-10 score: 23.5
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 1..121 e-value: 6.9E-30 score: 115.3
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 9..156
None	No IPR available	PANTHER	PTHR24073:SF952	SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED	coord: 9..156
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..156 score: 20.293819
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..151 e-value: 1.0E-41 score: 144.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 12..130
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..114 e-value: 1.1E-13 score: 49.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g02040.1	Cp4.1LG05g02040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0042147	retrograde transport, endosome to Golgi
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding