Cp4.1LG05g00210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g00210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Lysine-specific demethylase JMJ706-like protein
Location	Cp4.1LG05: 866596 .. 869894 (-)
RNA-Seq Expression	Cp4.1LG05g00210
Synteny	Cp4.1LG05g00210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCAAATATCATGTACAAAATCAAAACTGAAATTTAGTCCTTAGCTAGTTGTACAGCCACATTTGCTATTTCATCCTGATTATAGTGTTGACGGGTGGAAGGACGAATCTACATGACCAGAGAGTCTAAAAATAGCATAGAGTTTCTTTAACGAAAAAGGATTCAGCGAACGAAATCCGAAGCTGTTGCTGGGACAGTTACCGTAACAAATATGTTGATCAGAAGTGACGGAGATGCTTTAAGAGCTTCGATATCTCGTGGCAAGAAATTTCACGACGATATGGATTCATTTTCCTGGTCAAATGGTCCTTCTAATAGGAATAAAGACTTTTCAAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGATTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGAAGCCTCCAGATATGGTCAGGTACCCTATTTTTTTCGATGCAAATCATAATTCCATGCCATATCTTAATTTTTTATGGATCTGAGAGCTTTAAATGATAATATTTTAGTTAGGCATTGCAATCCAGATATGGTCAGACACCCTATTTTTTCTATTCAAATCGTAATTCCAAGCCATATCTTAATTTTTTATGGATGTGAGAGCTTTAAATAACAATGAATGCTAGCTAGGCTTGAAATTTGGGATGTGAGAGCTTCAAAACATCAAGTTGTGTTCACTCGCATACTGCTTTGAAATTTGGGATATGCGGTACTAGTGGTGGAATAGAATTTGGTTTTGGTTATTTTGTGATGTTTAAAAACATTACCTATTATTCATATTCGTTCCCATTATTATTATTTTTGTTTAAACAAACGCTTCTCTATGAAGATTACGGACTTCGCTGAAAATTTTGAAGTCAAGACTGATCACTTTAAATGTTTGAATATGTAATTATCGTTTTCAATTCCTCAATACGTTTGATCACTGCCTTCTCATTATCACTTGGCTTGGTTTGTCAGTGATCGTTCTATGTATTTTGTTATATTGCTATTACACAGCACAAATTTCCACACTTGGCCAGTGTGTATAAACGTAATGTATCATATGCCCGTATTAAATTTTATTGATTTCGTTAATGCATAATAGAGATGGCCATTTGCATTGTTAAATAAACATTGTGAATTAATTGTTGATAGCTGTGAGCCTGTGACTACTTGTGATTGTGTGGGATGAGTCACTTTGTTTTTAGTTTTCTTTCTTGGTTGAGTTATAGACTTGGCTTTCTTTTGTAGGGATTTTCTCTTAGCTCTTCTATCTCTTCTGTAAGTTTTCGAAGACTTTCATCATTCCCGCTGAAATATTTTCATGACTTTTATACTTCCACAGACCTTTTCCCTTATTCACATAATCAAGGCTTCGCCCGTTTTTAATCATTTAATGGATTTGTTCGGTACAGAGGCGTTCCAACCATTTTAGTGCTCCCATTTTTAAAAACATTTAGTCTGAACATTATCAAAATGTGTCCTTAAATTATCGTTAGCAATTCTGGATAAGCTAAGCTTCATACAGGTTGAACTAATGAGACATGATACTCCGAAAGTTGCAATGCTTTAGTTTCTTACATGACTTCGGTTGGATCCTTCAGGGAATTACTGTGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGGTACGTTACCAAAATAGTCAAGATTTTCAGTAATCGGTACTACCCCTGGGATGATTAATTATTTTCATTGTTTCTTTATGGTTCCTTTGTGGAGCATCAAAAACTTGGTATTGTATTCCAGATGATGCGGCTTTGAGATTGGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGAGGATATTCTGTCAGCAAATGGTGAGTATGGAGCTTTTGATGTTCTTTCGGGAAAAACGGCACTGTTTCCTCCAAATATTCTGCTGAAGAGTATACCATGCTGGCTTTAGTCATGGTGAGACATTCTAATCATTATCCTGTATTTTTTTCTTGCACCTTATCCAATTATCGACATTTTTTCTTAGTTTGTAATGGGCAGTCTTTTCTTTTTCCTCTTCAAATCTATAGGCTTCAATTGTGGTGAAGCTGTGAACTTCGCCATTAGCTATTGGTTTCCTTTGGGTACTCTGGCTAGCCAGTGCATGCCCTTCTTAATTGAGTTCCTCTACTCACTCGCGAAGAACTTTTGTGTAATGAAGCAATGCTTCTACACACAAATTTAGAACTTGAAGATTCAGTTCATTCATTCGTGGATCAGTCTATCACCATTCCCTCAAGCTATCTCTTATGAGTCCGATTCGCTTCCACAATTGTGCTCGGTAGTTACTCATGAAATCCAGGGTTTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTGTGGACATCATGTGTGCCTTTGCCATGGTATACTTCCTCGTTTTCTGCTTGAGAAATATGTTTGACATCCTATCAAAAAATGAATAAAATAAATTGAAATGTTACACATGTTTGACATTTTGTTTAAAAATGATCGACCTCATTTATTTTTTCTTCTGAATGATGTATGTTTATATTGGGTCGTTGACTCTTTTGGCGTACAGAACTGACAGAATAGATTAACAAGACAAAGTGTTTGCTCCAAAGAGTCTTTTTGATAGGATTTCTTTTTAACGTATCACTTCGAAACTTTCATGTCTATCTATTAATTATCATCTTGAGGCTGTTGACTACAGCCTGCAATGAAGTATATATATATATATATATATATATATATAGGCAGGATTTTGACGAGTGGTGTCGCTGAAATATGTAGAACTGAAATGTCTGAGACTTCACGACGTCCAAAGCCAAACATTGTAAGATTTTGCTGTTTTCTTGAGATCTGGTTTTCGTTTCGTTTACAAAATTATTGAGATTTCTTCAGAAAAGAAAAAAAAAAAAAAGGATTGGAGGAAGGCCCACATTTTGATTTAACTGAAGTCTCATCTGTTGCTTCCTTCCAAGCAGATACAGAAGCATGCTTATAATGAATTTGGAAATCATAAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAGGACGCAGAGATTTTAAGGGTTAAGCGTCAATCGTTGAGGATGAAAAGAA

mRNA sequence

AGTTCAAATATCATGTACAAAATCAAAACTGAAATTTAGTCCTTAGCTAGTTGTACAGCCACATTTGCTATTTCATCCTGATTATAGTGTTGACGGGTGGAAGGACGAATCTACATGACCAGAGAGTCTAAAAATAGCATAGAGTTTCTTTAACGAAAAAGGATTCAGCGAACGAAATCCGAAGCTGTTGCTGGGACAGTTACCGTAACAAATATGTTGATCAGAAGTGACGGAGATGCTTTAAGAGCTTCGATATCTCGTGGCAAGAAATTTCACGACGATATGGATTCATTTTCCTGGTCAAATGGTCCTTCTAATAGGAATAAAGACTTTTCAAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGATTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGAAGCCTCCAGATATGGTCAGGGAATTACTGTGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGATGATGCGGCTTTGAGATTGGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGAGGATATTCTGTCAGCAAATGGGTTTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTGTGGACATCATGTGTGCCTTTGCCATGATACAGAAGCATGCTTATAATGAATTTGGAAATCATAAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAGGACGCAGAGATTTTAAGGGTTAAGCGTCAATCGTTGAGGATGAAAAGAA

Coding sequence (CDS)

ATGTTGATCAGAAGTGACGGAGATGCTTTAAGAGCTTCGATATCTCGTGGCAAGAAATTTCACGACGATATGGATTCATTTTCCTGGTCAAATGGTCCTTCTAATAGGAATAAAGACTTTTCAAAGAGAAAAATTGATAAGTTTCACTGCAGTGATCTAGAATGGATTGATGAGATTCCAGAATGTCCCGTGTATCATCCCTCAGAAGGGGAATTTGAGGATCCTCTGGTTTATTTGCAGAAGATTGCTCCGGAAGCCTCCAGATATGGTCAGGGAATTACTGTGCCAATGCTATATATTGGAATGCTGTTTAGTATATTTGCCTGGCGCATGTGGAGGATGGTTTCCTGTATAGATGATGCGGCTTTGAGATTGGAGAACGTTGTCAAAGAAAATGTGTACAGAGAGAGGATATTCTGTCAGCAAATGGGTTTGAACGGGGATTTCTCCAAGGTCCCATGGCACTATCCTCTGCAGTGTATGCATATGTCTGTTGCAGCTGTTGTGGACATCATGTGTGCCTTTGCCATGATACAGAAGCATGCTTATAATGAATTTGGAAATCATAAAACCCCCAGTGTTTCTCAAGTGTCGTGTTATACATGCGAGCCTTTTCCTTCCCTTCAACCAGGGGAGAACTGTTCAAGATCAGCTATTCGACCTCCTGGGGACCATAATGATGATGATTAG

Protein sequence

MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIPECPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVPMLYIGMLFSIFAWRMWRMVSCIDDAALRLENVVKENVYRERIFCQQMGLNGDFSKVPWHYPLQCMHMSVAAVVDIMCAFAMIQKHAYNEFGNHKTPSVSQVSCYTCEPFPSLQPGENCSRSAIRPPGDHNDDD

Homology

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy Swiss-Prot
Match: Q336N8 (Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica OX=39947 GN=JMJ706 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-17
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 4   RSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKD-FSKRKIDKFHCSDLEWIDEIPEC 63
           RS GDALR   + G + H +  +   S   + +NKD F+KR++DKF  S LEWID+I EC
Sbjct: 46  RSGGDALRTPANCGVRLHANNGTALPSR--TTQNKDPFAKRRVDKFDMSSLEWIDKIEEC 105

Query: 64  PVYHPSEGEFEDPLVYLQKIAPEASRYG 91
           PVY+P++ EFEDP+ Y+QKIAP AS+YG
Sbjct: 106 PVYYPTKEEFEDPIGYIQKIAPVASKYG 131

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy Swiss-Prot
Match: Q9VMJ7 (Lysine-specific demethylase lid OS=Drosophila melanogaster OX=7227 GN=lid PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.4e-04
Identity = 28/95 (29.47%), Postives = 45/95 (47.37%), Query Frame = 0


Query: 12  ASISRGKKFHDDMDSFSWSNGPSNRNKD----------FSKRKIDKFHCSDLEWIDEIPE 71
           +S+S  KK+H+     + +  P+   K           F + K ++FH       D  PE
Sbjct: 107 SSVSASKKYHNSCPHPTPTPAPTGHKKSVHTQPHSSNKFDQGKNEEFH------FDTPPE 166

Query: 72  CPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVP 97
           CPV+ P+  EF++PL Y+ KI   A + G    +P
Sbjct: 167 CPVFRPTTEEFKNPLAYISKIRSIAEKCGIAKILP 195

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy Swiss-Prot
Match: C0SUT9 (Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana OX=3702 GN=JMJ16 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 5.7e-04
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 58  EIPECPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVP 97
           ++ + PV++PSE EFED L Y+ KI PEA +YG    VP
Sbjct: 142 DLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYGICRIVP 180

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy Swiss-Prot
Match: Q9STM3 (Lysine-specific demethylase REF6 OS=Arabidopsis thaliana OX=3702 GN=REF6 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.5e-04
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 0


Query: 55 WIDEIPECPVYHPSEGEFEDPLVYLQKIAPEASRYG 91
          W+  +P  P + P+  EF+DP+ Y+ KI  EASRYG
Sbjct: 13 WLKSLPVAPEFRPTLAEFQDPIAYILKIEEEASRYG 48

[Close]

BLAST of Cp4.1LG05g00210 vs. NCBI nr
Match: KAG7036210.1 (Lysine-specific demethylase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380 bits (977), Expect = 2.17e-131
Identity = 193/264 (73.11%), Postives = 196/264 (74.24%), Query Frame = 0


Query: 24  MDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIPECPVYHPSEGEFEDPLVYLQKIA 83
           MDSFSW NGPS RNKDFSKRKIDKFHCSDLEW DEIPECPVYHPSEGEFEDPLVYLQKIA
Sbjct: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60

Query: 84  PEASRYGQ---------------GITVPMLYIGMLFSIFAWRMWRMVSCIDDAALRLENV 143
           P ASRYGQ               GIT PMLYIGMLFSIFAWRMWRMVSCIDDAALR ENV
Sbjct: 61  PGASRYGQLQCFSFLHDLGWILQGITEPMLYIGMLFSIFAWRMWRMVSCIDDAALRFENV 120

Query: 144 VKENVYRERI-------------------------------------------FCQQMGL 203
           VKENVYRE I                                           FC   G+
Sbjct: 121 VKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIEFLYSLAKNFC---GV 180

Query: 204 NGDFSKVPWHYPLQCMHMSVAAVVDIMCAFAMIQKHAYNEFGNHKTPSVSQVSCYTCEPF 229
           NGDFSKVPWHYPLQCMHMSVAAV+DIMCAFAMIQKHAYNEFGNH+TPSVSQVSCYTCEPF
Sbjct: 181 NGDFSKVPWHYPLQCMHMSVAAVMDIMCAFAMIQKHAYNEFGNHETPSVSQVSCYTCEPF 240

[Close]

BLAST of Cp4.1LG05g00210 vs. NCBI nr
Match: KAG6606271.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348 bits (894), Expect = 4.14e-118
Identity = 189/304 (62.17%), Postives = 193/304 (63.49%), Query Frame = 0


Query: 24  MDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIPECPVYHPSEGEFEDPLVYLQKIA 83
           MDSFSW NGPS RNKDFSKRKIDKFHCSDLEW DEIPECPVYHPSEGEFEDPLVYLQKIA
Sbjct: 1   MDSFSWPNGPSYRNKDFSKRKIDKFHCSDLEWTDEIPECPVYHPSEGEFEDPLVYLQKIA 60

Query: 84  PEASRYGQ---------------------GITVPMLYIGMLFSIFAWRMWRMVSCIDDAA 143
           P ASRYGQ                     GIT PMLYIGMLFSIFAWRMWRMVSCIDDAA
Sbjct: 61  PGASRYGQTFSLIHIIKVSPVVNHLMDLLGITEPMLYIGMLFSIFAWRMWRMVSCIDDAA 120

Query: 144 LRLENVVKENVYRERIF------CQQ---------------------------------- 203
           LR ENVVKENVYRE I       C +                                  
Sbjct: 121 LRFENVVKENVYREDILSANGFNCGEAVNFAISYWFPLGTLASQCMPFLIDLSPFPQAIS 180

Query: 204 -----------------MGLNGDFSKVPWHYPLQCMHMSVAAVVDIM---------CAFA 229
                             G+NGDFSKVPWHYPLQCMHMSVAAV+DIM         C   
Sbjct: 181 YESDSLPQLCSVVTHEIQGVNGDFSKVPWHYPLQCMHMSVAAVMDIMILTSGAAEICRTE 240

[Close]

BLAST of Cp4.1LG05g00210 vs. NCBI nr
Match: XP_038888625.1 (lysine-specific demethylase JMJ706-like isoform X4 [Benincasa hispida])

HSP 1 Score: 165 bits (418), Expect = 2.62e-43
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1   MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
           ML RS GDALRAS+S G KFHDD+DSFSWSNGPSN N DFSKR++DKFHCSDLEWI++IP
Sbjct: 36  MLTRSGGDALRASVSYGMKFHDDVDSFSWSNGPSNGNNDFSKREVDKFHCSDLEWINKIP 95

Query: 61  ECPVYHPSEGEFEDPLVYLQKIAPEASRYG 90
           ECPVYHPS+ EFEDPLVYLQK+APEASRYG
Sbjct: 96  ECPVYHPSKEEFEDPLVYLQKLAPEASRYG 125

[Close]

BLAST of Cp4.1LG05g00210 vs. NCBI nr
Match: XP_038888620.1 (lysine-specific demethylase JMJ706-like isoform X1 [Benincasa hispida] >XP_038888621.1 lysine-specific demethylase JMJ706-like isoform X1 [Benincasa hispida] >XP_038888622.1 lysine-specific demethylase JMJ706-like isoform X1 [Benincasa hispida])

HSP 1 Score: 165 bits (418), Expect = 5.95e-43
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1   MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
           ML RS GDALRAS+S G KFHDD+DSFSWSNGPSN N DFSKR++DKFHCSDLEWI++IP
Sbjct: 36  MLTRSGGDALRASVSYGMKFHDDVDSFSWSNGPSNGNNDFSKREVDKFHCSDLEWINKIP 95

Query: 61  ECPVYHPSEGEFEDPLVYLQKIAPEASRYG 90
           ECPVYHPS+ EFEDPLVYLQK+APEASRYG
Sbjct: 96  ECPVYHPSKEEFEDPLVYLQKLAPEASRYG 125

[Close]

BLAST of Cp4.1LG05g00210 vs. NCBI nr
Match: TYK31187.1 (lysine-specific demethylase JMJ706-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 7.28e-41
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
          ML RS GDALRAS+SRG KFHDD DSF+ SNGPSN N DFSK ++ KFHCSDLEWI++IP
Sbjct: 1  MLTRSGGDALRASVSRGMKFHDDEDSFARSNGPSNGNNDFSKGEVVKFHCSDLEWINKIP 60

Query: 61 ECPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVPM 97
          ECPVYHPS+ EFEDPLVYLQ IAPEASRYG+    P+
Sbjct: 61 ECPVYHPSKEEFEDPLVYLQNIAPEASRYGKSRVQPL 97

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy TrEMBL
Match: A0A5D3E513 (Lysine-specific demethylase JMJ706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004710 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 3.53e-41
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
          ML RS GDALRAS+SRG KFHDD DSF+ SNGPSN N DFSK ++ KFHCSDLEWI++IP
Sbjct: 1  MLTRSGGDALRASVSRGMKFHDDEDSFARSNGPSNGNNDFSKGEVVKFHCSDLEWINKIP 60

Query: 61 ECPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVPM 97
          ECPVYHPS+ EFEDPLVYLQ IAPEASRYG+    P+
Sbjct: 61 ECPVYHPSKEEFEDPLVYLQNIAPEASRYGKSRVQPL 97

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy TrEMBL
Match: A0A0A0LHZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901020 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 5.90e-40
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1   MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
           ML RS GDALRAS+SRG KFHDD+DSFS SNGPSN N DFSK ++DKFHCSDLEWI++IP
Sbjct: 11  MLARSGGDALRASVSRGMKFHDDVDSFSRSNGPSNGNNDFSKGEVDKFHCSDLEWINKIP 70

Query: 61  ECPVYHPSEGEFEDPLVYLQKIAPEASRYG 90
           ECPVY PS+ EFEDPLVYLQ IAPEASRYG
Sbjct: 71  ECPVYQPSKEEFEDPLVYLQNIAPEASRYG 100

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy TrEMBL
Match: A0A5A7T8M7 (Lysine-specific demethylase JMJ706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G00840 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 6.10e-39
Identity = 72/90 (80.00%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
          ML RS GDALRAS+SRG KFHDD DSF+ SNGPSN N DFSK ++ KFHCSDLEWI++IP
Sbjct: 1  MLTRSGGDALRASVSRGMKFHDDEDSFARSNGPSNGNNDFSKGEVVKFHCSDLEWINKIP 60

Query: 61 ECPVYHPSEGEFEDPLVYLQKIAPEASRYG 90
          ECPVYHPS+ EFEDPLVYLQ IAPEASRYG
Sbjct: 61 ECPVYHPSKEEFEDPLVYLQNIAPEASRYG 90

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy TrEMBL
Match: A0A1S4E5H7 (LOW QUALITY PROTEIN: lysine-specific demethylase JMJ706-like OS=Cucumis melo OX=3656 GN=LOC103503570 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 6.18e-39
Identity = 72/90 (80.00%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1   MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
           ML RS GDALRAS+SRG KFHDD DSF+ SNGPSN N DFSK ++ KFHCSDLEWI++IP
Sbjct: 11  MLTRSGGDALRASVSRGMKFHDDEDSFARSNGPSNGNNDFSKGEVVKFHCSDLEWINKIP 70

Query: 61  ECPVYHPSEGEFEDPLVYLQKIAPEASRYG 90
           ECPVYHPS+ EFEDPLVYLQ IAPEASRYG
Sbjct: 71  ECPVYHPSKEEFEDPLVYLQNIAPEASRYG 100

[Close]

BLAST of Cp4.1LG05g00210 vs. ExPASy TrEMBL
Match: A0A6J1DYM9 (lysine-specific demethylase JMJ706-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025441 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 6.35e-38
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1   MLIRSDGDALRASISRGKKFHDDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEIP 60
           ML RS GD LRA +S G +FHDD+DSFSWSNGP++ N DFSKRK+D+F CSDLEWI +I 
Sbjct: 11  MLTRSGGDTLRAPLSCGMRFHDDLDSFSWSNGPASGNNDFSKRKVDRFGCSDLEWIHKIS 70

Query: 61  ECPVYHPSEGEFEDPLVYLQKIAPEASRYG 90
           ECPVYHPS  EFEDPLVYLQKIAPEASRYG
Sbjct: 71  ECPVYHPSREEFEDPLVYLQKIAPEASRYG 100

[Close]

BLAST of Cp4.1LG05g00210 vs. TAIR 10
Match: AT5G46910.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-16
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 2   LIRSDGDALR-ASISRGKKFH-DDMDSFSWSNGPSNRNKDFSKRKIDKFHCSDLEWIDEI 61
           + RS GDALR  S S G +      D+ S  +G S       K K++K    DL+W + +
Sbjct: 41  MARSGGDALRPTSASCGMRLRVTSSDTVSKVHGASTVRGGLMKEKVEKLETDDLKWTERL 100

Query: 62  PECPVYHPSEGEFEDPLVYLQKIAPEASRYG 91
           PECPVY P++ EFEDPL YLQKI PEAS+YG
Sbjct: 101 PECPVYRPTKEEFEDPLTYLQKIFPEASKYG 131

HSP 2 Score: 42.4 bits (98), Expect = 5.9e-04
Identity = 26/63 (41.27%), Postives = 31/63 (49.21%), Query Frame = 0


Query: 92  GITVPMLYIGMLFSIFAWRM----------------WRMVSCIDDAALRLENVVKENVYR 139
           G+T PMLYIGMLFS+FAW +                         AAL+ E VVKE VY 
Sbjct: 275 GVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGSAALKFEKVVKECVYN 334

[Close]

BLAST of Cp4.1LG05g00210 vs. TAIR 10
Match: AT1G08620.1 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-05
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 58  EIPECPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVP 97
           ++ + PV++PSE EFED L Y+ KI PEA +YG    VP
Sbjct: 142 DLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYGICRIVP 180

[Close]

BLAST of Cp4.1LG05g00210 vs. TAIR 10
Match: AT1G08620.2 (Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-05
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 58  EIPECPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVP 97
           ++ + PV++PSE EFED L Y+ KI PEA +YG    VP
Sbjct: 142 DLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYGICRIVP 180

[Close]

BLAST of Cp4.1LG05g00210 vs. TAIR 10
Match: AT3G48430.1 (relative of early flowering 6 )

HSP 1 Score: 45.8 bits (107), Expect = 5.3e-05
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 0


Query: 55 WIDEIPECPVYHPSEGEFEDPLVYLQKIAPEASRYG 91
          W+  +P  P + P+  EF+DP+ Y+ KI  EASRYG
Sbjct: 13 WLKSLPVAPEFRPTLAEFQDPIAYILKIEEEASRYG 48

[Close]

BLAST of Cp4.1LG05g00210 vs. TAIR 10
Match: AT5G04240.1 (Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein )

HSP 1 Score: 45.1 bits (105), Expect = 9.1e-05
Identity = 18/44 (40.91%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 55 WIDEIPECPVYHPSEGEFEDPLVYLQKIAPEASRYGQGITVPML 99
          W+  +P  PV+ P++ EF DP+ Y+ KI  EAS +G    +P L
Sbjct: 9  WLKALPLAPVFRPTDTEFADPIAYISKIEKEASAFGICKIIPPL 52

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g00210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q336N8	1.6e-17	53.41	Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica OX=39947 GN=J...	[more]
Q9VMJ7	4.4e-04	29.47	Lysine-specific demethylase lid OS=Drosophila melanogaster OX=7227 GN=lid PE=1 S...	[more]
C0SUT9	5.7e-04	51.28	Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana OX=3702 GN=JM...	[more]
Q9STM3	7.5e-04	47.22	Lysine-specific demethylase REF6 OS=Arabidopsis thaliana OX=3702 GN=REF6 PE=1 SV...	[more]

BLAST of Cp4.1LG05g00210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036210.1	2.17e-131	73.11	Lysine-specific demethylase [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6606271.1	4.14e-118	62.17	Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038888625.1	2.62e-43	83.33	lysine-specific demethylase JMJ706-like isoform X4 [Benincasa hispida]	[more]
XP_038888620.1	5.95e-43	83.33	lysine-specific demethylase JMJ706-like isoform X1 [Benincasa hispida] >XP_03888...	[more]
TYK31187.1	7.28e-41	75.26	lysine-specific demethylase JMJ706-like protein [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG05g00210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E513	3.53e-41	75.26	Lysine-specific demethylase JMJ706-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0LHZ2	5.90e-40	81.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901020 PE=4 SV=1	[more]
A0A5A7T8M7	6.10e-39	80.00	Lysine-specific demethylase JMJ706-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4E5H7	6.18e-39	80.00	LOW QUALITY PROTEIN: lysine-specific demethylase JMJ706-like OS=Cucumis melo OX=...	[more]
A0A6J1DYM9	6.35e-38	76.67	lysine-specific demethylase JMJ706-like isoform X2 OS=Momordica charantia OX=367...	[more]

BLAST of Cp4.1LG05g00210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46910.1	1.8e-16	48.35	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) fam...	[more]
AT1G08620.1	4.1e-05	51.28	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) fam...	[more]
AT1G08620.2	4.1e-05	51.28	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) fam...	[more]
AT3G48430.1	5.3e-05	47.22	relative of early flowering 6	[more]
AT5G04240.1	9.1e-05	40.91	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) fami...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003349	JmjN domain	SMART	SM00545	JmjN_1	coord: 61..90 e-value: 0.0034 score: 22.6
IPR003349	JmjN domain	PFAM	PF02375	JmjN	coord: 63..90 e-value: 7.3E-9 score: 35.4
IPR003349	JmjN domain	PROSITE	PS51183	JMJN	coord: 62..103 score: 8.893357
None	No IPR available	GENE3D	2.60.120.650	Cupin	coord: 47..91 e-value: 4.3E-9 score: 38.0
None	No IPR available	PANTHER	PTHR10694	LYSINE-SPECIFIC DEMETHYLASE	coord: 92..110
None	No IPR available	PANTHER	PTHR10694:SF33	TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN	coord: 92..110 coord: 3..90
None	No IPR available	PANTHER	PTHR10694	LYSINE-SPECIFIC DEMETHYLASE	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g00210.1	Cp4.1LG05g00210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0010468	regulation of gene expression
molecular_function	GO:0008168	methyltransferase activity