Cp4.1LG05g00850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g00850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger HIT domain-containing protein 3
Location	Cp4.1LG05: 515392 .. 518246 (+)
RNA-Seq Expression	Cp4.1LG05g00850
Synteny	Cp4.1LG05g00850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGGGGTACTTCAATTTTGTCAAAACCCTCGTGGGAAGAGGAAGCCGCGCGCCAAACTCGCTTTTGCTTGGGCTGAGAACTTCACATTCTCTCCTTCCGGTGAGGCCTCTACTTTTCTTCTGCTCTTCTTATCGCCGTCTTCGTTAATCCGATTGTATGGTTAAACTTGGTGAATTCGATTCTCTCTTTCTATTTTTCTGCTTTCGGAATCTGTATGTTTGAGTAATTTATATAAATATGTTTTGTTAGTGTGTCTATAATTGTGGAGTGATCAAGTTGAAGTTGAAGTTGAAGTAGCAGCTCTAGCATTGGTTATTCTGGTGAAATCTTAATCCTCCGGACTGAGTTTAAACTTTATTGTTGATGATAGAAGCATCAAGTGTTAATCGCTCTCAGCTTGATAGTTCTACTCGTTTCTGAAAATTTAATTTTAAAATGCGTGTGTGTTTGTATCAACATGTTAATAATGTGGTATCAACAGAAGTAAATTTATCAAAAACATGTTTGAAAGTGGCTCGCCGTGGATATGTGGATATGTATTCTCGAAGTTTTTGTAAGGTTCTAATTTATCCTTTTTTCGTTGCAGCATTTGAGATTTTAAGAAATTGAACATTCTATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATATAAATGCCCCCTATGCCTTGTTCCTTAGTAAGAAAAACAAAAGAATTTCTTTTAGGTCATGTTCGTGTAGTTTTATTGAAAACTCTCTGACCTTCACTCATTTTTGTGGTGGTTTTCTCTGTTTCATTTTGCTTGAAGCTGCTCTCTGGTTTGTTTCAAGAAACACAAAGGTACTGTTCTTTTAGCCTTGGGTTTTCTTGTTCTATTTATGTTCTATATTTCGTAAGCAGTTTAATGTTCAGGTGGTCTACAGTTCAAGAATAACTGTAGTGAAGCCTTTTATTTTGATATAGTATCATGATGTCGCGAAATCTCTAGGCTTTTGGGTTGGTGTGGCTTATGCTCTGTTATGAATTTGAATACACTGCTTAAGTTCAAGGCAGAAATTTTTTCTCATGCTCCCTTTCCTGTATTTTTACCTTTTAACTCGTGGGTTTTGAATTAACCATGAAGGCTACCTACCTAAGATTTAATATTTTACGAGTTACTTTCATAACATAATGTAGTAGGGCATGGACACTTGCAAATATTTAAAAAAAAACTCGAGGGTCTGGTATCTGTCTAGGGTTGAATACTTGCTAGTTACATATTTTCAAGCTGAGGCTCTTGAATCTAATGATCCTAAAAGTAGTTTAGAGTTTTTTCTTTTATGTTTCACTGGCATTCTGTGGTTAGCATTCAATTCTATTGGCATGATAACTAATATCATTTGCAACTTTTGCAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGAGGACCAATCAAGTAAGATGTTCTCATGTTTCGTTTATTCACTTGTGTCGTTTATCTTCTTTAAATGCTGAATGAATGTTCATAGACAGCCAATAATTCCTGATTCTAGGCTTTTGTATGCTGATCAAGTCAATAAACTTTCTTTTCCTCATTCATTCTTCCAGGGTTTTTTATTGCATGCCCTTGTTTTTCTTTCATTTTCCTTATTGAAAGTTTGGTTTCTTTAAAAAAAAAAAGAAAAAAAAGAAAAAAACTTCCACTATTCATACTCACTGATGGTTTTTATTCTTTTTGTATACAGTTGCTCCTAATGGATCACCTGTAGATAGGCCAGTATTTGTTGGAGACCAGAATGAAGTACTAGAAAAGGCGCAGCTAGAGGCTATTGGTACGATTCCTAACTCCTGCTTTTATTACCTCAATTTATTCATGGGATCATTTGGCCGCAAAAAGCACTTGACATGCCTTCCTAATTCCTTACAAGAATGATTAAAAAAAAAAAAACTCACGATGATTATGGTAGACAAAAATCTTCGATTATCAAAGTGAGAAATGTTGGAAGGTTAGATCAAATGAAAANAAAAAAAAAAAAAAAAAAAAAAACTATAATATGATTACCTTCTAAAGACTGGTTGAACTGCTGGAACTTTGGACGGTAAAATATTATTTGAAAAGCGGGTTTAGGTTTATAGTTTGAAAGTGGACAATTTTTATGTCAACCAGAACCTAGTCAGGGAAACTATGTTTATCACATTTTTGTTTATGCGTCAAGAAGAACTTCGTTGCTAGTTGTTAGGACCATTAGTGAACTTACAATCTGCGTTTTCCCCAATTCTTATATTCTCATGCATCTTCCATACAGCTTCTTCCTCAGAAGTACGCAATACTTTGAATGATGAAAAACTCCGTAGCCTCATCTGTGCCATTGATAGCTCACCAGATCCAGAAATTGTGAGTAGTCTGCATCTTCCATTTCATGAGAAATTATACTCTTGAACAACTTTTTGCCCCACTATAGTTAAAAACGTGGGTTTAAGTTGGTTATTGCTCTTATTAGGAGCTTGATAAAGCTATGGAAGATGAAGCATTTCGCATACTAAGCAGCAAGGTACTATTTTCGGTCAAAGTGTTATCAAATATTTATGTTCATCTGTGATTTATGACGCAGTCGTTATGAGCATGTAAGATAAATAGTTTCGTTTGCTTTAAGCATTTACTCTGTTTGTTTGATAGATATCATCGATCATCGGCTCCTAGCCCTGGTGGTCACAGATGGAGGGGAAAAAAGTTGTCCAAGATATATATATATGTATGATCAATGGGACATTTCTGCCTCATTGCCTTAGGTGCTCGGCTCCGAAGATGCTGAAATCAAGGACAAGGATGCAACGGTTAACAGAATGAAGTATGCTGGGATTGACCATCCAAGAGCGTAG

mRNA sequence

CATTGGGGTACTTCAATTTTGTCAAAACCCTCGTGGGAAGAGGAAGCCGCGCGCCAAACTCGCTTTTGCTTGGGCTGAGAACTTCACATTCTCTCCTTCCGCATTTGAGATTTTAAGAAATTGAACATTCTATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATATAAATGCCCCCTATGCCTTGTTCCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGAGGACCAATCAATTGCTCCTAATGGATCACCTGTAGATAGGCCAGTATTTGTTGGAGACCAGAATGAAGTACTAGAAAAGGCGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAGTACGCAATACTTTGAATGATGAAAAACTCCGTAGCCTCATCTGTGCCATTGATAGCTCACCAGATCCAGAAATTGAGCTTGATAAAGCTATGGAAGATGAAGCATTTCGCATACTAAGCAGCAAGGTGCTCGGCTCCGAAGATGCTGAAATCAAGGACAAGGATGCAACGGTTAACAGAATGAAGTATGCTGGGATTGACCATCCAAGAGCGTAG

Coding sequence (CDS)

ATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATATAAATGCCCCCTATGCCTTGTTCCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGAGGACCAATCAATTGCTCCTAATGGATCACCTGTAGATAGGCCAGTATTTGTTGGAGACCAGAATGAAGTACTAGAAAAGGCGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAGTACGCAATACTTTGAATGATGAAAAACTCCGTAGCCTCATCTGTGCCATTGATAGCTCACCAGATCCAGAAATTGAGCTTGATAAAGCTATGGAAGATGAAGCATTTCGCATACTAAGCAGCAAGGTGCTCGGCTCCGAAGATGCTGAAATCAAGGACAAGGATGCAACGGTTAACAGAATGAAGTATGCTGGGATTGACCATCCAAGAGCGTAG

Protein sequence

MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFRILSSKVLGSEDAEIKDKDATVNRMKYAGIDHPRA

Homology

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy Swiss-Prot
Match: Q15649 (Zinc finger HIT domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZNHIT3 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-08
Identity = 41/136 (30.15%), Postives = 67/136 (49.26%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAPNGS--PVDRP- 65
           C +C E P KY+CP C VPYCS+VCF+KHKE   P  +PV  + +S  P  +  PV+   
Sbjct: 11  CVICLEKP-KYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKD 70

Query: 66  --------VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDK 125
                   +   ++ + +    L+ +  S+ +R+ L +  LR L+  +D   D    +  
Sbjct: 71  DDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQGEDKAKLMRA 130

Query: 126 AMEDEAFRILSSKVLG 129
            M++  F   +   LG
Sbjct: 131 YMQEPLFVEFADCCLG 145

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy Swiss-Prot
Match: Q6UIM1 (Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca mulatta OX=9544 GN=ZNHIT3 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 40/136 (29.41%), Postives = 65/136 (47.79%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAP--NGSPVDRP- 65
           C +C E P KY+CP C VPYCS+ CF+KHKE   P  +PV  + +S  P     PV+   
Sbjct: 3   CVICLEKP-KYRCPACRVPYCSVACFRKHKEQCNPEARPVEKKIRSALPTKTXKPVENKD 62

Query: 66  --------VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDK 125
                   +   ++ + +    L+ +  S+ +R+ L +  LR L+  +D   D    +  
Sbjct: 63  DDDSIADFLNSDEEEDRVSLQNLKNLGKSATLRSLLLNPHLRQLMVNLDQGEDKAKLMRA 122

Query: 126 AMEDEAFRILSSKVLG 129
            M++  F   +   LG
Sbjct: 123 YMQEPLFVEFADCCLG 137

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy Swiss-Prot
Match: Q9CQK1 (Zinc finger HIT domain-containing protein 3 OS=Mus musculus OX=10090 GN=Znhit3 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.4e-06
Identity = 40/134 (29.85%), Postives = 64/134 (47.76%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV------PCVK-----PVSAEDQSIAPNG 65
           C VC E P KY+CP C VPYCS+ CF+KHKE       P  K     PV +E+     + 
Sbjct: 11  CVVCLEKP-KYRCPTCRVPYCSVPCFQKHKEQCSSEARPVEKRRAGPPVRSEESK--DDD 70

Query: 66  SPVDRPVFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAM 125
           S V   +   ++ + +    L+ +  S  +R+ L +  LR L+ ++D   +    +   M
Sbjct: 71  SSVADFLNSDEEEDRVSLQNLKNLGESETLRSLLLNPHLRQLMISLDQGDNKAKLMRACM 130

Query: 126 EDEAFRILSSKVLG 129
           ++  F   +   LG
Sbjct: 131 QEPLFVEFADCCLG 141

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy Swiss-Prot
Match: Q2KIH1 (Zinc finger HIT domain-containing protein 3 OS=Bos taurus OX=9913 GN=ZNHIT3 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.0e-06
Identity = 23/37 (62.16%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 2  GPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVP 39
          G   C VC E P KY+CP C VPYCSL CF+KHK  P
Sbjct: 7  GTAVCVVCLEKP-KYRCPACRVPYCSLPCFRKHKAPP 42

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy Swiss-Prot
Match: Q6UIM2 (Zinc finger HIT domain-containing protein 3 (Fragment) OS=Pan troglodytes OX=9598 GN=ZNHIT3 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-06
Identity = 36/127 (28.35%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 15  KYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAPNGS--PVDRP---------V 74
           KY+CP C VPYCS+ CF+KHKE   P  +PV  + +S  P  +  PV+           +
Sbjct: 5   KYRCPACRVPYCSVACFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKDDDDSIADFL 64

Query: 75  FVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFRI 129
              ++ + +    L+ +  S+ +R+ L +  LR L+  +D   D    +   M++  F  
Sbjct: 65  NSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQGEDKAKLMRAYMQEPLFVE 124

[Close]

BLAST of Cp4.1LG05g00850 vs. NCBI nr
Match: XP_023533050.1 (zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo] >XP_023533051.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo] >XP_023533053.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (646), Expect = 3.32e-84
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR
Sbjct: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120

Query: 121 ILSSKV 126
           ILSSK+
Sbjct: 121 ILSSKI 126

[Close]

BLAST of Cp4.1LG05g00850 vs. NCBI nr
Match: XP_022931150.1 (zinc finger HIT domain-containing protein 3 [Cucurbita moschata] >XP_022931151.1 zinc finger HIT domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 251 bits (641), Expect = 1.92e-83
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           VFVGDQNEVLEKAQLEAIASSSE+RNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR
Sbjct: 61  VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120

Query: 121 ILSSKV 126
           ILS K+
Sbjct: 121 ILSGKI 126

[Close]

BLAST of Cp4.1LG05g00850 vs. NCBI nr
Match: KAG7036274.1 (Zinc finger HIT domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251 bits (641), Expect = 1.92e-83
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           VFVGDQNEVLEKAQLEAIASSSE+RNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR
Sbjct: 61  VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120

Query: 121 ILSSKV 126
           ILS K+
Sbjct: 121 ILSGKI 126

[Close]

BLAST of Cp4.1LG05g00850 vs. NCBI nr
Match: XP_022995777.1 (zinc finger HIT domain-containing protein 3 [Cucurbita maxima] >XP_022995779.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima])

HSP 1 Score: 251 bits (641), Expect = 1.92e-83
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           VFVGDQNEVLEK QLEAIASSSE+RNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR
Sbjct: 61  VFVGDQNEVLEKTQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120

Query: 121 ILSSKV 126
           ILSSK+
Sbjct: 121 ILSSKI 126

[Close]

BLAST of Cp4.1LG05g00850 vs. NCBI nr
Match: KAG6606334.1 (Zinc finger HIT domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239 bits (610), Expect = 8.94e-79
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           VFVGDQNEVLEKAQLEAI    E+RNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR
Sbjct: 61  VFVGDQNEVLEKAQLEAI----EIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120

Query: 121 ILSSKV 126
           ILS K+
Sbjct: 121 ILSGKI 122

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy TrEMBL
Match: A0A6J1JZX2 (zinc finger HIT domain-containing protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111491210 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 9.30e-84
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           VFVGDQNEVLEK QLEAIASSSE+RNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR
Sbjct: 61  VFVGDQNEVLEKTQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120

Query: 121 ILSSKV 126
           ILSSK+
Sbjct: 121 ILSSKI 126

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy TrEMBL
Match: A0A6J1ESW0 (zinc finger HIT domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437419 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 9.30e-84
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           VFVGDQNEVLEKAQLEAIASSSE+RNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR
Sbjct: 61  VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120

Query: 121 ILSSKV 126
           ILS K+
Sbjct: 121 ILSGKI 126

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy TrEMBL
Match: A0A6J1DXU2 (zinc finger HIT domain-containing protein 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024491 PE=4 SV=1)

HSP 1 Score: 221 bits (562), Expect = 1.02e-71
Identity = 108/126 (85.71%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRP 60
           MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP
Sbjct: 1   MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRP 60

Query: 61  VFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFR 120
           + V DQ+EVLEK+QLEAIASSSE+RNTLNDE L+ LICAI SSPDPE ELD+AMEDEAFR
Sbjct: 61  ICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFR 120

Query: 121 ILSSKV 126
           I SSK+
Sbjct: 121 IFSSKI 126

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy TrEMBL
Match: A0A1S3CM88 (zinc finger HIT domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502587 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 4.79e-68
Identity = 106/127 (83.46%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDR 60
           M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS EDQS APNGS VDR
Sbjct: 1   MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDR 60

Query: 61  PVFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAF 120
           P+ VGDQNEVLEK+QLEAIASSSE+ N LNDEKLR  I AIDSS DPE ELDKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAF 120

Query: 121 RILSSKV 126
           RI SSK+
Sbjct: 121 RIFSSKI 127

[Close]

BLAST of Cp4.1LG05g00850 vs. ExPASy TrEMBL
Match: A0A0A0KDK5 (HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G403610 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 2.64e-65
Identity = 102/127 (80.31%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDR 60
           M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS A NG+ VDR
Sbjct: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60

Query: 61  PVFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAF 120
           P+ VGDQNEVLEK+QLEAIASSSE+ N LNDEKL+  I AIDSSPDPE E+DKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120

Query: 121 RILSSKV 126
           RI SSK+
Sbjct: 121 RIFSSKI 127

[Close]

BLAST of Cp4.1LG05g00850 vs. TAIR 10
Match: AT4G28820.2 (HIT-type Zinc finger family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 69/156 (44.23%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVK---PVSAEDQSIAP---------- 65
           C++C +  SKYKCP CLVPYCSL CFK HKE PC K   P S E++  +P          
Sbjct: 9   CEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCAKPSDPSSTEEKPASPAKEVPVKRPE 68

Query: 66  -------------------NGSPVDRPVFVGDQNEVLEKAQLEAIASSSEVRNTLNDEKL 125
                                 PV RP+ V ++  +LEK Q EAIASSSE+R  L DE L
Sbjct: 69  EANDVVEKTQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEIREALKDEPL 128

Query: 126 RSLICAIDSSPDPEIELDKAMEDEAFRILSSKVLGS 130
           + LI +IDSS +P  ELD+AM  EAFR  + K+L +
Sbjct: 129 QKLIYSIDSSSNPLQELDEAMGIEAFREFTDKILSN 164

[Close]

BLAST of Cp4.1LG05g00850 vs. TAIR 10
Match: AT4G28820.1 (HIT-type Zinc finger family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-27
Identity = 68/157 (43.31%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 6   CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGS---------- 65
           C++C +  SKYKCP CLVPYCSL CFK HKE PC KP         P  S          
Sbjct: 9   CEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCAKPSDPSSTEEKPAASPAKEVPVKRP 68

Query: 66  -----------------------PVDRPVFVGDQNEVLEKAQLEAIASSSEVRNTLNDEK 125
                                  PV RP+ V ++  +LEK Q EAIASSSE+R  L DE 
Sbjct: 69  EEANDVVEKTQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEIREALKDEP 128

Query: 126 LRSLICAIDSSPDPEIELDKAMEDEAFRILSSKVLGS 130
           L+ LI +IDSS +P  ELD+AM  EAFR  + K+L +
Sbjct: 129 LQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKILSN 165

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g00850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15649	5.8e-08	30.15	Zinc finger HIT domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZNHIT3 PE...	[more]
Q6UIM1	1.7e-07	29.41	Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca mulatta OX=9544...	[more]
Q9CQK1	5.4e-06	29.85	Zinc finger HIT domain-containing protein 3 OS=Mus musculus OX=10090 GN=Znhit3 P...	[more]
Q2KIH1	7.0e-06	62.16	Zinc finger HIT domain-containing protein 3 OS=Bos taurus OX=9913 GN=ZNHIT3 PE=2...	[more]
Q6UIM2	9.2e-06	28.35	Zinc finger HIT domain-containing protein 3 (Fragment) OS=Pan troglodytes OX=959...	[more]

BLAST of Cp4.1LG05g00850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533050.1	3.32e-84	99.21	zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_022931150.1	1.92e-83	97.62	zinc finger HIT domain-containing protein 3 [Cucurbita moschata] >XP_022931151.1...	[more]
KAG7036274.1	1.92e-83	97.62	Zinc finger HIT domain-containing protein 3 [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022995777.1	1.92e-83	97.62	zinc finger HIT domain-containing protein 3 [Cucurbita maxima] >XP_022995779.1 z...	[more]
KAG6606334.1	8.94e-79	94.44	Zinc finger HIT domain-containing protein 3, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Cp4.1LG05g00850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZX2	9.30e-84	97.62	zinc finger HIT domain-containing protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1ESW0	9.30e-84	97.62	zinc finger HIT domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1DXU2	1.02e-71	85.71	zinc finger HIT domain-containing protein 3 isoform X1 OS=Momordica charantia OX...	[more]
A0A1S3CM88	4.79e-68	83.46	zinc finger HIT domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0KDK5	2.64e-65	80.31	HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G403610 PE...	[more]

BLAST of Cp4.1LG05g00850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28820.2	1.1e-27	44.23	HIT-type Zinc finger family protein	[more]
AT4G28820.1	1.5e-27	43.31	HIT-type Zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007529	Zinc finger, HIT-type	PFAM	PF04438	zf-HIT	coord: 5..32 e-value: 5.5E-10 score: 38.9
IPR007529	Zinc finger, HIT-type	PROSITE	PS51083	ZF_HIT	coord: 6..39 score: 11.105587
None	No IPR available	GENE3D	3.30.60.190		coord: 2..48 e-value: 8.1E-13 score: 49.9
None	No IPR available	PANTHER	PTHR13483	UNCHARACTERIZED	coord: 5..127
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 4..37
IPR040197	Zinc finger HIT domain-containing protein 3	PANTHER	PTHR13483:SF11	ZINC FINGER HIT DOMAIN-CONTAINING PROTEIN 3	coord: 5..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g00850.1	Cp4.1LG05g00850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000492	box C/D snoRNP assembly
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0048254	snoRNA localization
cellular_component	GO:0005634	nucleus
cellular_component	GO:0070761	pre-snoRNP complex
molecular_function	GO:0046872	metal ion binding