Cp4.1LG05g01770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g01770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Small nuclear ribonucleoprotein Sm D1
Location	Cp4.1LG05: 58820 .. 62836 (+)
RNA-Seq Expression	Cp4.1LG05g01770
Synteny	Cp4.1LG05g01770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTTACGTACTGAGAAAAATGTTGATGTTTTGAAGCTATGGAGAACGGAAAAAAGGAAGGAAGCTCACTGATAAAAATGGTGAAACCAGGAGGACGAAGGGAAAGACGAGCGGAAAATCGGAGCAGCAGAGACGGAGAGTGTAGGGAGCGACGGTAATGGTTGTACCTGTACGCGCCAGCTGCAGTATTTTCTCATACCAAGCACCCCACTTCTTTATTTGTTTATTTATTATACGTAATTTTCTTTTTCGTCCTTTTATTCTTTATATTATCATTTATATCCACCTATTTTCTCCATTTACTTATCAGGCGTACCACATACTTGAAATTGTACAAATTTCCCCTCCCGCCTCCTTTGTCTGTCTGTGCTTGAAACCCTACATTTTGCAATTCCCCCGCCATCATGAAGCTTGTCAGGTATTCTCTTCTTTTTTCTTACTCTGAGCTTCTTTTTTCTCGAACTACTCGTTGTTTGATGTATTTAGTGGTCGTTTTATGTTTAGAAACTTGGTTTTGATGAATTCACAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGGCACCATCACAGGTTTCCATCTCTCTTTCACTCACTAACTCGCACTGCATAAAAACTTCATTAATCTTGTTAAACCCTTAAACCCTAGATTTACGAACTTACCGGCAGAGGTTTTTTAAACTTTAACTTCCATTCTGTTTTCATCTTTGTACGCCACTATATTGGAAGTTGTAGAATATCTCAGTGCAAAGTGATAATTGGAATTTGGATTCTTTTGTCAATTTAGAGTGGTTCATGATATACCACAAGCCTTCTGGCTCTTGATAACCTTGGAATACGTAGATGTTTCTCGGCGACATTGCTACAAACTGGGGGTGACAACCCAACTTGGGAACTTTATTTTAGCTTCTCTTGGGGTGTTGAGGCTTCTGTAAGTAAGAGTAAGAGACTGCACAAACATCCTGTCTATCCTGGGGAGATTCATAACTTATTTAACCAAAGGACTTTTCAGCTTTAGCAGGTTTTGGATAGTTCAATGAAAGTGGTTTTAGTGGAGATACAATTGGATGAATCAATGGATCCTACTACTTTGTCTTGGCCAGCTTCTAATTGAACCCTATTGATCTTTTCTGCAAAGGCAATCCAACTACCAATTTCTCTATTTAAAAGAGCCAACAAGCACTCCACAATTATCCTCCAATGTAACCTTTGGTTTAGGTTTCATAGCAAATTCTTGTGGTTCCACCCCATATGCCAACCATCACCTCTCACCGTGACCATTTAAGGAGGGCACTATTTCTCTACTTATAGAAGAGCCAAACCCCAAGACCCAATGGAAGGGAAGTCCAACTCCATTTCGATCAAGTATCTTATATCCCCCCTCCCCACACCCCAAAAAAAAAAAAATGTTGGTGATTATGGTGAGATTGCATTTTGTTGTGGACACCTCCTATCCAGCTTCCACTTAATGTATTTTTCTATGTGCTGTTGGTTCTGAAACTAATTATTGTTGTCTTTTCTTACAACTGTTTTTATGGAAGAGTTCTACTCAATGTCATAGTTTTAGTTGGTCACACCTTCTGTTGTAGGATTTCACTTGAAACTATAAATCAATATATACAATATGCTTGAATAACCTACCTTGCAGTGCACTATGACTTGGCCTAATTGAATAAGGGTCATGTAAATAACAAATGACTTGGAGAGAATGGATTCAAGCCATGTTGGTTACCTACTTAGGATTTATTATCCTATGACTTACCTTGGCAACAGAATATAGTAGGGTCAGTCAGTTGTCGCAAGTTGGATCTGAAATGAATAGATATGAAAAAAAATGAAAAATAAAAACCTATCTTGCACTTGCAGCTTGTGAAATTTGTTTGGCCTAATACGTTGAAGCATCTAAATTACGCTCTACGTTCCTGTTTTCTATAATTTATTTCTAAAACATGCTCAGATGAGTATTATTATTATTTTTTTTAAAAAAAAGAACAATGACGGCATGAACTTGATGTAGAAGCTCTTACTCTTTTTACTTAAAACCAAGCATTGGTCAAGGTTAGAAGTCATTGACGGGCTGATTTTCTTGTATCACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGAAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGCGCTGTCTTTGCATTTTGCCTGTACTTTATGGTGTTTTCTGATAGTCAAATTGTTTATACTGAATCGTATGCCACCCAGTGTCAAATATGTTGCTTATGTATTTCCCCATTCTTTTGCAACTATAGGGAAGCCTTTGGGGCGTGGACGAGGACGAGGCCGTGGTCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTTCAAATTTTGATCTCCGTAGTGTAAACACTTGTATCTTAGGGAAAGTTTGTGAATTTAATGACGTGAAGATGTGGTATAGCAATTCACTGTCCGATCTCACATGTTTATTACAATGCTATTCAGTTGTTTTTTCTGTGATCGATGTAGCTTTGCTATGTGGCTGGGATCTGCCCCTGTTAATGATTTACTCTAATATCATCAACAATGATCAAACTCTTGTATGTCTTCAAATTAATATTTCGTTTCTTTACTCAACTCTGAAAGATGTAGTCATTAAGTACTTGAGTTGGTTATGATGAATATGAACTTGTTTCGTAGGGTTGCTGAAGACACTATTTTGGCAAGTAATGATGGTAAGACTCTTGGTGGCGTTTTCTTCTACCTTGAAATAAAAGTCGAGAGTTCTCTAGAGTTTAGAGCTCTTTCTTCCTCCAACTGCGTTCTTTTCATTAACTCGGACAAGCAAATCACCGTGGGGTGGTAGAGGCTCTGTAGTCTGAAGCTTATCAGGTTCTTGAATTTGCCTTTTCAAGGACGTGATGGAAATTATAAGGAAGTACGCAAACATCTGGTCCAGATTCAATTGAAAGAGAACTCAGTTTATGGTTCTTGTGAAATGGATTTGCAAATGTTACGTTTATCCTTGTTTCATTACGGTTCTTAGTGTGATAAAGTTCTAAAAGTAACGGTGTTTTTTTTTTTTTTTTTTTTTCCTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGCGTGGTGTGCTTAAAGGAAGATCTTGGACTAATTGACCTTTGTTTAATGGTTTGCTAACAAATATTTTCTTCGTCACTAAGGTGAGGAGGAAGAGTAGGAGGGAACTCTGAAAGACCTAGCCGTAGCCGACACAGCAAGAAAAAATGGGAAAGAAACAGTCTGATACCAAGCAAGCAGCTATCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGGGTCCGCTCCGCCATGGACAACTCTGATCCGGCTCGGGATACCGACGACCTTGCAGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGCTTAAAGTGGCAGTTCGAAGGTCCGACAGAGTGGGATGATGAAATAGTTTGTTGCCCGTCATGTTGTACTTGTAAAAGGTGGAATTTTAGATATTTTCACTCCGTATCATATAATAAGGTCAGTACTAGACCTTTTTTTAATTGAGTTGAAGTGATTCAGTTTTTAGTTTTATAATTAGTGCCTCTAAAACCTCGTCTCCGG

mRNA sequence

ACGTTACGTACTGAGAAAAATGTTGATGTTTTGAAGCTATGGAGAACGGAAAAAAGGAAGGAAGCTCACTGATAAAAATGGTGAAACCAGGAGGACGAAGGGAAAGACGAGCGGAAAATCGGAGCAGCAGAGACGGAGAGTGTAGGGAGCGACGGTAATGGTTGTACCTGTACGCGCCAGCTGCAGTATTTTCTCATACCAAGCACCCCACTTCTTTATTTGTTTATTTATTATACGTAATTTTCTTTTTCGTCCTTTTATTCTTTATATTATCATTTATATCCACCTATTTTCTCCATTTACTTATCAGGCGTACCACATACTTGAAATTGTACAAATTTCCCCTCCCGCCTCCTTTGTCTGTCTGTGCTTGAAACCCTACATTTTGCAATTCCCCCGCCATCATGAAGCTTGTCAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGGCACCATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGAAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGCGCTGTCTTTGCATTTTGCCTGGAAGCCTTTGGGGCGTGGACGAGGACGAGGCCGTGGTCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTTCAAATTTTGATCTCCGTAGTGTAAACACTTGTATCTTAGGGAAAGTTTGTGAATTTAATGACGTGAAGATGTGGGTTGCTGAAGACACTATTTTGGCAAGTAATGATGGTAAGACTCTTGGTGGCGTTTTCTTCTACCTTGAAATAAAAGTCGAGAGTTCTCTAGAGTTTAGAGCTCTTTCTTCCTCCAACTGCGTTCTTTTCATTAACTCGGACAAGCAAATCACCGTGAGGAGGAAGAGTAGGAGGGAACTCTGAAAGACCTAGCCGTAGCCGACACAGCAAGAAAAAATGGGAAAGAAACAGTCTGATACCAAGCAAGCAGCTATCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGGGTCCGCTCCGCCATGGACAACTCTGATCCGGCTCGGGATACCGACGACCTTGCAGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGCTTAAAGTGGCAGTTCGAAGGTCCGACAGAGTGGGATGATGAAATAGTTTGTTGCCCGTCATGTTGTACTTGTAAAAGGTGGAATTTTAGATATTTTCACTCCGTATCATATAATAAGGTCAGTACTAGACCTTTTTTTAATTGAGTTGAAGTGATTCAGTTTTTAGTTTTATAATTAGTGCCTCTAAAACCTCGTCTCCGG

Coding sequence (CDS)

ATGAAGCTTGTCAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGGCACCATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGAAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGCGCTGTCTTTGCATTTTGCCTGGAAGCCTTTGGGGCGTGGACGAGGACGAGGCCGTGGTCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTTCAAATTTTGATCTCCGTAGTGTAAACACTTGTATCTTAGGGAAAGTTTGTGAATTTAATGACGTGAAGATGTGGGTTGCTGAAGACACTATTTTGGCAAGTAATGATGGTAAGACTCTTGGTGGCGTTTTCTTCTACCTTGAAATAAAAGTCGAGAGTTCTCTAGAGTTTAGAGCTCTTTCTTCCTCCAACTGCGTTCTTTTCATTAACTCGGACAAGCAAATCACCGTGAGGAGGAAGAGTAGGAGGGAACTCTGA

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMRCLCILPGSLWGVDEDEAVVVVVVVDARFVAVSNFDLRSVNTCILGKVCEFNDVKMWVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINSDKQITVRRKSRREL

Homology

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BLAST of Cp4.1LG05g01770 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.3e-46
Identity = 90/95 (94.74%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 96
          RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.1e-44
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 96
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]

BLAST of Cp4.1LG05g01770 vs. NCBI nr
Match: RZB54124.1 (Small nuclear ribonucleoprotein SmD1b [Glycine soja])

HSP 1 Score: 192 bits (488), Expect = 6.41e-59
Identity = 98/118 (83.05%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMRCLCI---LPGSLWGVDEDEAV 115
           RGNNIRYYILPDSLNLETLLVEETP++KPKKPTAG+          G+LW VDE+ AV
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGLIFNIFSSHFQGNLWDVDEEGAV 118

[Close]

BLAST of Cp4.1LG05g01770 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (494), Expect = 1.45e-58
Identity = 110/153 (71.90%), Postives = 113/153 (73.86%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLS- 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMRCLCILPGSLWGVDEDEAVVVVVV 120
                                   P   P+          +L GSLWGVDEDEAV VVVV
Sbjct: 61  ----------------------RHPGSSPRN---------LLQGSLWGVDEDEAVGVVVV 120

Query: 121 VDARFVAVSNFDLRSVNTCILGKVCEFNDVKMW 153
           VDARFVAVSNFDLRSVNTCILGKVCEF+DVKMW
Sbjct: 121 VDARFVAVSNFDLRSVNTCILGKVCEFSDVKMW 121

[Close]

BLAST of Cp4.1LG05g01770 vs. NCBI nr
Match: KAG6491275.1 (hypothetical protein ZIOFF_052613 [Zingiber officinale])

HSP 1 Score: 191 bits (485), Expect = 2.87e-58
Identity = 105/139 (75.54%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL NETVSIELKNGTVVHGTI GVDISMNTHLK VKLT+KGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLTNETVSIELKNGTVVHGTIIGVDISMNTHLKTVKLTVKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMRCLCILP--GSLW------GVDED 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGM C+      G LW      GV  D
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMLCVYAFHARGGLWAVVVAEGVVAD 120

Query: 121 EAVVVVVVVDARFVAVSNF 131
           EAV V  +   R V+ S +
Sbjct: 121 EAVAVSCIHFIRIVSASAY 139

[Close]

BLAST of Cp4.1LG05g01770 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG7011241.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188 bits (477), Expect = 9.40e-58
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus])

HSP 1 Score: 188 bits (477), Expect = 9.40e-58
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy TrEMBL
Match: A0A445FZD7 (Small nuclear ribonucleoprotein Sm D1 OS=Glycine soja OX=3848 GN=D0Y65_049854 PE=3 SV=1)

HSP 1 Score: 192 bits (488), Expect = 3.10e-59
Identity = 98/118 (83.05%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMRCLCI---LPGSLWGVDEDEAV 115
           RGNNIRYYILPDSLNLETLLVEETP++KPKKPTAG+          G+LW VDE+ AV
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGLIFNIFSSHFQGNLWDVDEEGAV 118

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy TrEMBL
Match: A0A4D9ABI6 (Small nuclear ribonucleoprotein Sm D1 OS=Salvia splendens OX=180675 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 188 bits (477), Expect = 4.27e-58
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTI GVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTIIGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMRCL 99
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGM+ L
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGMKIL 99

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 188 bits (477), Expect = 4.55e-58
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1)

HSP 1 Score: 188 bits (477), Expect = 4.55e-58
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. ExPASy TrEMBL
Match: A0A0A0LD16 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900 PE=3 SV=1)

HSP 1 Score: 188 bits (477), Expect = 4.55e-58
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.1e-47
Identity = 90/95 (94.74%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 96
          RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-45
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 96
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-45
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 96
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95

[Close]

BLAST of Cp4.1LG05g01770 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 177.9 bits (450), Expect = 8.3e-45
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 96
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 105

[Close]

BLAST of Cp4.1LG05g01770 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-06
Identity = 23/93 (24.73%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
           V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+
Sbjct: 9   VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEETPRVKPKKPTAGM 97
            +R+ ++PD L    +      R+K K  + G+
Sbjct: 69  KVRFMVIPDILKHAPMFKRLDARIKGKSSSLGV 101

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g01770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY09	4.3e-46	94.74	Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P...	[more]
Q9SSF1	3.1e-44	91.58	Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P...	[more]
Q3ZC10	1.2e-32	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1	[more]
P62314	1.2e-32	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=...	[more]
Q4R5F6	1.2e-32	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P...	[more]

BLAST of Cp4.1LG05g01770 vs. NCBI nr


Match Name	E-value	Identity	Description
RZB54124.1	6.41e-59	83.05	Small nuclear ribonucleoprotein SmD1b [Glycine soja]	[more]
KAG6606428.1	1.45e-58	71.90	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6491275.1	2.87e-58	75.54	hypothetical protein ZIOFF_052613 [Zingiber officinale]	[more]
XP_022963993.1	9.40e-58	100.00	small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 ...	[more]
XP_004150106.1	9.40e-58	100.00	small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTE...	[more]

BLAST of Cp4.1LG05g01770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445FZD7	3.10e-59	83.05	Small nuclear ribonucleoprotein Sm D1 OS=Glycine soja OX=3848 GN=D0Y65_049854 PE...	[more]
A0A4D9ABI6	4.27e-58	95.96	Small nuclear ribonucleoprotein Sm D1 OS=Salvia splendens OX=180675 GN=SNRPD1 PE...	[more]
A0A6J1DVC4	4.55e-58	100.00	Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1K070	4.55e-58	100.00	Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11149127...	[more]
A0A0A0LD16	4.55e-58	100.00	Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900...	[more]

BLAST of Cp4.1LG05g01770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02840.1	3.1e-47	94.74	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	2.2e-45	91.58	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	2.2e-45	91.58	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	8.3e-45	85.71	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	4.5e-06	24.73	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..70 e-value: 1.1E-16 score: 71.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 5..69 e-value: 1.7E-17 score: 62.8
None	No IPR available	GENE3D	2.30.30.100		coord: 1..85 e-value: 4.5E-33 score: 114.6
None	No IPR available	PANTHER	PTHR23338:SF48	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1	coord: 1..97
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..97
IPR034102	Small nuclear ribonucleoprotein D1	CDD	cd01724	Sm_D1	coord: 2..93 e-value: 9.09038E-62 score: 185.506
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g01770.1	Cp4.1LG05g01770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0006396	RNA processing
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding