Cp4.1LG05g01530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g01530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionexosome complex component RRP4 homolog
LocationCp4.1LG05: 26343 .. 30129 (-)
RNA-Seq ExpressionCp4.1LG05g01530
SyntenyCp4.1LG05g01530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCGATAATGGTGGCAAGGCCGGAAAAGAGTATGTAGGAAGCAGAGTTGAGCCAAGTGGAAAACAAATTTAAAAATAATTGTTGATTTCGTAACTATGTTTTGAAAAAATAAAACACAATAAGGTCATTTGATTTTGGCGCAGTTTCTTAAGGTCGTCCGTGTACAAAAACTCATTTATTTTCTTCTCCCTCCCATTTTTTTCCTATGAACCCTAGATTTACGCCGTCGCTCTGCTAAGAAGCCGCCGTCCACGTCCAACTTTGTCAAGACCCACCGTGTTTCAACCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCGTACGTTCAACTTCGCTGATGGACCACGTTCTCCATTTCTTTCCCTCTCTCCTCTGCAACCATTGACGCTGTTTGCCGTCCGCATTTTGTATTTTTTCGTTTGCAGATCGCCTCGTTTCAGGGTCACTGCCGTCGTTGCATAGACGGCACCTGGTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGGTTTGCTCGTCCACCTCTGTTCCTTTTATTCATTTTTTCCTCTATCTTCAGCAACCGCCGGCAACCTGTTCCCTCATTTGCACATTGTTCCATGTCCATAATTGATTGTTTTTTTTGCACAGTCGTGACTCGAAGAAATAATTATGTTGCGACGTTGCTAGTCCTTATTTGTGTAATTTTTTTCATCACGTACCAAATTATTACCGGATATCTGTACAAATATTTTGTTCTAGTACGTCGATTTTGGTGATCAGCATCCTGCAGCACCCCTATGTTCTAATTTAGTAATTTTCTAAATGCAGATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCTAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAAGATGGTGTCCTCAAGTATATAATTCCTCACTATCTTTATACAATAGATATTTGGTTTGTGTACTTGCATGGGGGTTATTGCATTGAGGTTTAATTGAAATGTGTATACAGGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTCGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGGTTGTCCATGAATCTTTATAATTTGATTTTTCTTGATGATAGTTTAATGTTTCCCTTCTTTTGGTTTCTTGTTAGGGCGTCTTTTCTGATGCATTTGTCTGTATTGTTTATTAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTAAAACCAAATGCTTTTTATTAGGTTTAAGTTGGTGAGTAAAACTTATTCCTGAGTCATGGTTATGCTGTTCAAATCTGAAAAACGTGTTACAATGCAACCCCCCCCCCNCAGGTTGCTCCCAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGGTACTGGAGAAATCCCTTTTTTTTATTTACATAATGGTGTCTCGCACCAGACGATGAATTACTGCTGAATTTTGTAGATAACTCTACTGCAAACTTGCTGCAGTTTATCTTTTATAGAGTGATTGCGTTTGTGGATTACTGTTTGATATTCCTTTTTTTTTTTCTAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGTAAGTTTTTTGTTCCATTTTCACCTAGCACCATCAGAAAGAATACATGCTACCAATTTTCTCATGTGACATACGTCTAAGTGGGTTTGTTCCATGTTTTGAATATTTTGAAGCATTAAAATTTTATTAGTTTTTTTGGTTAGATAATTGTTTGATCCTAGGATATTTGATTGTTAAGAAACTTGTAGGATTTTAATATCATAGGAGAGTACCGTGGTACTGTGGTACCATGGAGTTCGAACCATAACTTTAAGTTATACTGCCTTGACCTTTTGGCCAAAACACAATGGCCATGAATTTTTTTTATTTAACTCACAACGCCTTTGTAAAAGGTATGGAGCATAGGCTCCAGCACATTAGATTGATAGATGCATCTTTGGCACCTTGCTTGGTTTTGGGCCAGGTGTCTTAACTCAAGGGCCCTTTTGTGGCTTGTTGCTCTTCACTAAGGTCCCATTATTATTTTTTTGACATTCTAATGTTGTAGGTTCTTAACTCAAGAGCCTTTTTGTGCCTCTTGCCCATAAGTGTCATTCTTTAATTTTCTCTACTTTTCTCGCCTATAATTAAACACCACTCTCATCATTGATTGTTTCACATGCTTCATTTTCCAGTCAAGAAAAAAAAAATAATAATAACATCACCATAACTTTTCTCAGGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGGAAGGTGAAATGAGTCATTTTTTTAAGCTTCTGGATGTTGATGTAATAACAAAATAAGCTTTTGAAACAAATTTCCATACACATCTTCCCTTGTTTCTTAGGAGAGATTCTGTAAAAAGATTCTTGAAAGAATGTGAGTACTAATTTATAGAAGAACCTCGTGGGTAAATTCTAGTGGTTAAAACAAATTGTAAAGATGGGTTTGTTTGTTGCCCAGGAATAAGGAAAAAGGGCTGTGATTAATGTGAAAAGAGTGACGGGTAGAAATCATTGAGTGAATGTAAGAACCAGCTAGCAGATGTGCCGAGGTAAGACAAAATGTAAGAGATGGTAAAAGAAAAGTTATTGTGCGAATGCGAAAAAACCGATCCACCGCTAAGGCGTGAATAGCTATAACGCAATATCTCGACACAGAAATTATGTTTACTTCTGATTGTTATATTTTCCTTTTATGCTTAAGCGTGATAAGTTCACAATCTTGGGAGGGTTATATTTGAATTAGATTTCTTCGTTGCAATGGTTATTATGTTCCTGACAACTTTTCTTAGTGACCGTTTTAAATATTGTTTTTCTTGATCAATAAGATTACTGCATTTGTATCCAGCTTGAAAGAGGTCAGCTGCTCACGGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAATTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAGGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGATTTGGTTTCCAAAATTGTGTAATTCACTCTTGCTGGAAATTTTGCTACGAACAATTTGATTTTCTGAGGAACTCACTATGAGATCTTAGTTTGTGGAATTTTATGATACCGACGATTGGTCTGCTACTAGTGTTAACATTATAGAATGCAATATTTGCTTAATTATTCTGTAGTAAGTGGTTTCATAACTTCACTAAATTTTATAAAATGTAGTATTTTCGCGGAT

mRNA sequence

TATCGATAATGGTGGCAAGGCCGGAAAAGAATTTACGCCGTCGCTCTGCTAAGAAGCCGCCGTCCACGTCCAACTTTGTCAAGACCCACCGTGTTTCAACCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCATCGCCTCGTTTCAGGGTCACTGCCGTCGTTGCATAGACGGCACCTGGTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCTAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAAGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTCGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGGAAGCTTGAAAGAGGTCAGCTGCTCACGGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAATTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAGGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGATTTGGTTTCCAAAATTGTGTAATTCACTCTTGCTGGAAATTTTGCTACGAACAATTTGATTTTCTGAGGAACTCACTATGAGATCTTAGTTTGTGGAATTTTATGATACCGACGATTGGTCTGCTACTAGTGTTAACATTATAGAATGCAATATTTGCTTAATTATTCTGTAGTAAGTGGTTTCATAACTTCACTAAATTTTATAAAATGTAGTATTTTCGCGGAT

Coding sequence (CDS)

ATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCTAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAAGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTCGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGGAAGCTTGAAAGAGGTCAGCTGCTCACGGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAATTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAGGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGA

Protein sequence

MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGSKFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG
Homology
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BLAST of Cp4.1LG05g01530 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-99
Identity = 193/327 (59.02%), Postives = 241/327 (73.70%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV E                   
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
                      RRRT+VDELNMR IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+  + M ++D   K E+  
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDD--QKDEEMI 242

Query: 241 SKFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNID 297
           S       +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVIMETV+L  S NID
Sbjct: 243 SS-----SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-31
Identity = 91/213 (42.72%), Postives = 118/213 (55.40%), Query Frame = 0 

Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL +A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTE------------------------------R 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TE                              R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-30
Identity = 89/214 (41.59%), Postives = 117/214 (54.67%), Query Frame = 0 

Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTE------------------------------R 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TE                              R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTED 196
           +K HFH L   G  +ILG NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

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BLAST of Cp4.1LG05g01530 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 7.9e-30
Identity = 88/205 (42.93%), Postives = 113/205 (55.12%), Query Frame = 0 

Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     +      VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTE------------------------------R 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TE                              R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 187
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-27
Identity = 89/257 (34.63%), Postives = 130/257 (50.58%), Query Frame = 0 

Query: 51  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE--------- 110
           ++GHGT   +G + A++ G V+RVNKLI V+ LR++Y PE+GD+I+G++ E         
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 ---------------------RRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQAR 170
                                RR+   DEL MR+ F+E D++ AEV+ +  DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVE 230
           S KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H    E+    
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHSS 250

Query: 231 DPINKSEQKGSKFEGNFGNQVQE-RIYTPLE-TRQNICRTANAIRVL-----SILGFIMS 270
             I + E++ S  E  + N+  E   YT L  +R +IC    A R L     SI  F  S
Sbjct: 251 VSITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYES 310

[Close]
BLAST of Cp4.1LG05g01530 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 565 bits (1457), Expect = 2.72e-202
Identity = 297/327 (90.83%), Postives = 297/327 (90.83%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE                   
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
                      RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 297
           KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV
Sbjct: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 300

[Close]
BLAST of Cp4.1LG05g01530 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 561 bits (1446), Expect = 1.29e-200
Identity = 295/327 (90.21%), Postives = 296/327 (90.52%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE                   
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
                      RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 297
           KFEG+FGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSL ISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]
BLAST of Cp4.1LG05g01530 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 558 bits (1438), Expect = 2.14e-199
Identity = 294/327 (89.91%), Postives = 295/327 (90.21%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE                   
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
                      RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 297
           KFEG+FGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSL ISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]
BLAST of Cp4.1LG05g01530 vs. NCBI nr
Match: XP_022931250.1 (exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931253.1 exosome complex component RRP4 homolog [Cucurbita moschata])

HSP 1 Score: 557 bits (1436), Expect = 4.16e-199
Identity = 293/325 (90.15%), Postives = 294/325 (90.46%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE                   
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
                      RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 295
           KFEG+FGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSL ISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]
BLAST of Cp4.1LG05g01530 vs. NCBI nr
Match: XP_022963880.1 (exosome complex component RRP4 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 555 bits (1429), Expect = 1.67e-198
Identity = 280/297 (94.28%), Postives = 289/297 (97.31%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMRTIFEEND 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMR+IFEEND
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMRSIFEEND 120

Query: 121 VICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGC 180
           VICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLI GC
Sbjct: 121 VICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGC 180

Query: 181 NGFIWIGEHVDPTEDMMVEDPINKSEQKGSKFEGNFGNQVQERIYTPLETRQNICRTANA 240
           NGFIWIGEHVDPTEDMM+ED +NKSEQKGSKFEG FGNQVQER+YTPLETRQNICRTANA
Sbjct: 181 NGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANA 240

Query: 241 IRVLSILGFIMSVEVIMETVSLGISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 297
           IRVLS LGFIM+VEVIMETVSL  SLNI+VHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 241 IRVLSNLGFIMTVEVIMETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG 297

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 558 bits (1438), Expect = 1.04e-199
Identity = 294/327 (89.91%), Postives = 295/327 (90.21%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE                   
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
                      RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 297
           KFEG+FGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSL ISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 557 bits (1436), Expect = 2.01e-199
Identity = 293/325 (90.15%), Postives = 294/325 (90.46%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE                   
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
                      RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 295
           KFEG+FGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSL ISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy TrEMBL
Match: A0A6J1HJ86 (exosome complex component RRP4 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 555 bits (1429), Expect = 8.07e-199
Identity = 280/297 (94.28%), Postives = 289/297 (97.31%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMRTIFEEND 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMR+IFEEND
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMRSIFEEND 120

Query: 121 VICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGC 180
           VICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLI GC
Sbjct: 121 VICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGC 180

Query: 181 NGFIWIGEHVDPTEDMMVEDPINKSEQKGSKFEGNFGNQVQERIYTPLETRQNICRTANA 240
           NGFIWIGEHVDPTEDMM+ED +NKSEQKGSKFEG FGNQVQER+YTPLETRQNICRTANA
Sbjct: 181 NGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANA 240

Query: 241 IRVLSILGFIMSVEVIMETVSLGISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 297
           IRVLS LGFIM+VEVIMETVSL  SLNI+VHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 241 IRVLSNLGFIMTVEVIMETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG 297

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy TrEMBL
Match: A0A6J1HUS9 (exosome complex component RRP4 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 540 bits (1391), Expect = 4.99e-193
Identity = 273/297 (91.92%), Postives = 287/297 (96.63%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQ+IRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTERRRTAVDELNMRTIFEEND 120
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTERR+TA DELNMR+IFEEND
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTERRQTADDELNMRSIFEEND 120

Query: 121 VICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGC 180
           VICAEVRGFQHDGLHLQARSQKYGK+ERGQLLTVSPYLVKRRKQHFHHLEQYGIDLI GC
Sbjct: 121 VICAEVRGFQHDGLHLQARSQKYGKVERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGC 180

Query: 181 NGFIWIGEHVDPTEDMMVEDPINKSEQKGSKFEGNFGNQVQERIYTPLETRQNICRTANA 240
           NGFI IGE VDPTEDMM+ED +NKSEQKGSKFEG FGNQVQER+YTPLETRQNICRTANA
Sbjct: 181 NGFIRIGERVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANA 240

Query: 241 IRVLSILGFIMSVEVIMETVSLGISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 297
           IRVLS LGFIM+VEVIMETVSL +SLNI+VHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 241 IRVLSNLGFIMTVEVIMETVSLSLSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG 297

[Close]
BLAST of Cp4.1LG05g01530 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 539 bits (1388), Expect = 4.30e-192
Identity = 280/327 (85.63%), Postives = 289/327 (88.38%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE                   
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
                      RRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 297
           KFEG FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSL  SLNI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

[Close]
BLAST of Cp4.1LG05g01530 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 363.2 bits (931), Expect = 2.0e-100
Identity = 193/327 (59.02%), Postives = 241/327 (73.70%), Query Frame = 0 

Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTE------------------- 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV E                   
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 -----------RRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
                      RRRT+VDELNMR IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+  + M ++D   K E+  
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDD--QKDEEMI 242

Query: 241 SKFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNID 297
           S       +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVIMETV+L  S NID
Sbjct: 243 SS-----SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g01530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVT72.7e-9959.02Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P... [more]
Q8VBV34.2e-3142.72Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1[more]
Q2KID01.2e-3041.59Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1[more]
Q138687.9e-3042.93Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2[more]
Q097042.1e-2734.63Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
BLAST of Cp4.1LG05g01530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023533481.12.72e-20290.83exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348... [more]
KAG6606437.11.29e-20090.21Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub... [more]
XP_022995373.12.14e-19989.91exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom... [more]
XP_022931250.14.16e-19990.15exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exos... [more]
XP_022963880.11.67e-19894.28exosome complex component RRP4 homolog isoform X2 [Cucurbita moschata][more]
BLAST of Cp4.1LG05g01530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K7S01.04e-19989.91exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909... [more]
A0A6J1EXY12.01e-19990.15exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1HJ868.07e-19994.28exosome complex component RRP4 homolog isoform X2 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1HUS94.99e-19391.92exosome complex component RRP4 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1HGD94.30e-19285.63exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
BLAST of Cp4.1LG05g01530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03360.12.0e-10059.02ribosomal RNA processing 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 36..90
e-value: 2.5E-17
score: 64.2
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 102..292
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 10..101
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 86..146
e-value: 7.82848E-18
score: 74.8934
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 44..82
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 149..189
e-value: 1.9E-12
score: 47.4
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 102..292
coord: 10..101
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 85..146
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 149..292

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g01530.1Cp4.1LG05g01530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding