Cp4.1LG05g01210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g01210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	Cp4.1LG05: 330230 .. 331818 (+)
RNA-Seq Expression	Cp4.1LG05g01210
Synteny	Cp4.1LG05g01210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAAAAAAAGAGAGGGTACAACAAATTGACTATCAGTTTTCATCTCTTACTCTGCATTTAACCACCAACTCCATTTGTCTTCCACTGCCACCCATCTGTCGCAATGCCCACAATCAACTTTTACGTAGCAACCTTCCAATAAAATCACACCTCTCAACGTCAAATTAATAATAATAATAATAATCTTTTTAGTAAAATAAGTATGAAATGAATAAATATTAATAAATTTTAACAAGTATGAAAGAAAGAGAGAGGAGGGCAAAATTGTCCAGAAAGGAGGAAAAAAAGAAGGGTTGCTGAATGTAACATCTTGTTGTCTCCAAAACTCAACTCACTGTTCTTTCCCTCTCTCTTTGTGTACAGTTTGGATGAGAGGGAATGGAAGAACAATCCCATCAATCACCAAAAAACTTAGTTGTTCTACCTTTTTTAGAAAACCCCAAACAAAACCAATATCCTTTCAACTACACAAATCCAACCAAATCCACAAACAACACACCCTTCTTCACATCTTCTTCCCAATCTCATCAAAAATCCACCTTTTAATTAACCCTCCTCACCTTCTTCCTTGCAATCCCCATATCACTGCCCTATAACAACAACAACAACAACGCCCTCATTTTGTCTCTTCAAAAATCAGCTGCAAGCAACCGTCTTTAACAAACAAAACCAAACAAGAAAAGGAAAGGAAATTAGGATGGACTTCTCCGGGAGTAGCAGCAATAGCAACAACAACAACATCGCCATGAACCACCAGCACTCCGCAACAGCCTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGCCGTGACTGGAAAACTTTCGGTCAATACCTCAACAATCATCGCCCACCGCTCGCCCTCTCACGATGTAGCGGCGCTCATGTCCTCGAATTCCTCAGGTACTAAATTACTTCAAATAAAAAAAATGAACTGAATTGCTTCAAAGTTACAAGCTTTGTGAGTGAGCGCAGGTACCTAGATCAATTTGGAAAGACGAAAGTGCACACACCCATCTGCCCTTTCTACGGCCTTCCGAACCCTCCCGCACCCTGTCCATGCCCTCTTCGGCAGGCGTGGGGGAGCCTCGACGCTTTGGTGGGACGCCTTCGAGCCGCTTTTGAAGAGAATGGAGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAGGCCAGAGGGATCAGCTACGACAAGAAAAGAAAGCGCCCACCATCTCAACACCCCTTGCCTCCTCCTCACACTGCACCTTCATGAGATCAAATCCATATCACAAAAGAACCAAAATTTCCCCAATTGGGTATTGCTCTAAACCTCTTCCAAAATCATGCCTTTTATTTATCTCTCTTTTTTTCCATTGCTAAATCAAATAAGTTGCGGATTTTCACTCTCTCTTCTTCGGCTAGGGTTTGGAAATTTTGAACCNCTTTTTTTTTTTTTTTTTTTTTAATTAAAATTTTCTGAAAAAGTTTGTAAGTCTGTGTAAAGGTGTAGATCTCTGCTTTTGATGCAAATACTAGCAGTGTTACTATTTGTACACTTGT

mRNA sequence

ATGAGAGAAAAAAAGAGAGGGTACAACAAATTGACTATCAGTTTTCATCTCTTACTCTGCATTTAACCACCAACTCCATTTGTCTTCCACTGCCACCCATCTGTCGCAATGCCCACAATCAACTTTTACGTAGCAACCTTCCAATAAAATCACACCTCTCAACGTCAAATTAATAATAATAATAATAATCTTTTTAGTAAAATAAGTATGAAATGAATAAATATTAATAAATTTTAACAAGTATGAAAGAAAGAGAGAGGAGGGCAAAATTGTCCAGAAAGGAGGAAAAAAAGAAGGGTTGCTGAATGTAACATCTTGTTGTCTCCAAAACTCAACTCACTGTTCTTTCCCTCTCTCTTTGTGTACAGTTTGGATGAGAGGGAATGGAAGAACAATCCCATCAATCACCAAAAAACTTAGTTGTTCTACCTTTTTTAGAAAACCCCAAACAAAACCAATATCCTTTCAACTACACAAATCCAACCAAATCCACAAACAACACACCCTTCTTCACATCTTCTTCCCAATCTCATCAAAAATCCACCTTTTAATTAACCCTCCTCACCTTCTTCCTTGCAATCCCCATATCACTGCCCTATAACAACAACAACAACAACGCCCTCATTTTGTCTCTTCAAAAATCAGCTGCAAGCAACCGTCTTTAACAAACAAAACCAAACAAGAAAAGGAAAGGAAATTAGGATGGACTTCTCCGGGAGTAGCAGCAATAGCAACAACAACAACATCGCCATGAACCACCAGCACTCCGCAACAGCCTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGCCGTGACTGGAAAACTTTCGGTCAATACCTCAACAATCATCGCCCACCGCTCGCCCTCTCACGATGTAGCGGCGCTCATGTCCTCGAATTCCTCAGGTACCTAGATCAATTTGGAAAGACGAAAGTGCACACACCCATCTGCCCTTTCTACGGCCTTCCGAACCCTCCCGCACCCTGTCCATGCCCTCTTCGGCAGGCGTGGGGGAGCCTCGACGCTTTGGTGGGACGCCTTCGAGCCGCTTTTGAAGAGAATGGAGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAGGCCAGAGGGATCAGCTACGACAAGAAAAGAAAGCGCCCACCATCTCAACACCCCTTGCCTCCTCCTCACACTGCACCTTCATGAGATCAAATCCATATCACAAAAGAACCAAAATTTCCCCAATTGGGTATTGCTCTAAACCTCTTCCAAAATCATGCCTTTTATTTATCTCTCTTTTTTTCCATTGCTAAATCAAATAAGTTGCGGATTTTCACTCTCTCTTCTTCGGCTAGGGTTTGGAAATTTTGAACCNCTTTTTTTTTTTTTTTTTTTTTAATTAAAATTTTCTGAAAAAGTTTGTAAGTCTGTGTAAAGGTGTAGATCTCTGCTTTTGATGCAAATACTAGCAGTGTTACTATTTGTACACTTGT

Coding sequence (CDS)

ATGGACTTCTCCGGGAGTAGCAGCAATAGCAACAACAACAACATCGCCATGAACCACCAGCACTCCGCAACAGCCTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGCCGTGACTGGAAAACTTTCGGTCAATACCTCAACAATCATCGCCCACCGCTCGCCCTCTCACGATGTAGCGGCGCTCATGTCCTCGAATTCCTCAGGTACCTAGATCAATTTGGAAAGACGAAAGTGCACACACCCATCTGCCCTTTCTACGGCCTTCCGAACCCTCCCGCACCCTGTCCATGCCCTCTTCGGCAGGCGTGGGGGAGCCTCGACGCTTTGGTGGGACGCCTTCGAGCCGCTTTTGAAGAGAATGGAGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAGGCCAGAGGGATCAGCTACGACAAGAAAAGAAAGCGCCCACCATCTCAACACCCCTTGCCTCCTCCTCACACTGCACCTTCATGA

Protein sequence

MDFSGSSSNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS

Homology

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 127/172 (73.84%), Postives = 142/172 (82.56%), Query Frame = 0


Query: 4   SGSSSNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAH 63
           S S + +           S++ S++SSRYENQKRRDW TFGQYL NHRPPL+LSRCSGAH
Sbjct: 27  SSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 86

Query: 64  VLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGG 123
           VLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG
Sbjct: 87  VLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG 146

Query: 124 KPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS 176
           KPE NPFGARAVRLYLREVRD+QSKARG+SY+KK+++     PLP   T+ S
Sbjct: 147 KPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRK----RPLPSSSTSSS 194

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 134/187 (71.66%), Postives = 148/187 (79.14%), Query Frame = 0


Query: 3   FSGSSSNSNNNNIAMNHQHSATASSSS-------------SRYENQKRRDWKTFGQYLNN 62
           F G+++ S+N N+ +    + T +SSS             SRYENQKRRDW TFGQYL N
Sbjct: 7   FMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRN 66

Query: 63  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDA 122
           HRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDA
Sbjct: 67  HRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDA 126

Query: 123 LVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYD-KKRKRPPSQHPLP 176
           L+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISY+ KKRKRPP   PLP
Sbjct: 127 LIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPP--PLP 186

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65
Identity = 121/165 (73.33%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 3   FSGSSSNSNNNNIAMNHQHSATASSSS----SRYENQKRRDWKTFGQYLNNHRPPLALSR 62
           FSG+ S+S+    +        + SSS    SRYE+QKRRDW TFGQYL NHRPPL+LSR
Sbjct: 48  FSGAGSSSSGAGTSAGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSR 107

Query: 63  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 122
           CSGAHVLEFL+Y+DQFGKTKVHTP+CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+
Sbjct: 108 CSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAY 167

Query: 123 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPS 164
           EENGG PE NPFGARAVRLYLREVR+ Q++ARGISY+KK+++ PS
Sbjct: 168 EENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPS 212

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65
Identity = 121/165 (73.33%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 3   FSGSSSNSNNNNIAMNHQHSATASSSS----SRYENQKRRDWKTFGQYLNNHRPPLALSR 62
           FSG+ S+S+    +        + SSS    SRYE+QKRRDW TFGQYL NHRPPL+LSR
Sbjct: 48  FSGAGSSSSGAGTSAGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSR 107

Query: 63  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 122
           CSGAHVLEFL+Y+DQFGKTKVHTP+CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+
Sbjct: 108 CSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAY 167

Query: 123 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPS 164
           EENGG PE NPFGARAVRLYLREVR+ Q++ARGISY+KK+++ PS
Sbjct: 168 EENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPS 212

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.5e-65
Identity = 117/135 (86.67%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 30  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGL 89
           SRYE+QKRRDW TFGQYL NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVH   CPF+G 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 90  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA 149
           P+PPAPCPCPLRQAWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 150 RGISYDKK-RKRPPS 164
           RGI+Y+KK RKRPP+
Sbjct: 141 RGIAYEKKRRKRPPT 155

[Close]

BLAST of Cp4.1LG05g01210 vs. NCBI nr
Match: XP_023532602.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354 bits (909), Expect = 2.69e-123
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MDFSGSSSNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCS 60
           MDFSGSSSNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCS
Sbjct: 1   MDFSGSSSNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCS 60

Query: 61  GAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE 120
           GAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE
Sbjct: 61  GAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE 120

Query: 121 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS 175
           NGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS
Sbjct: 121 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS 175

[Close]

BLAST of Cp4.1LG05g01210 vs. NCBI nr
Match: KAG7036313.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346 bits (888), Expect = 4.76e-120
Identity = 174/178 (97.75%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MDFSGSSSNS---NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFSGSSSNS   NNNN AMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSGSSSNSIIINNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS 175
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS 178

[Close]

BLAST of Cp4.1LG05g01210 vs. NCBI nr
Match: XP_022995850.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 345 bits (884), Expect = 2.16e-119
Identity = 173/181 (95.58%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 1   MDFSGSSSNS------NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPL 60
           MDFSGSSSNS      NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPL
Sbjct: 1   MDFSGSSSNSININNNNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPL 60

Query: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120
           ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL
Sbjct: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120

Query: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAP 175
           RAAFEENGGKPEANPFGARAVRLYLREVRD+QSKARGISYDKKRKRPPSQHPLPPPH AP
Sbjct: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYDKKRKRPPSQHPLPPPHAAP 180

[Close]

BLAST of Cp4.1LG05g01210 vs. NCBI nr
Match: XP_022931179.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata])

HSP 1 Score: 345 bits (884), Expect = 2.23e-119
Identity = 174/182 (95.60%), Postives = 174/182 (95.60%), Query Frame = 0


Query: 1   MDFSGSSSNS-------NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS       NNNN AMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 175
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180

[Close]

BLAST of Cp4.1LG05g01210 vs. NCBI nr
Match: KAG6606371.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345 bits (884), Expect = 2.23e-119
Identity = 174/182 (95.60%), Postives = 174/182 (95.60%), Query Frame = 0


Query: 1   MDFSGSSSNS-------NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS       NNNN AMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 175
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy TrEMBL
Match: A0A6J1K523 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491256 PE=3 SV=1)

HSP 1 Score: 345 bits (884), Expect = 1.04e-119
Identity = 173/181 (95.58%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 1   MDFSGSSSNS------NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPL 60
           MDFSGSSSNS      NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPL
Sbjct: 1   MDFSGSSSNSININNNNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPL 60

Query: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120
           ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL
Sbjct: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120

Query: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAP 175
           RAAFEENGGKPEANPFGARAVRLYLREVRD+QSKARGISYDKKRKRPPSQHPLPPPH AP
Sbjct: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYDKKRKRPPSQHPLPPPHAAP 180

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy TrEMBL
Match: A0A6J1ETL1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437437 PE=3 SV=1)

HSP 1 Score: 345 bits (884), Expect = 1.08e-119
Identity = 174/182 (95.60%), Postives = 174/182 (95.60%), Query Frame = 0


Query: 1   MDFSGSSSNS-------NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS       NNNN AMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 175
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1)

HSP 1 Score: 303 bits (775), Expect = 4.18e-103
Identity = 153/170 (90.00%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MDFSGSSSNS---NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS  SS++   NNNN  +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 167
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 170

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1)

HSP 1 Score: 301 bits (771), Expect = 1.70e-102
Identity = 152/170 (89.41%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MDFSGSSSNS---NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS SSS++   N+NN  +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 167
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPP+Q PL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170

[Close]

BLAST of Cp4.1LG05g01210 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1)

HSP 1 Score: 301 bits (771), Expect = 1.70e-102
Identity = 152/170 (89.41%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MDFSGSSSNS---NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS SSS++   N+NN  +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 167
           FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPP+Q PL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170

[Close]

BLAST of Cp4.1LG05g01210 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-68
Identity = 127/172 (73.84%), Postives = 142/172 (82.56%), Query Frame = 0


Query: 4   SGSSSNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAH 63
           S S + +           S++ S++SSRYENQKRRDW TFGQYL NHRPPL+LSRCSGAH
Sbjct: 27  SSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 86

Query: 64  VLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGG 123
           VLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG
Sbjct: 87  VLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG 146

Query: 124 KPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS 176
           KPE NPFGARAVRLYLREVRD+QSKARG+SY+KK+++     PLP   T+ S
Sbjct: 147 KPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRK----RPLPSSSTSSS 194

[Close]

BLAST of Cp4.1LG05g01210 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-68
Identity = 134/187 (71.66%), Postives = 148/187 (79.14%), Query Frame = 0


Query: 3   FSGSSSNSNNNNIAMNHQHSATASSSS-------------SRYENQKRRDWKTFGQYLNN 62
           F G+++ S+N N+ +    + T +SSS             SRYENQKRRDW TFGQYL N
Sbjct: 7   FMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRN 66

Query: 63  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDA 122
           HRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDA
Sbjct: 67  HRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDA 126

Query: 123 LVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYD-KKRKRPPSQHPLP 176
           L+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISY+ KKRKRPP   PLP
Sbjct: 127 LIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPP--PLP 186

[Close]

BLAST of Cp4.1LG05g01210 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 239.2 bits (609), Expect = 2.5e-63
Identity = 120/180 (66.67%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MDFSGSSSNSNNNNIAMNHQHSATASS--SSSRYENQKRRDWKTFGQYLNNHRPPLALSR 60
           MD    + N+ N N +++ Q  ++ SS  SSSRYENQKRRDW TF QYL NH PPL+L+ 
Sbjct: 1   MDLISQNHNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLAS 60

Query: 61  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 120
           CSGAHVL+FLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+
Sbjct: 61  CSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKR----------PPSQHPLP 169
           EENGG PE +PFG+R+VR++LREVRD Q+K+RG+SY+KKRKR          P SQ PLP
Sbjct: 121 EENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLP 180

[Close]

BLAST of Cp4.1LG05g01210 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-63
Identity = 121/170 (71.18%), Postives = 132/170 (77.65%), Query Frame = 0


Query: 1   MDFSGSSSNSNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCS 60
           MD      N N N+       +     SSSRYENQKRRDW TF QYL NHRPPL+L  CS
Sbjct: 1   MDLISHQPNKNPNS------STQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCS 60

Query: 61  GAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE 120
           GAHVLEFLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EE
Sbjct: 61  GAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPP 171
           NGG PEANPFG+RAVRL+LREVRD Q+KARG+SY+KKRKR   Q P   P
Sbjct: 121 NGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQP 164

[Close]

BLAST of Cp4.1LG05g01210 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.3 bits (578), Expect = 9.9e-60
Identity = 103/138 (74.64%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 27  SSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPF 86
           ++ SRYE+QKRRDW TF QYL NH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH   CP+
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 87  YGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQ 146
           +G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 147 SKARGISYD-KKRKRPPS 164
           +KARGI Y+ KKRKRPP+
Sbjct: 147 AKARGIPYEKKKRKRPPT 164

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g01210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	6.2e-67	73.84	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	6.2e-67	71.66	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	1.2e-65	73.33	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	1.2e-65	73.33	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2YG32	4.5e-65	86.67	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g01210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532602.1	2.69e-123	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG7036313.1	4.76e-120	97.75	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022995850.1	2.16e-119	95.58	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_022931179.1	2.23e-119	95.60	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata]	[more]
KAG6606371.1	2.23e-119	95.60	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Cp4.1LG05g01210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K523	1.04e-119	95.58	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ETL1	1.08e-119	95.60	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L7E1	4.18e-103	90.00	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 S...	[more]
A0A5D3DAV8	1.70e-102	89.41	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BGU6	1.70e-102	89.41	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cp4.1LG05g01210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	4.4e-68	73.84	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.4e-68	71.66	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.5e-63	66.67	Protein of unknown function (DUF640)	[more]
AT5G28490.1	3.3e-63	71.18	Protein of unknown function (DUF640)	[more]
AT1G07090.1	9.9e-60	74.64	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 24..144 e-value: 5.1E-65 score: 217.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 31..158 score: 82.799995
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 8..168
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 8..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g01210.1	Cp4.1LG05g01210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus