Cp4.1LG04g15390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g15390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionsuccinate dehydrogenase subunit 7B, mitochondrial-like
LocationCp4.1LG04: 12075061 .. 12077991 (+)
RNA-Seq ExpressionCp4.1LG04g15390
SyntenyCp4.1LG04g15390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGCATAATTAAAGGCAATTCATATTGCGTTAAAGTGGCTGAATCCATTTCTGTTTGCAGCGAAAGAAGCCCACTTTCCTTTCAGGTTTTTACATTACCAAATTTCTCCCTCATCTCACCATCGCAGCTCTCCTCTTCCTTCTCGCATCTCCTACTCAGGAACAATGGCGTTTTTGCTCAACAAAACCACTTTTGCCTCTCATTTCCGATCTCAATCCCAGGTTATTTCTCCTTCGATCGCCTTTTAGCTTATTTTTTTCTCTCAATCAATCTCTTGAGTTGTTTGGTTGACCAACAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAGCCAGGAACTCGTGAAAAGGCTGTAAGCATGTTTTACTTTCTCCTTGTTAATTGCTATCTTTAATTGTTCCTGTAGCGGTTTATTCCATGGTTTGGGATATTAGTTCCTTGTAGCTCGTCGCAGCTCCATTATGTTAATTGATATCTCATAATTATATGTTCAGTTTTTCTTGTATGGCTGGTAATCTAGTTCCTTTCGCTTTATTGTATTTGAATCTTTCGACCCTAGTGTAGATGGAAGCTTTTCGAACCTGTTCGAACTCCTGTATTTAGGTCTAGGAAATTAGAGGGGATGGGAGGTCGCCGTGCTGTTTTCTTAACTAATGTGATCCCGTGCTAATGGCTTGAAACCCTGGTTAAAAGTGATGTGTTCATAGTATTGGTGAAAATTACGGGTTTGCTTTGCATTATGTAGTATGTTCTCAAACTCAGCATGTATGATTTCCGTAGCGATACTTTCTTAAGCACTATGTTTGAAAATATTTATTCCTTGCATCACACGAAGAACATTCCTCTACACGTGGGTAAATAAATATCTATCTAATTTTTGGTTCGCCTCTGGCATTTGTGTGAGGGAATTTAGTTGCTAAGTATGTGAAGCAATGAGTTTTAATATGTTGAATGTCTGCAGTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTAGAATCAAGAAAATTGGAGATGTTCTGACCATTGTGGTTGTTGCTGGTATGAGTCTTTTTTCCATTAAATAAAATACTTATTTCTTTGTCCAGTGGGTCCTTGCTGCTATCTGCTATTATAGCAACATTGATGTGGATGGTGTGTGGCTGAATGATCTTTTGAGTGATGTATGTCGTTACGAGATTTTCATATCTTTGCAAGCTTCTTAGAAATGAAAATTGGCTTTCGGCATTTCAAACTTTCCATGCTTTTAGCCAAACCTAGTTTGTTCTTTCCCAATTTTAGGATTGTGGCAACTGCCACATTATTATTAGTGCCTTTTAGACTTTAGTGGCATTATCCTTGAGTTCTATCCATGATGCAGCTTGCTAACAACAGGTCGATTGAGACTAAGTAGCTATTTTTTTCTGTTTATTTAATTGGTGTGCTAGCTTTTCAACTTTAGTAGCTAGTATGAAAGATTTCATTTTAAGTTGATGATACTTAGTCCTAGTAATTGAATCAAGTGGTAATTACCGAGACAAGTGGCTTATTTTCTTCACAATTTCTATACACTACAAAATGTTTGTGTAGGATGATGCACTGAGCTAACTGAGTTCATAGATGAACATTTGATCTCCCCCACAAACTTTATTTCCATGAGTAGAATTTGGGTAGGGAAGTTAATTTGTCCATTATCCAAAGGAGAAAATTAAAAATTTGTAAATTTTGAGTGCTTCACATTTGCACCTGGCTATGTTATGTGAATTGGCATGATTACATGAGACATCTCTGATTTCTTGTTTTTGCTGTTTCTACGCCCCAAGTCATCTTTGGTCATTAGAAGATTCTTTCTTTTTTGTACAATGTTACCGTCCATAACAACTTTGAACTTTGTTATAACTTAAGACAACATTCAACACCATACTTCTATCCCCAAGCATGCCAACCTCGTCTTTTCTTTGAAGAGACTATTGATCAATTTTTATGAGCTATTTTTGTACGGCAGATTGTTGGTTTCAGTTATGGAGCATGTTCAACATAAAATGATGCTTCCATAAAGATATACGTTCTTCCTGAAATTATTTTGTGAAGGTGGTTAAAAGGAAAGAAAATATTTTTGGGAATGAATGCTTCAAGAGCTGTTTTATGGGTCATTTGGTTGAAACTAATGACAAACTTTTTAACAACATACATAGAAATTCTAGAGGAAAGTGGTAGATAATTTGAGAGAATTTAAAGCGTGTAACCTTTCTTTGATCAAAGTCATATAGACGTTTTGATAAGATATCTTCAATCATCATGGGGACTTTCTTTCTCCTTAATCTCCCCATGCTTGATGGTAGGAAGGCTATCTCCTTGCCTCTCTTTGTATCTCTTCTGTTATCTTGGAATGAGAATTTTGTCTCACCCACCCCTCCCAACAACAAGAACCATAATAATAATAATAAAAGAAAAAAGAAGCTGATCTTTGTTATTTGTATGTTTTTCAGGATGTTGCTATGAAATCTATGTAAAAGCAACCATGCGAGAAGAAGCTCGACAGGCAAAGACTGCTAGCGGAAGCACATGATGGAATTAAGAATCCAGTGGCAATTAAAATGTCCGGCAAAAGTTTCCAATGCTTTCATTTGTGTGCTAAATAAAGGTTGTTTTTGAAGCACCATTCTGTTAGGTTTTAATCATCAATAATATTTTTTTGACCTGAGACTTTGGATCATCCTAAGGGATAACAGGATACATTTTTATCATTATGAGCACCTTTTATAACCTTGTGTTGCCTGCTCCTTAGTTTGAAATAGAATTGACATGATGGAGGGAGGTGAGCTGAAACTATTGAAGATTGTGAGAGATGGGATTATCCTTGAAAAAACTGTTAGAATGTTGAATGAAGAATTGATATATTCAAATTTCTTGAAAAGA

mRNA sequence

GTGGCATAATTAAAGGCAATTCATATTGCGTTAAAGTGGCTGAATCCATTTCTGTTTGCAGCGAAAGAAGCCCACTTTCCTTTCAGGTTTTTACATTACCAAATTTCTCCCTCATCTCACCATCGCAGCTCTCCTCTTCCTTCTCGCATCTCCTACTCAGGAACAATGGCGTTTTTGCTCAACAAAACCACTTTTGCCTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAGCCAGGAACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTAGAATCAAGAAAATTGGAGATGTTCTGACCATTGTGGTTGTTGCTGGATGTTGCTATGAAATCTATGTAAAAGCAACCATGCGAGAAGAAGCTCGACAGGCAAAGACTGCTAGCGGAAGCACATGATGGAATTAAGAATCCAGTGGCAATTAAAATGTCCGGCAAAAGTTTCCAATGCTTTCATTTGTGTGCTAAATAAAGGTTGTTTTTGAAGCACCATTCTGTTAGGTTTTAATCATCAATAATATTTTTTTGACCTGAGACTTTGGATCATCCTAAGGGATAACAGGATACATTTTTATCATTATGAGCACCTTTTATAACCTTGTGTTGCCTGCTCCTTAGTTTGAAATAGAATTGACATGATGGAGGGAGGTGAGCTGAAACTATTGAAGATTGTGAGAGATGGGATTATCCTTGAAAAAACTGTTAGAATGTTGAATGAAGAATTGATATATTCAAATTTCTTGAAAAGA

Coding sequence (CDS)

ATGGCGTTTTTGCTCAACAAAACCACTTTTGCCTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAGCCAGGAACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTAGAATCAAGAAAATTGGAGATGTTCTGACCATTGTGGTTGTTGCTGGATGTTGCTATGAAATCTATGTAAAAGCAACCATGCGAGAAGAAGCTCGACAGGCAAAGACTGCTAGCGGAAGCACATGA

Protein sequence

MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST
Homology
[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy Swiss-Prot
Match: Q3E870 (Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7B PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-30
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKG 60
           MAFLLN  + +SH RS S     D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK 
Sbjct: 1   MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61  VSRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTAS 98
           V ++K+IGDVLT+VVVAGCCYEIYVKA M++EA  A  +S
Sbjct: 61  VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 100

[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy Swiss-Prot
Match: Q9C5E8 (Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7A PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-27
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 0 

Query: 1  MAFLLNKTTFASHFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN T+ +SH RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV
Sbjct: 1  MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQA 94
           R+K+IGDVLT+VVVAGCCYEIY +  MR+EA+ A
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQAA 93

[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy Swiss-Prot
Match: Q6H611 (Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH7 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.3e-12
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 27 RRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKKIGDVLTIVVVAGCCYEIYVKA 85
          RRGFHVE G REKALL ED +L+RF+S+K  V ++ K+G++LT VV+  C YEI   A
Sbjct: 31 RRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSKVGNILTGVVLFACAYEIVALA 88

[Close]
BLAST of Cp4.1LG04g15390 vs. NCBI nr
Match: XP_023529214.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198 bits (504), Expect = 5.86e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. NCBI nr
Match: XP_022969157.1 (succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 192 bits (488), Expect = 1.62e-61
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTT ASHFRSQSQ DPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IKKIGDVLTIVVVAGCCYEIYV+ATMREEARQAKTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. NCBI nr
Match: KAG6587488.1 (Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021475.1 Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191 bits (485), Expect = 4.64e-61
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT  AS FRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. NCBI nr
Match: XP_022135509.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia])

HSP 1 Score: 189 bits (480), Expect = 2.69e-60
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAF LN+TT ASHFRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IK++GD+LTIVVVAGCCYEIYVKATMREEARQAKTASGST
Sbjct: 61  IKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. NCBI nr
Match: XP_022933942.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 188 bits (478), Expect = 5.43e-60
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT  AS FRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQA TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy TrEMBL
Match: A0A6J1HVK4 (succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111468234 PE=4 SV=1)

HSP 1 Score: 192 bits (488), Expect = 7.84e-62
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTT ASHFRSQSQ DPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IKKIGDVLTIVVVAGCCYEIYV+ATMREEARQAKTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy TrEMBL
Match: A0A6J1C1M2 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111007450 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 1.30e-60
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAF LN+TT ASHFRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IK++GD+LTIVVVAGCCYEIYVKATMREEARQAKTASGST
Sbjct: 61  IKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy TrEMBL
Match: A0A6J1F188 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441204 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 2.63e-60
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT  AS FRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQA TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy TrEMBL
Match: A0A6J1E5D6 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111429643 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 5.09e-58
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLL KT+ ASHFRSQSQVDPSS SRRGFH+EPGTREKALLAEDPSLRRFRSHKKGV+R
Sbjct: 12  MAFLLTKTSLASHFRSQSQVDPSSPSRRGFHIEPGTREKALLAEDPSLRRFRSHKKGVAR 71

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAK AS ST
Sbjct: 72  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASEST 111

[Close]
BLAST of Cp4.1LG04g15390 vs. ExPASy TrEMBL
Match: A0A6J1JM91 (succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111485669 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 2.96e-57
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLL KT  ASHFRSQSQVDPSS SRRGFHVEPG REKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLTKTALASHFRSQSQVDPSSPSRRGFHVEPGAREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQAK AS ST
Sbjct: 61  IKQIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASEST 100

[Close]
BLAST of Cp4.1LG04g15390 vs. TAIR 10
Match: AT5G62575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-31
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 1  MAFLLNKTTFASHFRSQSQV--DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN  + +SH RS S    D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK V
Sbjct: 1  MAFLLNNASISSHLRSSSSQTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKSV 60

Query: 61 SRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTAS 98
           ++K+IGDVLT+VVVAGCCYEIYVKA M++EA  A  +S
Sbjct: 61 HKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 99

[Close]
BLAST of Cp4.1LG04g15390 vs. TAIR 10
Match: AT5G62575.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-31
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 1   MAFLLNKTTFASHFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKG 60
           MAFLLN  + +SH RS S     D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK 
Sbjct: 1   MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61  VSRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTAS 98
           V ++K+IGDVLT+VVVAGCCYEIYVKA M++EA  A  +S
Sbjct: 61  VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 100

[Close]
BLAST of Cp4.1LG04g15390 vs. TAIR 10
Match: AT3G47833.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62575.2); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 0 

Query: 1  MAFLLNKTTFASHFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN T+ +SH RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV
Sbjct: 1  MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQA 94
           R+K+IGDVLT+VVVAGCCYEIY +  MR+EA+ A
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQAA 93

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g15390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E8703.5e-3066.00Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q9C5E82.1e-2770.53Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q6H6117.3e-1256.90Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Cp4.1LG04g15390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023529214.15.86e-64100.00succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
XP_022969157.11.62e-6196.00succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima][more]
KAG6587488.14.64e-6197.00Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosper... [more]
XP_022135509.12.69e-6093.00succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia][more]
XP_022933942.15.43e-6096.00succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata][more]
BLAST of Cp4.1LG04g15390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVK47.84e-6296.00succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
A0A6J1C1M21.30e-6093.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX... [more]
A0A6J1F1882.63e-6096.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1E5D65.09e-5892.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1JM912.96e-5792.00succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
BLAST of Cp4.1LG04g15390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G62575.11.9e-3166.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G62575.22.5e-3166.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G47833.11.5e-2870.53unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034573Succinate dehydrogenase subunit 7, mitochondrialPANTHERPTHR36041SUCCINATE DEHYDROGENASE SUBUNIT 7A, MITOCHONDRIAL-RELATEDcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g15390.1Cp4.1LG04g15390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function GO:0043495 protein-membrane adaptor activity