Cp4.1LG05g01240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g01240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	BRCA1-associated RING domain protein 1
Location	Cp4.1LG05: 382765 .. 389534 (+)
RNA-Seq Expression	Cp4.1LG05g01240
Synteny	Cp4.1LG05g01240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCGGCTCTAATGCTAATAATAGCAGTTTTTTTAACCCTTGGGTTCTTCGTTTCCAGAAAATGGGACTTGAACTCTGAAGTGTCCTCTGTGGTATATTTTCGCTTGGCTCCTGTTTCACTCTACTTGTTAGTAATTGACATTTTTTTTTCGTCTAACAATTGTTTTATTGTCGTCTTTTTGATGTAATAACAGCTTGAACTTCTTTGATGAACCTGTGTTGCTTCCTTGCACTCACCTGTTTTGCAAGTATGCTTCCCATTTCGTTGTTTTTCATTCATTTTTCTTATTTTTGCGATTTGCAAGTTCTAAATACGTTATTGACTTTGTTGTAGGGGTTGCATGTCATTTGCTGCCTAGATTGGATCAGTGTGCCCTCTCTGAAAATCAGGATTTGTCGATCGAGGTAGATTTTCCACTAGTCTTAGGCTTCTTGTAATCTTTCGTAAGATTTCTGGTATTTGTTGTTGTTATTGTTTTTTTTTTCCTTTTTTTGAGCAGCGAGGTCTTGAATTATCCCTGATTCTTCATCCTTTATGATTACCCTGTTTCATCTCGACTTTTCTGAATATCTGATTTATTTACAAACAGGGTCATATTCAATACTTGAACATCGCCTTTCTTGATTGATTAGATTACGGGTGATTGTTCGATTTTGTATATGTATATATATATATCTCGAGGGATGTTCGTGATGCCTTTGTCGTATGCTACATTATGCAGACATGAGGCCTGCTCCTTTCATGGACAATATGGTGTCAATCTACAGGAGCCTTGATGCCACATTCTCTACATATATGTCTAAACTAGTCTCATCTGGTACACATTACAAAACTTTTTTTTTTTCGAAAATGAAACTTGAAAGCTACAATTCTAAAGAAAAGGAAGATAACAAGTGCGAAAAAAATCATTATTGTCATATAGTGCATTAATATCACAATTCACATGTTTTAAAATTTGCTTCCTATTTGTAGTATGCTGGGAACAATTTACTTACCGAGAATAAAGAAAGACCAGTTGCAACTTTAATTAAATTTTCAACACGTAGTCTTAGTTCTTACCTCATTTATGTCTTCTGCATCTCATGGTCTGAAGATCATCCATCTTTTAAACTGCCCTAAGTGTCTAATTAACTACAGTAGACGCTGGGGCAGCTGTGGACGAATCATGTTTTGGTCAGTCTATGCGTTACTCTTCCAGCAACTGCAAGGGGTTTGAGGGGTGCGCATGCCTGTTGATTGTAAATGTGAGAATCTTGACATTGAGGGTAGAAAGGGTAGTGGGCGGCATGAAGATTGTAGAATGCCACCTGTGAGTCAGGCAGACCAGTTATCAGCCGGAAGCCCACCACCCTTTGGTGCTGGCAAGGTGTCAGATGACAGTAGTGAAGAGTACCGTGGTCGTGTAAGATTTGATATTTCTCCCTAGTTCCTCCTCCTCCCCTGTCTTTTTCCTGGTCATTTTCCCAGCTTTTGTTGCAAATGTAGGAAGTGCATGCTGGCTTCTAGCATCATTATAAGCTTCTAAACTATCCGTAGCTCTGAAGTGCCATCTTATTGTCGTATAGTGATAATTGCCTCTATATCATGTAGGTGCACATAATTCTGTGTTGTACATATATTTCTGAATTTAGCAATTGATAGTCTAGCCGAGAGGTGGTGTGATTGCCATACAATATCTTAGCGAAGGGTCTTTTCATCCATTTTCTGATAACTTGAAATTTGGAGTGTTTAGGGGTAAAAGCTTGCATGAAAGAAAGGCGTCCTTTGAACGAGGAAGCTTATAAAATTTCTCTTGACAACTATGGGTGCATTGATGGTCCCAAATCTGGCAGGCTGAGGGTTTTAAGCAATGTAAGTTGACTCATTGGATGCATGAAGAGTAATGGTATTGAAATCCTTACTGTCATTGTTACATTAGTAGAGTACAATTTTGCTGGGGGAGCGTGAGAGCATATATTTAAGGTTTCATTATGATTTCATTTATTGGTTAGGGTGCTGTAGTCAATTGCATCTTCTGTTCCGTACTCGTCGTGGTTCAATTGGTGATTTATGACCCGATTATTTCCCATTCCATTTCTACAGGCACCCAAGCTCTTCTTCATTGGCTTGAGTTTCTATTTTACTGGTGATTTTCTATCGGCTTATGAGGAGGATCTTCAAGATTTGGTTATAGCTGCGGGAGGTACCATATTAGAGAAGGACGAATTCCCAGCACCTAGTTGTAATGACCAGACTGCACCAAAGGTGCTGGTTGTATACAATCGATTCTCCTGGAGGATGCAAAGTGGGGGAGGAGGTTTCTCGATTAAATGAGGCCAGAGGGAATAGCTGCAAAGGTTGGAGCCCAAGTCATTGGTCATACATGGCTTGTGGAATCCATTGCAGCGGGTAACTTGCAACCTTCTGTCAGCTGCTAACCTTGATTTCAATCTATATTTTGTGCTGATTCAAGGCTTAGTTATTTATTTAAATGATTAATCTAATCCTATTCGTGAAGTTGGCCCTTGTACAATACAAACTGAAGCTAATCTGAATAGTTAAATCTACATTTCCTAGGCTATCTGTAGTGGGCTCCCAACTTCATTGGATGGCACAAGAAAAATATGCTTATCCTACAAATAAGAAGCACATCTACCGCAAGTCTCTACTTAATCATTAGACTGCAGATGATTTATATGTAATATACTACTGAATCTTCAATATCGCTGCCTCCCTTCTGATGTATGTGGCTTTGTCTAGATAGCAAAAGGCAATAAAAATTACATGGATTTCTTTGATCGTATAGAAAAAAGTTCTGATAATAGCATTGGAGAAGCCCAATAGAAGCTTTTGCTGGACACTTTCCATGAAATATCTAAAATAACCTTGCTATACCTAAAGTATTATCAGGTTGGTCGGATTTTTGAGGCCTGATGAGGAGCAGCTTCCGTTGTTATCAATGCCACGATAAATTCTTGTTTGGATTCTGCACAATCAGCGTTATAAACATACAACTTTGCAGCTACCAGAAAGAAGAGAAAGTTGATGAAGCCCAAGATGGCCAATAATGCGTAATAATGGTCTAGATGAGAGACGTTTAGATTGTCCAAAACCCAATTGCTGTGGTTTTTTTTGGTTATATCAGCCACGGTCTTCAGTAAAAAACTACTCAGAAAATGTCCAATTCCCAAGCTGGTGGTGAAGTAGGAGGTGCCAAGGCTTTTCATGCCTTCTGGTGCTTGGTCATAGAAGAACTCAAGCTTTGCAACTTCTGCAAAGGCATCTGCTATTCCTGTCAAGGCAAATTGAGGAAGAAGAATGAAAATGGAGAGTGGAACCTGGTCTTCTTTGCGAAAAATCTTGTTTTCTCTAACGGTTTTCAGTCTCATCCTTTCAGTAATACATGCTGCGACCATGATAGTAATTTGCAACACTAGTCCAACACCCATCCTTTGGAGCAATGTGATCCCTCTAGGGTTTTTGGTGAATCGACGAGCAAATGGAACGAAGAAACAGTCATAGATGACAATGCTGATCAGCATAAAGATTGTTACAAAAACTGCAAGGCTTGCTGCAGGAATTTCAAAATGGGGACCCAAGCTTCTGTCAAGGGTGGCGCCTTGTTTCACAAATAGTGTACCCACTTGTGAAACTAGTGCACTTGGAATGAATGTCGCTGCCAGAATGGGTATCATTTTAATCATTTGCTTTGTTTCTTCAACTTGAGTAACAGTGCATGGTGTCCTTGCTGAGCTCGTCTCACCCTGAACGGCTGCTTTGTCTAGGAATCTGCAGGTAATGGAGTTCTTCTAATCAAGAAATGAGGTTGACCATAATCAGCTTGGAAACTTGTATTTACATTTAGTTCGATAGAATTACCTTAATGAATGAGTATGATCAATCCTATATTTTTTTGAATTAGTGTAATCTTCCAAATTAAGCTCATGAAGCTCCTTTGTATCATCAGGAATTGGCAGTTTCCGGTTCCCCACAGCAGCCACAATCACCTTAGCTATCCTGCTGAAAGGGCTCCCTGAAGGCAATTTGTGCCTATAAAATGGAGTGCCAATCAGAAATACAAGCACAGAGATTGAAAACCCGACAGTTGGAATCCCATATCCAAGGCCCCAACCTACGGTGTCTTGGATGTAAACCAAGAAAGTGTTTGAGAACAGAGTGCCAAAGAAAATGCTGAACATCCACCAATTGAAAAAGGAGAGCTTTTGTGTTCTTTCCTTGGGTTCAAAATCATCAAACTGGTCAGCTCCCATTGTCGAAATGTTGGGTTTGGTTCCACCAGTTCCAATTGCGACTATGTACAATGCACAGAAGAAAATGCCTACTTGAAGAGGCGAGGCTTGTTTGTCACAATGACCTTCTTTGGCCTCATCGCCGCATGATGGTGGTCTCAGGGCTGGCAATGAAACTGACAAGGTTAGCAGGACCATTCCCTGTATGACACAAGTTGGATGAGTCTAACATGTAAGTACAGACTCAAATTCCCTCCTCCATACGTTTATTTCTCTCTTTGAACTTATTCTACTGCTTCTAATGTTTCATCGAAACCAAAAGACAACCCAATGGAGATGAGTTTAGATACCATTAAAATATAGCTCATTCATAGAATGTTTGAATCTTACAATGAGGTAAATTGCAGAAGATGCGACAAAGGTCCAGTATCGACCGAGATAAGCGTCAGCAATGTAGGCACCTATAATTGGTGTCATCCACACAGTTCCAATCCAGTTGGTGACATTATTGGCAGATGTCACAATGTCTTGATGAAGTTTGTCGGTCATATACACCACCAAGTTTGTTGCAATCCCATAGTATGCCATCCTCTCAAACACCTCGAACACTACATGAAACAAACATGTTGTGAATATTAACCACTTCTTTCTCAACCCAAGAACTCAAAGAACAAAACCTGATATGGGTTTCTGAATAAGGTAGTTTCTAAATGTTATTGCCTTTTGTGAAGTTATTCTCTTGATTCCCATGATATGGAACCAAGGACTTATTAATCTTAGTTCTTTAAGAAACCAACTCTTTCTTTCTTTGATGCTCCTATGAAGGATATCTTCATGCCAAATATTGAAAGACTGAACTCATTACTTGTATTTTTGAAAGGAGAGCTTGCAGGTGTGCAGGCTACCAGTTAGGCAAAGAAAAAAAAAGAAAAAAAAAAAGAGGAAAGCTTGTTGAAGATTACCAACAATGAAGGAACAGGCTCTCCATCTCCCAGTCTTCGATCTGAAAATAGGATCACCTTTGAGACTCACGGTTCCATCTTGTGTATAATCATCTCTTCCGTCTGCGGAGCCTTTCTCTTCCACCTGTGCCATTATAGTTAACAGACAGAGGAGAAAATGAACTTTCTACTGGCAAATCGTTGAAATTCATGTGAGTTCTATTAGCTTTTTATATAGATAAAATAAAATACCCACAAACACACAAAATAAAAATAAAAATAAATAATAGGAAAATCACCACCACAGACGTATTTATTGGGAAATTAAATAATATTACGGCAAAGTATGTAAAGTTAGCTAGGGATGCAGGCTTATGGTTCAGAAACTTTAGGTTCATGCCATTTAGGATTGAAAGTTTTAAGTTTTCGTAGTCTAAATTAGAAATTGCTTTGCAGATTTACAATTTTAGTCTAAAAGGTGGATTCAATAGGTAAGCTTTTGTAGTTAGTAGGATCATGAATCCTAAAGTATTAGCAAGCAAGTCCATTATATTAAACGAAACCATGGCTTAGCCAACCAAGTCATATTTGTTTAAGAATTTTTTTTCGTTGTTTTGTACAATTTGATATGCCCGTAGCTCCTCATTGGGTGCTTGTTTCTCTCCAATGTGAAATTGCTGACATGATACCAACTTAACATTATGTGTGCTTCTCTTTTTCAGTCACTTTCACTGTTTGACTCACTCATTATTTTTTAGATGTTTACGATTTGAAGGAAAATGTAATTAATATGAAAGAACCGTTCCAAGCAATGCATAGCACAAGCTTTTCCTGCTTGTTGGTATCTTGAAATCGGCAGAAGATGCTGATTTGAGATTAGCATGTTGTCTTTCATGAACTCTATTTTACCAACTTTTACCATCATATTATGTTCCTTTTTTACTTTTCTTTTTCTTAGTTTAATATGTATGAAACTTTCTAAAATGATTAATGACAGTAGAAAATAAGGATTAAAGGACTTTCTACTCTTCCAAAAAAAAAAAAAATATTAAAAGAGTATTTTTGTAAAATTTGTTCGTCACGAGAAGGAAATGGCAAACTGCCAATTTGAAGCAAAGAAATGCTTTCTAATTGCAGTTTTACTCTTCAACCAATCCTTAATTGTTTCTTGTCATGCCTGGAAGGGTTAGGTTCTTTTTGTTTGTCCAACTGCATCAACACACAAGGATTGTACCAAGTTTAGTTAAACAATAAATTGCCTAAATTTAGGCAAAGAGATGAAAAGGGTATGCTCTGCAAGCTACAAGTCTCAGCTCTCGAGGTCCCATCTAATAGAAAAAGGATTGATATGGACAGTGCTTACAGACAAAAACAAAAGTCATCAAGACAAGATTAACTTTGTGAATTTCACCCAATGGAATCAGAGAAGCATAGAAAGCACCAATGGGCTTAACGGGTTCTTTGCAGATATGATTATTAAAACCAAAAATCTGATTTTGAGATATACTCGAGAATGGGTTTTAGCCATTTAAATTCAAGAACCTATTGAAGGAAGGCCAGACAAAGTTTACTAATTGTGGTGTATATTCAATATTGGCA

mRNA sequence

TGGCGGCTCTAATGCTAATAATAGCAGTTTTTTTAACCCTTGGGTTCTTCGTTTCCAGAAAATGGGACTTGAACTCTGAAGTGTCCTCTGTGGTATATTTTCGCTTGGCTCCTGTTTCACTCTACTTCTTGAACTTCTTTGATGAACCTGTGTTGCTTCCTTGCACTCACCTGTTTTGCAATTCTAAATACGTTATTGACTTTGTTGTAGGGGTTGCATGTCATTTGCTGCCTAGATTGGATCAGTGTGCCCTCTCTGAAAATCAGGATTTGTCGATCGAGATTACGGACATGAGGCCTGCTCCTTTCATGGACAATATGGTGTCAATCTACAGGAGCCTTGATGCCACATTCTCTACATATATGTCTAAACTAGTCTCATCTGTAGACGCTGGGGCAGCTGTGGACGAATCATGTTTTGGTCAGTCTATGCGTTACTCTTCCAGCAACTGCAAGGGGTTTGAGGGGTGCGCATGCCTGTTGATTGTAAATAATCTTGACATTGAGGGTAGAAAGGGTAGTGGGCGGCATGAAGATTGTAGAATGCCACCTGTGAGTCAGGCAGACCAGTTATCAGCCGGAAGCCCACCACCCTTTGGTGCTGGCAAGGTGTCAGATGACAGTAGTGAAGAGTACCGTGGTCGTTGTTTAGGGGTAAAAGCTTGCATGAAAGAAAGGCGTCCTTTGAACGAGGAAGCTTATAAAATTTCTCTTGACAACTATGGGTGCATTGATGGTCCCAAATCTGGCAGGCTGAGGGTTTTAAGCAATGGTGCTGTAGTCAATTGCATCTTCTGTTCCGTACTCGTCGTGGTTCAATTGGCACCCAAGCTCTTCTTCATTGGCTTGAGTTTCTATTTTACTGGTGATTTTCTATCGGCTTATGAGGAGGATCTTCAAGATTTGGTTATAGCTGCGGGAGGTACCATATTAGAGAAGGACGAATTCCCAGCACCTAGTTGTAATGACCAGACTGCACCAAAGGTGCTGGTTGTATACAATCGATTCTCCTGGAGGATGCAAAGTGGGGGAGGAGAGGGAATAGCTGCAAAGGTTGGAGCCCAAGTCATTGGTCATACATGGCTTGTGGAATCCATTGCAGCGGCCACGGTCTTCAGTAAAAAACTACTCAGAAAATGTCCAATTCCCAAGCTGGTGGTGAAAAGATGCGACAAAGGTCCAGTATCGACCGAGATAAGCGTCAGCAATGTAGGCACCTATAATTGGTGTCATCCACACAGTTCCAATCCAGTTGGTGACATTATTGGCAGATGTCACAATGTCTTGATGAAGTTTGTCGGTCATATACACCACCAAGTTTGTTGCAATCCCATAGTATGCCATCCTCTCAAACACCTCGAACACTACATGAAACAAACATGTTGTGAATATTAACCACTTCTTTCTCAACCCAAGAACTCAAAGAACAAAACCTGATATGGGTTTCTGAATAAGGTAGTTTCTAAATGTTATTGCCTTTTGTGAAGTTATTCTCTTGATTCCCATGATATGGAACCAAGGACTTATTAATCTTAGTTCTTTAAGAAACCAACTCTTTCTTTCTTTGATGCTCCTATGAAGGATATCTTCATGCCAAATATTGAAAGACTGAACTCATTACTTGTATTTTTGAAAGGAGAGCTTGCAGGTGTGCAGGCTACCAGTTAGGCAAAGAAAAAAAAAGAAAAAAAAAAAGAGGAAAGCTTGTTGAAGATTACCAACAATGAAGGAACAGGCTCTCCATCTCCCAGTCTTCGATCTGAAAATAGGATCACCTTTGAGACTCACGGTTCCATCTTGTGTATAATCATCTCTTCCGTCTGCGGAGCCTTTCTCTTCCACCTGTGCCATTATAGTTAACAGACAGAGGAGAAAATGAACTTTCTACTGGCAAATCGTTGAAATTCATGTTCTTTTTGTTTGTCCAACTGCATCAACACACAAGGATTGTACCAAGTTTAGTTAAACAATAAATTGCCTAAATTTAGGCAAAGAGATGAAAAGGGTATGCTCTGCAAGCTACAAGTCTCAGCTCTCGAGGTCCCATCTAATAGAAAAAGGATTGATATGGACAGTGCTTACAGACAAAAACAAAAGTCATCAAGACAAGATTAACTTTGTGAATTTCACCCAATGGAATCAGAGAAGCATAGAAAGCACCAATGGGCTTAACGGGTTCTTTGCAGATATGATTATTAAAACCAAAAATCTGATTTTGAGATATACTCGAGAATGGGTTTTAGCCATTTAAATTCAAGAACCTATTGAAGGAAGGCCAGACAAAGTTTACTAATTGTGGTGTATATTCAATATTGGCA

Coding sequence (CDS)

ATGCTAATAATAGCAGTTTTTTTAACCCTTGGGTTCTTCGTTTCCAGAAAATGGGACTTGAACTCTGAAGTGTCCTCTGTGGTATATTTTCGCTTGGCTCCTGTTTCACTCTACTTCTTGAACTTCTTTGATGAACCTGTGTTGCTTCCTTGCACTCACCTGTTTTGCAATTCTAAATACGTTATTGACTTTGTTGTAGGGGTTGCATGTCATTTGCTGCCTAGATTGGATCAGTGTGCCCTCTCTGAAAATCAGGATTTGTCGATCGAGATTACGGACATGAGGCCTGCTCCTTTCATGGACAATATGGTGTCAATCTACAGGAGCCTTGATGCCACATTCTCTACATATATGTCTAAACTAGTCTCATCTGTAGACGCTGGGGCAGCTGTGGACGAATCATGTTTTGGTCAGTCTATGCGTTACTCTTCCAGCAACTGCAAGGGGTTTGAGGGGTGCGCATGCCTGTTGATTGTAAATAATCTTGACATTGAGGGTAGAAAGGGTAGTGGGCGGCATGAAGATTGTAGAATGCCACCTGTGAGTCAGGCAGACCAGTTATCAGCCGGAAGCCCACCACCCTTTGGTGCTGGCAAGGTGTCAGATGACAGTAGTGAAGAGTACCGTGGTCGTTGTTTAGGGGTAAAAGCTTGCATGAAAGAAAGGCGTCCTTTGAACGAGGAAGCTTATAAAATTTCTCTTGACAACTATGGGTGCATTGATGGTCCCAAATCTGGCAGGCTGAGGGTTTTAAGCAATGGTGCTGTAGTCAATTGCATCTTCTGTTCCGTACTCGTCGTGGTTCAATTGGCACCCAAGCTCTTCTTCATTGGCTTGAGTTTCTATTTTACTGGTGATTTTCTATCGGCTTATGAGGAGGATCTTCAAGATTTGGTTATAGCTGCGGGAGGTACCATATTAGAGAAGGACGAATTCCCAGCACCTAGTTGTAATGACCAGACTGCACCAAAGGTGCTGGTTGTATACAATCGATTCTCCTGGAGGATGCAAAGTGGGGGAGGAGAGGGAATAGCTGCAAAGGTTGGAGCCCAAGTCATTGGTCATACATGGCTTGTGGAATCCATTGCAGCGGCCACGGTCTTCAGTAAAAAACTACTCAGAAAATGTCCAATTCCCAAGCTGGTGGTGAAAAGATGCGACAAAGGTCCAGTATCGACCGAGATAAGCGTCAGCAATGTAGGCACCTATAATTGGTGTCATCCACACAGTTCCAATCCAGTTGGTGACATTATTGGCAGATGTCACAATGTCTTGATGAAGTTTGTCGGTCATATACACCACCAAGTTTGTTGCAATCCCATAGTATGCCATCCTCTCAAACACCTCGAACACTACATGAAACAAACATGTTGTGAATATTAA

Protein sequence

MLIIAVFLTLGFFVSRKWDLNSEVSSVVYFRLAPVSLYFLNFFDEPVLLPCTHLFCNSKYVIDFVVGVACHLLPRLDQCALSENQDLSIEITDMRPAPFMDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGCACLLIVNNLDIEGRKGSGRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRGRCLGVKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPKLFFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYNRFSWRMQSGGGEGIAAKVGAQVIGHTWLVESIAAATVFSKKLLRKCPIPKLVVKRCDKGPVSTEISVSNVGTYNWCHPHSSNPVGDIIGRCHNVLMKFVGHIHHQVCCNPIVCHPLKHLEHYMKQTCCEY

Homology

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BLAST of Cp4.1LG05g01240 vs. ExPASy Swiss-Prot
Match: F4I443 (BRCA1-associated RING domain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BARD1 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-21
Identity = 66/166 (39.76%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 215 VKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPKL 274
           +KA +K  +P++EE ++I +D  GC DGPK+ RLR  +N                  PKL
Sbjct: 560 MKASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETN-----------------KPKL 619

Query: 275 FFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILE-KDEFPAPS---CNDQTAPKVLVVYN 334
            F GL FYF GDF   Y+EDLQ+LV  AGGTIL  +DE  A S    NDQ +  + VVYN
Sbjct: 620 -FEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSI-VVYN 679

Query: 335 -------------RFSWRMQSGGGEGIAAKVGAQVIGHTWLVESIA 364
                           W+ ++   E +A++ G++++GHTW++ESIA
Sbjct: 680 IDPPHGCALGEEVTIIWQ-RANDAEALASQTGSRLVGHTWVLESIA 705

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BLAST of Cp4.1LG05g01240 vs. ExPASy Swiss-Prot
Match: Q8RXD4 (Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 GN=BRCA1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-15
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 215 VKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPKL 274
           +KACMK  + ++EE Y+I++D +G  +GP  GR R L                    PKL
Sbjct: 802 IKACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKK-----------------KPKL 861

Query: 275 FFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYN---- 334
            F GL FY  GDF  AY+  LQDL++AAGGTIL +     P  +D      +VV++    
Sbjct: 862 -FTGLKFYIMGDFELAYKGYLQDLIVAAGGTILRR----RPVSSDDNEASTIVVFSVEPS 921

Query: 335 -RFSWRMQSGGGEGIAAKVGAQVIGHTWLVESIAAATV 368
            + +   +    E +A    A+    +W+++SIA   +
Sbjct: 922 KKKTLTQRRSDAEALAKSARARAASSSWVLDSIAGCQI 937

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BLAST of Cp4.1LG05g01240 vs. NCBI nr
Match: KAG7036301.1 (BRCA1-associated RING domain protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 403 bits (1036), Expect = 1.77e-134
Identity = 236/389 (60.67%), Postives = 247/389 (63.50%), Query Frame = 0


Query: 40  LNFFDEPVLLPCTHLFC-------------------NSKYVIDFVVGVACHLLPRLDQCA 99
           LNFFDEPVLLPCTHLFC                   +SKYV+DFVVGVACHLLPRLDQCA
Sbjct: 17  LNFFDEPVLLPCTHLFCKYASHFVVFHSLFLLLRFASSKYVLDFVVGVACHLLPRLDQCA 76

Query: 100 LSENQDLSIEITDMRPAPFMDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSM 159
           LSENQDLSIE                Y   +         + + ++AGAAVDESCFGQSM
Sbjct: 77  LSENQDLSIE----------------YAGNNLPTENKERPVATLIEAGAAVDESCFGQSM 136

Query: 160 RYSSSNCKGFEGCACLLIVN--NLDIEGRKGSGRHEDCRMPPVSQADQLSAGSPPPFGAG 219
           RYSSS CKGFEGC+  +     NLDIE RKGSGRHEDCR PPVSQA QLSAGSPPPFGAG
Sbjct: 137 RYSSSTCKGFEGCSMPVDCKCENLDIEDRKGSGRHEDCRTPPVSQAHQLSAGSPPPFGAG 196

Query: 220 KVSDDSSEEYRGRCL-------------------------------GVKACMKERRPLNE 279
           KVSDDSSEEYRGR                                  VKACMKERRPLNE
Sbjct: 197 KVSDDSSEEYRGRVRFDISPYFLLLPSFFCSEVPSYCRIVIIASISWVKACMKERRPLNE 256

Query: 280 EAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPKLFFIGLSFYFTGDF 339
           EAY+ISLDNYGCIDGPKSG LRVLSN                 APKLFFIGLSFYFTGDF
Sbjct: 257 EAYEISLDNYGCIDGPKSGWLRVLSN-----------------APKLFFIGLSFYFTGDF 316

Query: 340 LSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYNRFSWRMQSGGG------ 357
            SAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYN     + S GG      
Sbjct: 317 PSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYN-----LDSPGGCKVGEE 367

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BLAST of Cp4.1LG05g01240 vs. NCBI nr
Match: KAG6606361.1 (Rho GDP-dissociation inhibitor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317 bits (811), Expect = 7.91e-99
Identity = 202/372 (54.30%), Postives = 213/372 (57.26%), Query Frame = 0


Query: 7   FLTLGFFVSRKWDLNSEVSSVVYFRLAPVSLYFLNFFDEPVLLPCTHLFCNSKYVIDFVV 66
           FLTLGFF+SRKWDLNS+          P+ L   NFFDEPVLLPCTHLFC          
Sbjct: 228 FLTLGFFISRKWDLNSK---------CPLCL---NFFDEPVLLPCTHLFCKG-------- 287

Query: 67  GVACHLLPRLDQCALSENQDLSIEITDMRPAPFMDNMVSIYRSLDATFSTYMSKLVSSVD 126
                       C                  PF   + SI                 +VD
Sbjct: 288 ------------CM-----------------PFAAQIGSI-----------------TVD 347

Query: 127 AGAAVDESCFGQSMRYSSSNCKGFEGCACLLIVN--NLDIEGRKGSGRHEDCRMPPVSQA 186
           AGAAVDESCFGQSMRYSSS CKGFEGC+  +     NLDIE RKGSGRHEDCR PPVSQA
Sbjct: 348 AGAAVDESCFGQSMRYSSSTCKGFEGCSMPVDCKCENLDIEDRKGSGRHEDCRTPPVSQA 407

Query: 187 DQLSAGSPPPFGAGKVSDDSSEEYRGRCLGVKACMKERRPLNEEAYKISLDNYGCIDGPK 246
            Q+      P+                   VKACMKERRPLNEEAY+ISLDNYGCIDGPK
Sbjct: 408 HQV------PWS-----------------WVKACMKERRPLNEEAYEISLDNYGCIDGPK 467

Query: 247 SGRLRVLSNGAVVNCIFCSVLVVVQLAPKLFFIGLSFYFTGDFLSAYEEDLQDLVIAAGG 306
           SG LRVLSN                 APKLFFIGLSFYFTGDF SAYEEDLQDLVIAAGG
Sbjct: 468 SGWLRVLSN-----------------APKLFFIGLSFYFTGDFPSAYEEDLQDLVIAAGG 488

Query: 307 TILEKDEFPAPSCNDQTAPKVLVVYNRFSWRMQSGGG-----------------EGIAAK 357
           TILEKDEFPAPSCNDQTAPKVLVVYN     + S GG                 EGIAAK
Sbjct: 528 TILEKDEFPAPSCNDQTAPKVLVVYN-----LDSPGGCKVGEEVLILWQRLNETEGIAAK 488

[Close]

BLAST of Cp4.1LG05g01240 vs. NCBI nr
Match: XP_022996429.1 (BRCA1-associated RING domain protein 1-like [Cucurbita maxima])

HSP 1 Score: 228 bits (582), Expect = 3.19e-69
Identity = 149/288 (51.74%), Postives = 152/288 (52.78%), Query Frame = 0


Query: 94  MRPAPFMDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGC 153
           MRPAPFMD MVSI RSLDATFSTYMSKLVS                              
Sbjct: 1   MRPAPFMDKMVSICRSLDATFSTYMSKLVSP----------------------------- 60

Query: 154 ACLLIVNNLDIEGRKGSGRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRGRCL 213
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 214 GVKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPK 273
           GVKACMKERRPLNEEAY+ISLD+YGCIDGPKSGRLRVLSN                 APK
Sbjct: 121 GVKACMKERRPLNEEAYEISLDHYGCIDGPKSGRLRVLSN-----------------APK 176

Query: 274 LFFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYNRFS 333
           LF IGLSFYFTGDF SAYEEDLQDLV AAGGTILEKDEFPAPSCNDQTAPKVLVVYN   
Sbjct: 181 LF-IGLSFYFTGDFPSAYEEDLQDLVKAAGGTILEKDEFPAPSCNDQTAPKVLVVYN--- 176

Query: 334 WRMQSGGG-----------------EGIAAKVGAQVIGHTWLVESIAA 364
             + S GG                 EGIAAKVGAQVIGHTWLVESIAA
Sbjct: 241 --LDSPGGCKVGVEVLILWQRLNEAEGIAAKVGAQVIGHTWLVESIAA 176

[Close]

BLAST of Cp4.1LG05g01240 vs. NCBI nr
Match: XP_038887493.1 (BRCA1-associated RING domain protein 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 241 bits (616), Expect = 1.52e-68
Identity = 211/668 (31.59%), Postives = 235/668 (35.18%), Query Frame = 0


Query: 40  LNFFDEPVLLPCTHLFCNSKYVIDFVVGVACHLLPRLDQCALSENQDLSIEITDMRPAPF 99
           LNFFD+PVLLPC HLFC S        G  C L                    DMRPAPF
Sbjct: 38  LNFFDDPVLLPCNHLFCKSCMPFAAQFGSVCPLCKA------------GFVDRDMRPAPF 97

Query: 100 MDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGCACLLIV 159
           MD MVSIYRSLDATFST MSKLVS+ D GA V++S FGQS+ Y  +NCK FEGC+  +  
Sbjct: 98  MDKMVSIYRSLDATFSTNMSKLVST-DVGADVEQSRFGQSVSYVVNNCKEFEGCSKPVDC 157

Query: 160 N--NLDIEGRKGS-GRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRG------ 219
              NLDI+GRKG  GR EDCRMPPVSQADQLSAGSPP FG GKVSDDSS+E RG      
Sbjct: 158 KRENLDIDGRKGKYGRSEDCRMPPVSQADQLSAGSPPYFGDGKVSDDSSDECRGHGSKNT 217

Query: 220 ------------------RCLG-------------------------------------- 279
                             +C+                                       
Sbjct: 218 SDRISVITNADDNKLQLSKCMSSASEEAGHLRDLKRQKLNYDQLKLGISSADQTHPPVSE 277

Query: 280 ------------------------------------------------------------ 339
                                                                       
Sbjct: 278 PGNSETSNSEMEHKTQVTVASSMPLADADAIVRNVKCAFCQSSKVTEDTGPFLHYMNGSL 337

Query: 340 ------------------------------------------------------------ 365
                                                                       
Sbjct: 338 VNGVEAANPNVIHVHKLCVDWAPQAYYQGDDVHNLKAEVARGSKLKCCKCGLKGAALGCY 397

[Close]

BLAST of Cp4.1LG05g01240 vs. NCBI nr
Match: XP_022967204.1 (BRCA1-associated RING domain protein 1 [Cucurbita maxima])

HSP 1 Score: 241 bits (616), Expect = 1.64e-68
Identity = 216/670 (32.24%), Postives = 236/670 (35.22%), Query Frame = 0


Query: 40  LNFFDEPVLLPCTHLFCNSKYVIDFVVGVACHLLPRLDQCALSENQDLSIEITDMRPAPF 99
           L+FFDEPVLLPC HLFC         +G  C L                    D+RPAPF
Sbjct: 38  LSFFDEPVLLPCDHLFCKGCMPFASQIGSECPLCKA------------GFVDRDLRPAPF 97

Query: 100 MDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGCACLLIV 159
           MD MVSIYRSLDATF+T MSKLVS+VD GA V++S F QS   +  NCK F+GC+     
Sbjct: 98  MDKMVSIYRSLDATFATNMSKLVSAVDVGATVEKSRFVQSTPRAGPNCKEFQGCSMPADC 157

Query: 160 N--NLDIEGRKGS-GRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRG------ 219
              NLDIE RKGS GRHEDCRMPPVSQ DQLSAGSPPPFG GKVSDDSS+EYRG      
Sbjct: 158 KCENLDIESRKGSYGRHEDCRMPPVSQTDQLSAGSPPPFGDGKVSDDSSDEYRGHGSKNA 217

Query: 220 ------------------------------------------------------------ 279
                                                                       
Sbjct: 218 SDRRSVIANADDKKLQLSKCTSSVSEEEGHLRDHKRQKLDYGQLKSGSSSVDQTHPPASE 277

Query: 280 ------------------------------------------------------------ 339
                                                                       
Sbjct: 278 LGNSETSNSEMEQKSQVTIASNLPLDDAEDAIVRNAKCAFCQSSKVTEDTGPVLHYLNGS 337

Query: 340 -------------------------------------------------RC------LG- 364
                                                            +C      LG 
Sbjct: 338 LVVGVEAENPNVIHAHKLCVDWAPQAYYQGDDVHNLKSEVARGSKLKCSKCGLKGAALGC 397

[Close]

BLAST of Cp4.1LG05g01240 vs. ExPASy TrEMBL
Match: A0A6J1K8P6 (BRCA1-associated RING domain protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111491656 PE=4 SV=1)

HSP 1 Score: 228 bits (582), Expect = 1.54e-69
Identity = 149/288 (51.74%), Postives = 152/288 (52.78%), Query Frame = 0


Query: 94  MRPAPFMDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGC 153
           MRPAPFMD MVSI RSLDATFSTYMSKLVS                              
Sbjct: 1   MRPAPFMDKMVSICRSLDATFSTYMSKLVSP----------------------------- 60

Query: 154 ACLLIVNNLDIEGRKGSGRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRGRCL 213
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 214 GVKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPK 273
           GVKACMKERRPLNEEAY+ISLD+YGCIDGPKSGRLRVLSN                 APK
Sbjct: 121 GVKACMKERRPLNEEAYEISLDHYGCIDGPKSGRLRVLSN-----------------APK 176

Query: 274 LFFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYNRFS 333
           LF IGLSFYFTGDF SAYEEDLQDLV AAGGTILEKDEFPAPSCNDQTAPKVLVVYN   
Sbjct: 181 LF-IGLSFYFTGDFPSAYEEDLQDLVKAAGGTILEKDEFPAPSCNDQTAPKVLVVYN--- 176

Query: 334 WRMQSGGG-----------------EGIAAKVGAQVIGHTWLVESIAA 364
             + S GG                 EGIAAKVGAQVIGHTWLVESIAA
Sbjct: 241 --LDSPGGCKVGVEVLILWQRLNEAEGIAAKVGAQVIGHTWLVESIAA 176

[Close]

BLAST of Cp4.1LG05g01240 vs. ExPASy TrEMBL
Match: A0A6J1HW43 (BRCA1-associated RING domain protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111466809 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 7.94e-69
Identity = 216/670 (32.24%), Postives = 236/670 (35.22%), Query Frame = 0


Query: 40  LNFFDEPVLLPCTHLFCNSKYVIDFVVGVACHLLPRLDQCALSENQDLSIEITDMRPAPF 99
           L+FFDEPVLLPC HLFC         +G  C L                    D+RPAPF
Sbjct: 38  LSFFDEPVLLPCDHLFCKGCMPFASQIGSECPLCKA------------GFVDRDLRPAPF 97

Query: 100 MDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGCACLLIV 159
           MD MVSIYRSLDATF+T MSKLVS+VD GA V++S F QS   +  NCK F+GC+     
Sbjct: 98  MDKMVSIYRSLDATFATNMSKLVSAVDVGATVEKSRFVQSTPRAGPNCKEFQGCSMPADC 157

Query: 160 N--NLDIEGRKGS-GRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRG------ 219
              NLDIE RKGS GRHEDCRMPPVSQ DQLSAGSPPPFG GKVSDDSS+EYRG      
Sbjct: 158 KCENLDIESRKGSYGRHEDCRMPPVSQTDQLSAGSPPPFGDGKVSDDSSDEYRGHGSKNA 217

Query: 220 ------------------------------------------------------------ 279
                                                                       
Sbjct: 218 SDRRSVIANADDKKLQLSKCTSSVSEEEGHLRDHKRQKLDYGQLKSGSSSVDQTHPPASE 277

Query: 280 ------------------------------------------------------------ 339
                                                                       
Sbjct: 278 LGNSETSNSEMEQKSQVTIASNLPLDDAEDAIVRNAKCAFCQSSKVTEDTGPVLHYLNGS 337

Query: 340 -------------------------------------------------RC------LG- 364
                                                            +C      LG 
Sbjct: 338 LVVGVEAENPNVIHAHKLCVDWAPQAYYQGDDVHNLKSEVARGSKLKCSKCGLKGAALGC 397

[Close]

BLAST of Cp4.1LG05g01240 vs. ExPASy TrEMBL
Match: A0A0A0LDW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608160 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 9.91e-69
Identity = 210/667 (31.48%), Postives = 235/667 (35.23%), Query Frame = 0


Query: 40  LNFFDEPVLLPCTHLFCNSKYVIDFVVGVACHLLPRLDQCALSENQDLSIEITDMRPAPF 99
           LNFFD+P+LLPC HLFC S       +G  C L                    DMRPAPF
Sbjct: 34  LNFFDDPILLPCNHLFCKSCMPFAAQIGSVCPLCKA------------GFVDRDMRPAPF 93

Query: 100 MDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGCACLLIV 159
           MD MVSIYRSLDATFST MSKLVS+VD GAAV++S FGQS+ Y ++NCK FEGC+  +  
Sbjct: 94  MDKMVSIYRSLDATFSTNMSKLVSTVDVGAAVEQSRFGQSVSYVANNCKEFEGCSMPVDS 153

Query: 160 N--NLDIEGRKGS-GRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRG------ 219
              +L IEGRKG  GRHEDC MPPVSQ DQLS+GSPP FG GKVSDDSS+EYRG      
Sbjct: 154 KRQHLGIEGRKGEHGRHEDCVMPPVSQTDQLSSGSPPSFGDGKVSDDSSDEYRGHGSKNT 213

Query: 220 ------------------------------------------------------------ 279
                                                                       
Sbjct: 214 SDWISVITSADDKKLQLSKCTSSASEEEGHLRDLKRQKLNYGQLKFRISSADQTHPPVSE 273

Query: 280 ------------------------------------------------------------ 339
                                                                       
Sbjct: 274 PGNSETSNSGMEHKSQVTNASSMPLADADDTIVRNVKCAFCQSSKVTEDTGAVLHYMNGR 333

Query: 340 -------------------------------------------------RC------LG- 363
                                                            +C      LG 
Sbjct: 334 LVDGVEAASPNVIHVHKLCVEWAPQAYFQGDDVHNLKAEVARGSKLKCSKCGLKGAALGC 393

[Close]

BLAST of Cp4.1LG05g01240 vs. ExPASy TrEMBL
Match: A0A6J1HI78 (BRCA1-associated RING domain protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111463879 PE=4 SV=1)

HSP 1 Score: 239 bits (611), Expect = 4.20e-68
Identity = 216/670 (32.24%), Postives = 235/670 (35.07%), Query Frame = 0


Query: 40  LNFFDEPVLLPCTHLFCNSKYVIDFVVGVACHLLPRLDQCALSENQDLSIEITDMRPAPF 99
           L+FFDEPVLLPC HLFC S       +G  C L                    D+RPAPF
Sbjct: 38  LSFFDEPVLLPCDHLFCKSCMPFASQIGSECPLCKA------------GFVDRDLRPAPF 97

Query: 100 MDNMVSIYRSLDATFSTYMSKLVSSVDAGAAVDESCFGQSMRYSSSNCKGFEGCACLLIV 159
           MD MVSIYRSLDATF+T MSKLVS+VD GA V++S F QS   +  NCK F+GC+     
Sbjct: 98  MDKMVSIYRSLDATFATNMSKLVSAVDVGATVEKSRFVQSTPCAGPNCKEFQGCSMPADC 157

Query: 160 N--NLDIEGRKGS-GRHEDCRMPPVSQADQLSAGSPPPFGAGKVSDDSSEEYRG------ 219
              NLDIE RKGS  RHEDCRMPPVSQ DQLSAGSPPPFG GKVSDDSS+EYRG      
Sbjct: 158 KCENLDIESRKGSYRRHEDCRMPPVSQTDQLSAGSPPPFGDGKVSDDSSDEYRGHGSKND 217

Query: 220 ------------------------------------------------------------ 279
                                                                       
Sbjct: 218 SDRRSVIANADDKKLQLSKCTSSVSEEEGHLRDPKRQKLDYGQLKSGSSSVDQTHPPASE 277

Query: 280 ------------------------------------------------------------ 339
                                                                       
Sbjct: 278 LGNSETSNSEMEHKSQVTIASNLPLADAEDAIVRNAKCAFCQSSKVTEDTGPVLHYLNGS 337

Query: 340 -------------------------------------------------RC------LG- 364
                                                            +C      LG 
Sbjct: 338 LVVGVEAANPNVIHAHKLCVDWAPQAYYQGDDVHNLKSEVARGSKLKCSKCGLKGAALGC 397

[Close]

BLAST of Cp4.1LG05g01240 vs. ExPASy TrEMBL
Match: A0A6J1ESS5 (BRCA1-associated RING domain protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437392 PE=4 SV=1)

HSP 1 Score: 219 bits (558), Expect = 3.90e-66
Identity = 122/168 (72.62%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 214 GVKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPK 273
           GVKACMKERRPLNEEAY+ISLDNYGCIDGPKSG LRVLSN                 APK
Sbjct: 18  GVKACMKERRPLNEEAYEISLDNYGCIDGPKSGWLRVLSN-----------------APK 77

Query: 274 LFFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYNRFS 333
           LFFIGLSFYFTGDF SAYEEDLQDLVIAAGGTILEKDEFPAPS NDQTAPKVLVVYN   
Sbjct: 78  LFFIGLSFYFTGDFPSAYEEDLQDLVIAAGGTILEKDEFPAPSFNDQTAPKVLVVYN--- 137

Query: 334 WRMQSGGG-----------------EGIAAKVGAQVIGHTWLVESIAA 364
             + S GG                 EGIAAKVGAQVIGHTWLVESIAA
Sbjct: 138 --LDSPGGCKVGEEVLILWQRLNEAEGIAAKVGAQVIGHTWLVESIAA 163

[Close]

BLAST of Cp4.1LG05g01240 vs. TAIR 10
Match: AT1G04020.2 (breast cancer associated RING 1 )

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-23
Identity = 66/166 (39.76%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 215 VKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPKL 274
           +KA +K  +P++EE ++I +D  GC DGPK+ RLR  +N                  PKL
Sbjct: 559 MKASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETN-----------------KPKL 618

Query: 275 FFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILE-KDEFPAPS---CNDQTAPKVLVVYN 334
            F GL FYF GDF   Y+EDLQ+LV  AGGTIL  +DE  A S    NDQ +  + VVYN
Sbjct: 619 -FEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSI-VVYN 678

Query: 335 -------------RFSWRMQSGGGEGIAAKVGAQVIGHTWLVESIA 364
                           W+ ++   E +A++ G++++GHTW++ESIA
Sbjct: 679 IDPPHGCALGEEVTIIWQ-RANDAEALASQTGSRLVGHTWVLESIA 704

[Close]

BLAST of Cp4.1LG05g01240 vs. TAIR 10
Match: AT1G04020.1 (breast cancer associated RING 1 )

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-23
Identity = 66/166 (39.76%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 215 VKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPKL 274
           +KA +K  +P++EE ++I +D  GC DGPK+ RLR  +N                  PKL
Sbjct: 560 MKASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETN-----------------KPKL 619

Query: 275 FFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILE-KDEFPAPS---CNDQTAPKVLVVYN 334
            F GL FYF GDF   Y+EDLQ+LV  AGGTIL  +DE  A S    NDQ +  + VVYN
Sbjct: 620 -FEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSI-VVYN 679

Query: 335 -------------RFSWRMQSGGGEGIAAKVGAQVIGHTWLVESIA 364
                           W+ ++   E +A++ G++++GHTW++ESIA
Sbjct: 680 IDPPHGCALGEEVTIIWQ-RANDAEALASQTGSRLVGHTWVLESIA 705

[Close]

BLAST of Cp4.1LG05g01240 vs. TAIR 10
Match: AT4G21070.1 (breast cancer susceptibility1 )

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-16
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 215 VKACMKERRPLNEEAYKISLDNYGCIDGPKSGRLRVLSNGAVVNCIFCSVLVVVQLAPKL 274
           +KACMK  + ++EE Y+I++D +G  +GP  GR R L                    PKL
Sbjct: 802 IKACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKK-----------------KPKL 861

Query: 275 FFIGLSFYFTGDFLSAYEEDLQDLVIAAGGTILEKDEFPAPSCNDQTAPKVLVVYN---- 334
            F GL FY  GDF  AY+  LQDL++AAGGTIL +     P  +D      +VV++    
Sbjct: 862 -FTGLKFYIMGDFELAYKGYLQDLIVAAGGTILRR----RPVSSDDNEASTIVVFSVEPS 921

Query: 335 -RFSWRMQSGGGEGIAAKVGAQVIGHTWLVESIAAATV 368
            + +   +    E +A    A+    +W+++SIA   +
Sbjct: 922 KKKTLTQRRSDAEALAKSARARAASSSWVLDSIAGCQI 937

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g01240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I443	1.2e-21	39.76	BRCA1-associated RING domain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BARD1 ...	[more]
Q8RXD4	1.7e-15	32.91	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cp4.1LG05g01240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036301.1	1.77e-134	60.67	BRCA1-associated RING domain protein 1, partial [Cucurbita argyrosperma subsp. a...	[more]
KAG6606361.1	7.91e-99	54.30	Rho GDP-dissociation inhibitor 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022996429.1	3.19e-69	51.74	BRCA1-associated RING domain protein 1-like [Cucurbita maxima]	[more]
XP_038887493.1	1.52e-68	31.59	BRCA1-associated RING domain protein 1 isoform X1 [Benincasa hispida]	[more]
XP_022967204.1	1.64e-68	32.24	BRCA1-associated RING domain protein 1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g01240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8P6	1.54e-69	51.74	BRCA1-associated RING domain protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1HW43	7.94e-69	32.24	BRCA1-associated RING domain protein 1 OS=Cucurbita maxima OX=3661 GN=LOC1114668...	[more]
A0A0A0LDW6	9.91e-69	31.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608160 PE=4 SV=1	[more]
A0A6J1HI78	4.20e-68	32.24	BRCA1-associated RING domain protein 1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1ESS5	3.90e-66	72.62	BRCA1-associated RING domain protein 1-like isoform X1 OS=Cucurbita moschata OX=...	[more]

BLAST of Cp4.1LG05g01240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04020.2	8.7e-23	39.76	breast cancer associated RING 1	[more]
AT1G04020.1	8.7e-23	39.76	breast cancer associated RING 1	[more]
AT4G21070.1	1.2e-16	32.91	breast cancer susceptibility1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 272..375 e-value: 1.5E-14 score: 55.8
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 275..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..205
None	No IPR available	PANTHER	PTHR13763:SF9	BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1	coord: 215..366 coord: 39..128
IPR031099	BRCA1-associated	PANTHER	PTHR13763	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	coord: 215..366 coord: 39..128
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 271..362 score: 9.52826

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g01240.1	Cp4.1LG05g01240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0006974	cellular response to DNA damage stimulus
cellular_component	GO:0110165	cellular anatomical entity